BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2703.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003741171.1| hypothetical protein EbC_17900 [Erwinia bill...    62   2e-08
ref|YP_003943830.1| hypothetical protein Entcl_4315 [Enterobacte...    58   4e-07

>ref|YP_003741171.1| hypothetical protein EbC_17900 [Erwinia billingiae Eb661]
 emb|CAX59321.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 119

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 20  DIGLSREEMMAESGKQCSWAL--DYGISLDQQFGKYLDRLIFLFSLSKRAKMEKDDLAAF 77
           DI  S  +MMA    +    L  D    +D  F +YL +L    +L K AK   D+LA  
Sbjct: 9   DIKDSYVQMMASLSSEVEDELLIDEKSDVDDIFYQYLHKLNDSAALLKNAKSAGDELAVQ 68

Query: 78  AALLGARLYAHKLMNLFENIEDEIDKVLFRDARFIWPEIPENYDFPDHY 126
           AAL+  R+Y+ +L   FE+I+D+ D +L    + +WP+IPENY  P+HY
Sbjct: 69  AALVYIRVYSLRLSGFFEDIKDDTDTLL---KKSVWPDIPENYQVPEHY 114


>ref|YP_003943830.1| hypothetical protein Entcl_4315 [Enterobacter cloacae SCF1]
 gb|ADO50546.1| hypothetical protein Entcl_4315 [Enterobacter cloacae SCF1]
          Length = 124

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 1   MKKEENLDVVQELFTSLAKDIGLSREEMMAESGKQCSWALDYGISLDQQFGKYLDRLIFL 60
           M ++ +L+V++      A    LS   +  E      W  +Y    ++   K +  L   
Sbjct: 1   MNQKNDLNVIKYSIIDFAHTQNLSASNLQDE------WQSNYQSDWNENLRKDMHSLCLE 54

Query: 61  FSLSKRAKMEKDDLAAFAALLGARLYAHKLMNLFENIEDEIDKVLFRDARFIWPEIPENY 120
             L ++A +E+D     AAL+ AR+ A  L N F+++ ++I+K+   +  F+WP+IPE Y
Sbjct: 55  MELFQKALLEEDRTTQIAALVVARVRAMNLRNFFDDMFEDIEKMAGSE-EFLWPKIPEGY 113

Query: 121 DFPDHY 126
           + P HY
Sbjct: 114 EIPKHY 119