BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2687.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing protein [H...   189   1e-46
ref|ZP_03570621.1| Rieske [2Fe-2S] domain protein [Burkholderia ...   115   3e-24
ref|YP_001119474.1| Rieske (2Fe-2S) domain-containing protein [B...   114   4e-24
ref|ZP_05126825.1| rieske (2Fe-2S) domain protein [gamma proteob...   113   8e-24
ref|YP_001811495.1| Rieske (2Fe-2S) domain-containing protein [B...   111   5e-23

>ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62523.1| Rieske (2Fe-2S) domain protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/114 (82%), Positives = 101/114 (88%), Gaps = 2/114 (1%)

Query: 1   MYLCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHHGTPLPWRRDAYLDA 60
           MYLCH+TQLPE+GARGFDT  AGQATIF+LRRGDQVRAW DSCPHHGTPLPWRRDAY D 
Sbjct: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60

Query: 61  SGQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDGGLHLATGEDDPL 114
           +GQH+VCAAHGALFDPLTG CTLGPC GD+LT V LRIDDDGGLH+  G  DPL
Sbjct: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAG--DPL 112


>ref|ZP_03570621.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2M]
 ref|ZP_03577266.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2]
 gb|EEE08843.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2]
 gb|EEE16528.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2M]
          Length = 119

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 3   LCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHH--GTPLPWRRDAYLDA 60
           L  +  LP+ GARGFD  G G  T+F++R G QVRA+ D+CPH    TP+ WR+DAYL  
Sbjct: 11  LASIDDLPDPGARGFDPDGRGHDTLFVVRYGTQVRAYRDACPHFFGETPMAWRKDAYLSG 70

Query: 61  SGQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDGGLHL 106
            G  +VC AHGA FD  +GEC LGPCLG  LTPV + + DDG + L
Sbjct: 71  DGTRIVCHAHGAQFDIASGECVLGPCLGQRLTPVEIDVTDDGAIVL 116


>ref|YP_001119474.1| Rieske (2Fe-2S) domain-containing protein [Burkholderia
           vietnamiensis G4]
 gb|ABO54639.1| Rieske (2Fe-2S) domain protein [Burkholderia vietnamiensis G4]
          Length = 123

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 3   LCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHHG-TPLPWRRDAYLDAS 61
           L  V  LP+ GARGFD  G G+ TIF++RRG+Q+ AW D+CPH G TP+ WR+DAYL+  
Sbjct: 10  LASVADLPDPGARGFDPDGTGRDTIFVVRRGEQLHAWRDACPHFGDTPMAWRKDAYLNGD 69

Query: 62  GQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDG 102
              +VC AHGA FD  +G C LGPCLG  L  V + + +DG
Sbjct: 70  ATRIVCHAHGAQFDMASGVCLLGPCLGQRLIAVPIEVTEDG 110


>ref|ZP_05126825.1| rieske (2Fe-2S) domain protein [gamma proteobacterium NOR5-3]
 gb|EED33372.1| rieske (2Fe-2S) domain protein [gamma proteobacterium NOR5-3]
          Length = 131

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 3   LCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHHGT-PLPWRRDAYLDAS 61
           LCH+ +L E  A+GFD    GQA++F++++   + A+ D CPH+GT PLPW+++ YLD +
Sbjct: 23  LCHIAELRESRAQGFDPFREGQASLFVVKKDTSLYAYRDRCPHYGTTPLPWKKNEYLDKA 82

Query: 62  GQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDGGL 104
           G  +VCAAHGA FD  TG C  GPCLG SL+ +AL +  DG L
Sbjct: 83  GDVIVCAAHGARFDITTGICISGPCLGQSLSAIALHVRRDGQL 125


>ref|YP_001811495.1| Rieske (2Fe-2S) domain-containing protein [Burkholderia ambifaria
           MC40-6]
 gb|ACB67279.1| Rieske (2Fe-2S) domain protein [Burkholderia ambifaria MC40-6]
          Length = 119

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 3   LCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHH--GTPLPWRRDAYLDA 60
           L  V  LP+ GARGFD  G G  T+F++R G QVRA+ D+CPH    T + WR+DAYL+ 
Sbjct: 11  LASVDDLPDPGARGFDPDGQGHDTLFVVRYGAQVRAYRDACPHFFGETQMAWRKDAYLNG 70

Query: 61  SGQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDGGLHL 106
            G  +VC AHGA FD  +GEC LGPCLG  LTPV + +  DG + L
Sbjct: 71  DGTRIVCHAHGAQFDIASGECVLGPCLGQRLTPVEIDVTGDGTIVL 116