BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2693.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbaspirillum sero... 426 e-117 ref|ZP_08141483.1| hypothetical protein G1E_19525 [Pseudomonas s... 245 6e-63 ref|NP_745350.1| hypothetical protein PP_3206 [Pseudomonas putid... 245 7e-63 ref|NP_773061.1| UDP-glucose 4-epimerase [Bradyrhizobium japonic... 237 2e-60 ref|YP_003508325.1| NAD-dependent epimerase/dehydratase [Meiothe... 236 5e-60 >ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ62529.1| UDP-glucose 4-epimerase protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 246/317 (77%), Positives = 265/317 (83%), Gaps = 1/317 (0%) Query: 1 MRVLVTGAAGFIGATLLQVLQQAGQVGQQRITRLAALDRKLPLLPESVECIEGELQDAQV 60 M++LVTGA GFIGATL+ +L+Q GQ G +RI+ LA LDR+L + IEG LQDAQV Sbjct: 1 MKILVTGAGGFIGATLVALLRQRGQAGGRRISSLAVLDRQLGETAPDMVRIEGNLQDAQV 60 Query: 61 QSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLLAEGRATGSAPPVVVY 120 Q+++ FGADLCFHLAA+PGGAAEADPALSRRVNLDATLDLF LLA R + PPVVVY Sbjct: 61 QAQIVAFGADLCFHLAALPGGAAEADPALSRRVNLDATLDLFELLAR-RDPATPPPVVVY 119 Query: 121 ASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLPGIVAR 180 ASTIAVYG LPDPVTPATP RPALIYGAHK ACEILLAD TRRG+LDGRSLRLPGIVAR Sbjct: 120 ASTIAVYGLDLPDPVTPATPPRPALIYGAHKLACEILLADYTRRGLLDGRSLRLPGIVAR 179 Query: 181 PRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDPMLDTE 240 PRAASGLVSAFMSELLHALAAGE T PVGPQATAWWMSAQRCAENLLHAA MDP D E Sbjct: 180 PRAASGLVSAFMSELLHALAAGELFTCPVGPQATAWWMSAQRCAENLLHAASMDPTRDPE 239 Query: 241 GHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDDRIARR 300 G R W LPVLRLS+ +VVATLSALY VDG ALVRYAPQ VEAVFGRYP LDDR AR+ Sbjct: 240 GAAARVWPLPVLRLSIAQVVATLSALYGVDGQALVRYAPQPQVEAVFGRYPRLDDRAARQ 299 Query: 301 LGLRDDGSPAELVRRAL 317 LGLRDDGS E+V RAL Sbjct: 300 LGLRDDGSVQEMVERAL 316 >ref|ZP_08141483.1| hypothetical protein G1E_19525 [Pseudomonas sp. TJI-51] gb|EGB97199.1| hypothetical protein G1E_19525 [Pseudomonas sp. TJI-51] Length = 332 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 199/319 (62%), Gaps = 11/319 (3%) Query: 1 MRVLVTGAAGFIGATLLQVLQQAGQVGQQRITRLAALDRKLP-LLPES-VECIEGELQDA 58 MRV+++GA GF+G L++ L Q GQ+ Q+I + A+D+ LL +S + EG + + Sbjct: 1 MRVMISGANGFVGRQLVERLLQQGQLRGQKIEAILAVDQTTDGLLDDSRLRRHEGSITNP 60 Query: 59 QVQSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLLAEGRATGSAPPVV 118 + R+ G D+ FHL ++PGGAAEA+ L +VNL A+L+L L + PPV+ Sbjct: 61 ALLRRVLADGIDVVFHLVSIPGGAAEANYDLGYQVNLQASLELLQQLRNRQR----PPVL 116 Query: 119 VYASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLPGIV 178 VYAS++AVYG LP + + P P L Y AHKR EI + D RRG LDGR +RLPGIV Sbjct: 117 VYASSVAVYGGDLPARMDESQPAHPQLSYAAHKRMVEIGIEDLVRRGELDGRVVRLPGIV 176 Query: 179 ARPRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDPMLD 238 ARP+ +GL SAFMS+LLHA AAGE+ PV PQAT WWMSA C +NL+ AA + Sbjct: 177 ARPKQPNGLKSAFMSDLLHAYAAGEAYECPVSPQATCWWMSASCCVDNLIRAAEL----- 231 Query: 239 TEGHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDDRIA 298 +E R W LPVL+LS+ E++ L++ + + +R+ P +EA+FG P L A Sbjct: 232 SESQGNRVWQLPVLQLSISEILEALASRFGAENSKNIRFNPDPQLEALFGSLPPLRTTRA 291 Query: 299 RRLGLRDDGSPAELVRRAL 317 R G R+D S ++L+R AL Sbjct: 292 REFGFRNDRSASQLIRNAL 310 >ref|NP_745350.1| hypothetical protein PP_3206 [Pseudomonas putida KT2440] gb|AAN68814.1|AE016514_3 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 328 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 154/321 (47%), Positives = 197/321 (61%), Gaps = 11/321 (3%) Query: 1 MRVLVTGAAGFIGATLLQVLQQAGQVGQQRITRLAALDRKLPLLPESVECIE--GELQDA 58 MRV+VTGA GF+G L+Q L G++ +RI L LD+ L LPE G + DA Sbjct: 1 MRVMVTGANGFVGRQLVQRLLDLGELRGRRIEALLVLDQALDGLPEDARLRRHHGSVTDA 60 Query: 59 QVQSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLLAEGRATGSAPPVV 118 + R+ G D+ FHL +VPGGAAE +VNL A+L+L + L PPV+ Sbjct: 61 ALLRRVLADGVDVVFHLVSVPGGAAETQYERGYQVNLQASLELLDQLRNPLC----PPVL 116 Query: 119 VYASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLPGIV 178 VYAS++AVYG LP + P P L Y AHKR EI L D RRG +DGR+LRLPGIV Sbjct: 117 VYASSVAVYGGKLPTRMDEGQPASPQLSYAAHKRMVEIALQDLARRGEVDGRALRLPGIV 176 Query: 179 ARPRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDPMLD 238 ARPR +GL SAFMS+LLHA AGE+ T PV P+A+AWWMSA+ C +NLLHAA L+ Sbjct: 177 ARPREPNGLRSAFMSDLLHAYVAGEAYTCPVSPEASAWWMSARCCVDNLLHAA----ELE 232 Query: 239 TEGHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDDRIA 298 G +R W LPVL L++ +V+ L+A+ + +AP +E++FGRYP L A Sbjct: 233 APGS-QRVWQLPVLHLTIAQVLTGLAAVAGEANRERIAFAPDPQLESLFGRYPPLRTSFA 291 Query: 299 RRLGLRDDGSPAELVRRALSL 319 R LG DGS A L+R AL L Sbjct: 292 RELGFCHDGSVAGLLRNALDL 312 >ref|NP_773061.1| UDP-glucose 4-epimerase [Bradyrhizobium japonicum USDA 110] dbj|BAC51686.1| bll6421 [Bradyrhizobium japonicum USDA 110] Length = 312 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 152/318 (47%), Positives = 185/318 (58%), Gaps = 15/318 (4%) Query: 1 MRVLVTGAAGFIGATLLQVLQQAGQVGQQRITRLAALDRKLPLLPESVECIEGELQDAQV 60 MR+LVTGA GFIG+ LL+ L G I + +R + V I G + D + Sbjct: 1 MRILVTGAGGFIGSALLKSLM--GNPAAPEIVAIDLAERPTWTAADRVRWICGGVDDCAI 58 Query: 61 QSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLLAEGRATGSAPPVVVY 120 + R +L FHL++VPG AEADP L RRVNLDA+LDL LA S P VVY Sbjct: 59 MDEIFRDEFNLVFHLSSVPGALAEADPRLGRRVNLDASLDLLERLA----ATSCCPRVVY 114 Query: 121 ASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLPGIVAR 180 AS+IAVYG P PV TP RPA+ YGAHKR EI LAD +RRG + G S+RLPGIVAR Sbjct: 115 ASSIAVYG-PSSGPVGSRTPPRPAISYGAHKRMVEIALADHSRRGEMSGISVRLPGIVAR 173 Query: 181 PRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDPMLDTE 240 P ASG SAFMSELL ALAAGE PV P AT WW+S + NL+HA + + Sbjct: 174 PGPASGFGSAFMSELLQALAAGEPYCCPVSPSATMWWLSVAQAVNNLIHAGAIAHCGAVQ 233 Query: 241 GHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDDRIARR 300 LP L L+++EVV + + +LV+Y P +EA FGR+P LD R Sbjct: 234 --------LPALHLTIEEVVKGFAETCGAEQASLVQYRPDVRIEATFGRFPELDVADERE 285 Query: 301 LGLRDDGSPAELVRRALS 318 LG DDGS A L R AL+ Sbjct: 286 LGFTDDGSVATLFRNALT 303 >ref|YP_003508325.1| NAD-dependent epimerase/dehydratase [Meiothermus ruber DSM 1279] gb|ADD29305.1| NAD-dependent epimerase/dehydratase [Meiothermus ruber DSM 1279] Length = 311 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 152/320 (47%), Positives = 190/320 (59%), Gaps = 15/320 (4%) Query: 1 MRVLVTGAAGFIGATLLQVLQQAGQVGQQRITRLAALDRKLPL--LPESVECIEGELQDA 58 MRVLVTGA GF+G L+++L + T+L LDRK + ++ +EG+ Sbjct: 1 MRVLVTGANGFVGRWLVRLLLTNNSL---EPTQLLLLDRKFNIAHTDPRIQTLEGDFFQP 57 Query: 59 QVQSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLL-AEGRATGSAPPV 117 QV + FHLA++PGG AE L VNL TL LF L + RA PV Sbjct: 58 QVLEAALAKPVGVVFHLASIPGGLAEQALELGLEVNLKGTLALFEALRKQPRA-----PV 112 Query: 118 VVYASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLPGI 177 VV+AS+IAVYG+PLP+ V TP P+ YG K E LL D +RRG LDGR+LRLPGI Sbjct: 113 VVFASSIAVYGSPLPERVDAQTPPNPSSSYGTQKLLGEYLLLDYSRRGELDGRALRLPGI 172 Query: 178 VARPRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDPML 237 VARP SGLVSAFMSE++H L AG+ T PV PQAT WWMSA CA NL+HAA L Sbjct: 173 VARPAEPSGLVSAFMSEVMHRLKAGQPCTAPVSPQATMWWMSAHCCAINLIHAAT----L 228 Query: 238 DTEGHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDDRI 297 ++ R LP LR S+QEVV L+A Y + L+RY P E +E+ FGR+P LD + Sbjct: 229 PSQAVYPRVTLLPALRASLQEVVDGLAACYGSNRRHLIRYQPDEAIESRFGRFPSLDASV 288 Query: 298 ARRLGLRDDGSPAELVRRAL 317 A +G R DG L+ AL Sbjct: 289 AEAMGFRHDGDVNSLIFNAL 308