BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2707.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776073.1| integral membrane protein [Herbaspirillum se... 225 2e-57 ref|YP_001101237.1| hypothetical protein HEAR3006 [Herminiimonas... 164 7e-39 ref|YP_001354945.1| hypothetical protein mma_3255 [Janthinobacte... 161 4e-38 ref|YP_314558.1| hypothetical protein Tbd_0800 [Thiobacillus den... 133 1e-29 ref|YP_002514940.1| hypothetical protein Tgr7_2880 [Thioalkalivi... 131 5e-29 >ref|YP_003776073.1| integral membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64165.1| integral membrane protein [Herbaspirillum seropedicae SmR1] Length = 149 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 133/150 (88%), Positives = 141/150 (94%), Gaps = 2/150 (1%) Query: 41 MLFAKFFHLLGLTIWVGGMFFAHMALRPALGVLHPEQRLSLMAAVLANFFIWVWVAIALV 100 ML AKFFHLLGLTIWVGGMFFAHMALRPAL VLHPEQRL+LMAAVLA+FF+WVW+AIALV Sbjct: 1 MLIAKFFHLLGLTIWVGGMFFAHMALRPALAVLHPEQRLTLMAAVLASFFVWVWIAIALV 60 Query: 101 LGSGLHMMAVMGAGAAKLPPYVHAMTGIGIVMMLIFAHIFFAPFRRLKLAAAQQDWDRAS 160 LGSGLHMMA++GAG A PPYVHAMTGIG+VMMLIFAHIFFAPFRRLKLAAAQQDWDRA+ Sbjct: 61 LGSGLHMMAMLGAGHA--PPYVHAMTGIGVVMMLIFAHIFFAPFRRLKLAAAQQDWDRAA 118 Query: 161 RALRQVRMLVGINLCLGLLTIAIGALGPLS 190 RAL QVR LV INL LGLLTIAIGALGPLS Sbjct: 119 RALGQVRQLVSINLLLGLLTIAIGALGPLS 148 >ref|YP_001101237.1| hypothetical protein HEAR3006 [Herminiimonas arsenicoxydans] emb|CAL63116.1| Conserved hypothetical protein; putative membrane protein [Herminiimonas arsenicoxydans] Length = 148 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 90/151 (59%), Positives = 112/151 (74%), Gaps = 5/151 (3%) Query: 41 MLFAKFFHLLGLTIWVGGMFFAHMALRPALGV-LHPEQRLSLMAAVLANFFIWVWVAIAL 99 M+ AKF H+LG T+WVGGMFFAH ALRP V L P QRL+L+A + FF WVW+++AL Sbjct: 1 MIIAKFLHILGFTVWVGGMFFAHNALRPVAAVTLEPPQRLTLLAGIFTKFFTWVWISVAL 60 Query: 100 VLGSGLHMMAVMGAGAAKLPPYVHAMTGIGIVMMLIFAHIFFAPFRRLKLAAAQQDWDRA 159 + GSGL+MMA++G K P Y+ M +G++M LIFAHIFFAP+RRLK A A QDW Sbjct: 61 IFGSGLYMMALIG----KPPVYITLMFVLGVIMALIFAHIFFAPYRRLKRAVAAQDWKAG 116 Query: 160 SRALRQVRMLVGINLCLGLLTIAIGALGPLS 190 A+ Q+R LVGINL LGLLTI IG+LGPL+ Sbjct: 117 GAAMGQIRKLVGINLILGLLTIVIGSLGPLA 147 >ref|YP_001354945.1| hypothetical protein mma_3255 [Janthinobacterium sp. Marseille] gb|ABR90473.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 148 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 5/150 (3%) Query: 41 MLFAKFFHLLGLTIWVGGMFFAHMALRP-ALGVLHPEQRLSLMAAVLANFFIWVWVAIAL 99 M+ AKF H+LG T+WVGGMFFAH ALRP A VL P QRL+L+A V FF WVW+++AL Sbjct: 1 MIIAKFLHILGFTVWVGGMFFAHNALRPTAATVLEPPQRLTLLAGVFTKFFTWVWISVAL 60 Query: 100 VLGSGLHMMAVMGAGAAKLPPYVHAMTGIGIVMMLIFAHIFFAPFRRLKLAAAQQDWDRA 159 +LGSG++MMA+MG K P YV M +GI+MMLIFAHIFFAPFRRL A A QDW Sbjct: 61 ILGSGMYMMALMG----KPPLYVTLMFVLGIIMMLIFAHIFFAPFRRLLRAVAAQDWKAG 116 Query: 160 SRALRQVRMLVGINLCLGLLTIAIGALGPL 189 A+ +R LVGINL LGL+TI IG LGPL Sbjct: 117 GAAMATIRKLVGINLILGLVTIVIGTLGPL 146 >ref|YP_314558.1| hypothetical protein Tbd_0800 [Thiobacillus denitrificans ATCC 25259] gb|AAZ96753.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 151 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 74/144 (51%), Positives = 102/144 (70%), Gaps = 3/144 (2%) Query: 41 MLFAKFFHLLGLTIWVGGMFFAHMALRP-ALGVLHPEQRLSLMAAVLANFFIWVWVAIAL 99 M+ + F H+L + IWVGGMFFA+MALRP A VL P QRL+L A V FF WVW ++AL Sbjct: 1 MIPSLFLHVLSVVIWVGGMFFAYMALRPVAAAVLEPPQRLALWAGVFGRFFPWVWASVAL 60 Query: 100 VLGSGLHMMAVMGAGAAKLPPYVHAMTGIGIVMMLIFAHIFFAPFRRLKLAAAQQDWDRA 159 +L +GLHM+ M G A+ Y+ M +G++MMLIFAH+FF+P+++L+ A +DW Sbjct: 61 ILLTGLHML--MTLGGAQAAHYIFTMLVLGVLMMLIFAHVFFSPYKKLRRAVRDEDWKAG 118 Query: 160 SRALRQVRMLVGINLCLGLLTIAI 183 AL Q+R L+GINL LG++TIA+ Sbjct: 119 GAALAQIRRLIGINLSLGVITIAV 142 >ref|YP_002514940.1| hypothetical protein Tgr7_2880 [Thioalkalivibrio sulfidophilus HL-EbGr7] gb|ACL73953.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus HL-EbGr7] Length = 153 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 74/148 (50%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 41 MLFAKFFHLLGLTIWVGGMFFAHMALRP-ALGVLHPEQRLSLMAAVLANFFIWVWVAIAL 99 M A H+L IWVGGMFFA+MALRP A +L P R +L FF WVW A+ L Sbjct: 1 MSIAITLHVLSAVIWVGGMFFAYMALRPVAASLLEPPMRTTLWRDTFNRFFPWVWAAVIL 60 Query: 100 VLGSGLHMMAVMGAGAAKLPPYVHAMTGIGIVMMLIFAHIFFAPFRRLKLAAAQQDWDRA 159 +L +G M+ G A P YVH M G+G+VMM I+ H+FFAPFRR+K A + QDW A Sbjct: 61 LLVTGYWMLFKKFGGMAHAPLYVHVMNGLGLVMMAIYLHVFFAPFRRMKQAISAQDWPEA 120 Query: 160 SRALRQVRMLVGINLCLGLLTIAIGALG 187 R L Q+RML+GINL +GL+ +A+ + G Sbjct: 121 GRRLGQIRMLIGINLIIGLVVVAVASGG 148