BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2683.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774427.1| transcription regulator protein [Herbaspiril... 496 e-138 ref|ZP_03585427.1| nodulation protein D 1 [Burkholderia multivor... 337 1e-90 ref|YP_001811499.1| LysR family transcriptional regulator [Burkh... 337 1e-90 ref|ZP_03570628.1| nodulation protein D 1 [Burkholderia multivor... 336 3e-90 ref|YP_001119470.1| LysR family transcriptional regulator [Burkh... 336 3e-90 >ref|YP_003774427.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62519.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 261/295 (88%), Positives = 278/295 (94%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALLTE++ISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM Sbjct: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 Query: 61 EATPRAEVLRDAVNDVLRRIEGSIAAKPAFVPAESHREFRISVSDFSLNVLIPRVIARAH 120 E TPRAEVL+DAV+DVLRRI+GSIAA PAFVPAES REFRISVSDF+L+VLIPRV+ARAH Sbjct: 61 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVLARAH 120 Query: 121 AEGPQIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 AEG IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDS L Sbjct: 121 AEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSAL 180 Query: 181 AKGKLTLERYMEAGHVVMVPPGANASSVEAWMASKLGFARRVEITSFSFASCVALVQGTD 240 A+G+LTLERYM +GHVVMVPPGANASSVEAWMA KLGFARRVE+TSFSFAS +ALVQGTD Sbjct: 181 AQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALALVQGTD 240 Query: 241 RIATVHGRLARKLATQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVLL 295 RIATVH RLA+ LA Q PVV+KESPL L EM QMMQWHRYR+NDPGI+WLRRV L Sbjct: 241 RIATVHARLAQLLAPQWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLRRVFL 295 >ref|ZP_03585427.1| nodulation protein D 1 [Burkholderia multivorans CGD1] gb|EEE00019.1| nodulation protein D 1 [Burkholderia multivorans CGD1] Length = 308 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 170/294 (57%), Positives = 226/294 (76%), Gaps = 1/294 (0%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALL+E NISRAAEKIHLSQSAMSNAL+RLREYF+DELL+QVGR+M Sbjct: 1 MRFNKLDLNLLVALDALLSEQNISRAAEKIHLSQSAMSNALSRLREYFNDELLVQVGRKM 60 Query: 61 EATPRAEVLRDAVNDVLRRIEGSIAAKPAFVPAESHREFRISVSDFSLNVLIPRVIARAH 120 E TPRAE L+DAV D+L R++ ++AA+P FVP+ ++R FR+ VSD+++ L+P + A+ Sbjct: 61 EPTPRAETLKDAVRDILVRVDATVAAQPEFVPSHANRLFRLFVSDYTMTTLMPHLFELAY 120 Query: 121 AEGPQIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 P IRF L PQ+ P R L+R E DLL++P+E+C+ +HPAE + E + CV+W SPL Sbjct: 121 KVAPGIRFELRPQIAYPHRVLERGEADLLIIPKEYCSTEHPAEVLLEETYCCVMWSHSPL 180 Query: 181 AKGKLTLERYMEAGHVVMVPPGANASSVEAWMASKLGFARRVEITSFSFASCVALVQGTD 240 ++G+LT ERYM AGHVV V G +++E W +LG RRVE +++SF S L+ GTD Sbjct: 181 SQGELTSERYMAAGHVV-VQVGDAQTALEDWFMQRLGVMRRVEASTYSFVSPAHLLAGTD 239 Query: 241 RIATVHGRLARKLATQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVL 294 RIAT+H RLA + A LP+VL+E P+P+ + Q MQWH++RT+DPG+ WLR +L Sbjct: 240 RIATMHRRLAEEAARSLPLVLREVPVPVPTVEQAMQWHKHRTSDPGLAWLRGLL 293 >ref|YP_001811499.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB67283.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 308 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 169/294 (57%), Positives = 226/294 (76%), Gaps = 1/294 (0%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALL+E NISRAAEKIHLSQSAMSNAL+RLRE+F+DELL+QVGR+M Sbjct: 1 MRFNKLDLNLLVALDALLSEQNISRAAEKIHLSQSAMSNALSRLREFFNDELLVQVGRKM 60 Query: 61 EATPRAEVLRDAVNDVLRRIEGSIAAKPAFVPAESHREFRISVSDFSLNVLIPRVIARAH 120 E TPRAE L+DAV D+L RI+ ++AA+P FVP ++R FR+ VSD+++ L+P ++A A+ Sbjct: 61 EPTPRAEALKDAVRDILVRIDATVAAQPEFVPEHANRLFRLFVSDYTMTTLMPHLLALAY 120 Query: 121 AEGPQIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 P IRF L PQ+ P R L+R E DLL++P+E+C+ +HPAE + E + CV+W SPL Sbjct: 121 KAAPGIRFELRPQIAYPHRVLERGEADLLIIPKEYCSTEHPAEVLLEETYCCVMWSHSPL 180 Query: 181 AKGKLTLERYMEAGHVVMVPPGANASSVEAWMASKLGFARRVEITSFSFASCVALVQGTD 240 ++G++T ERYM AGHVV V G +++E W +LG RRVE +++SF S L+ GT+ Sbjct: 181 SQGEMTNERYMAAGHVV-VQVGDVQTALEDWFMQRLGVVRRVEASTYSFVSPAHLLVGTN 239 Query: 241 RIATVHGRLARKLATQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVL 294 RIAT+H RLA A LP+VL+E P+P+ + Q MQWH++RT+DPG+ WLR +L Sbjct: 240 RIATMHRRLAEDAARSLPIVLREVPVPVPTLEQAMQWHKHRTSDPGLTWLRGLL 293 >ref|ZP_03570628.1| nodulation protein D 1 [Burkholderia multivorans CGD2M] ref|ZP_03577273.1| nodulation protein D 1 [Burkholderia multivorans CGD2] gb|EEE08850.1| nodulation protein D 1 [Burkholderia multivorans CGD2] gb|EEE16535.1| nodulation protein D 1 [Burkholderia multivorans CGD2M] Length = 308 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 168/294 (57%), Positives = 226/294 (76%), Gaps = 1/294 (0%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALL+E NISRAAEKIHLSQSAMSNAL+RLREYF+DELL+QVGR+M Sbjct: 1 MRFNKLDLNLLVALDALLSEQNISRAAEKIHLSQSAMSNALSRLREYFNDELLVQVGRKM 60 Query: 61 EATPRAEVLRDAVNDVLRRIEGSIAAKPAFVPAESHREFRISVSDFSLNVLIPRVIARAH 120 E TPRAE L+DAV D+L R++ +++A+P FVPA ++R FR+ VSD+++ L+P + A+ Sbjct: 61 EPTPRAEALKDAVRDILVRVDATVSAQPEFVPAHANRLFRLFVSDYTMTTLMPHLFELAY 120 Query: 121 AEGPQIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 P IRF L PQ+ P R L+R E DLL++P+E+C+ +HPAE + E + CV+W SPL Sbjct: 121 KAAPGIRFELRPQIAYPHRVLERGEADLLIIPKEYCSTEHPAEVLLEETYCCVMWSHSPL 180 Query: 181 AKGKLTLERYMEAGHVVMVPPGANASSVEAWMASKLGFARRVEITSFSFASCVALVQGTD 240 ++G++T ERYM AGHVV V G +++E W +LG RRVE +++SF S L+ GT+ Sbjct: 181 SQGEMTSERYMAAGHVV-VQVGDAQTALEDWFMQRLGVMRRVEASTYSFVSPAHLLAGTN 239 Query: 241 RIATVHGRLARKLATQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVL 294 RIAT+H RLA + A LP+VL+E P+P+ + Q MQWH++RT+DPG+ WLR +L Sbjct: 240 RIATMHRRLAEEAARSLPIVLREVPVPVPTVEQAMQWHKHRTSDPGLAWLRGLL 293 >ref|YP_001119470.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO54635.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 308 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 172/294 (58%), Positives = 222/294 (75%), Gaps = 1/294 (0%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALL+E NISRAAEKIHLSQSA SNALARLREYFDDELL+QVGR+M Sbjct: 1 MRFNKLDLNLLVALDALLSEQNISRAAEKIHLSQSATSNALARLREYFDDELLVQVGRKM 60 Query: 61 EATPRAEVLRDAVNDVLRRIEGSIAAKPAFVPAESHREFRISVSDFSLNVLIPRVIARAH 120 E TPRAE L+DAV D+L R++ ++ A+P FVPA++ R FR+ VSD+++ LIP + A+ Sbjct: 61 EPTPRAEALKDAVRDILVRVDATVTAQPEFVPAQACRLFRLFVSDYTMTTLIPHLFRLAY 120 Query: 121 AEGPQIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 A+ P I F L PQV P R L+R E DLL++P+E+C+ +HPAE + E CV+W SPL Sbjct: 121 AQAPGIGFDLRPQVAYPHRVLERGEADLLIIPKEYCSTEHPAEVLLEETFCCVLWEHSPL 180 Query: 181 AKGKLTLERYMEAGHVVMVPPGANASSVEAWMASKLGFARRVEITSFSFASCVALVQGTD 240 AKG+LT ERYM AGH+V V G +++EAW +LG RRVE +++SF S L+ GT+ Sbjct: 181 AKGELTKERYMGAGHIV-VQVGEGQTALEAWFMQRLGVVRRVEASTYSFLSPAHLLVGTN 239 Query: 241 RIATVHGRLARKLATQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVL 294 RIAT+H RLA A LP+VL++ PL + M Q +QWH++RT+D G+ WLR +L Sbjct: 240 RIATMHRRLAEAAARDLPLVLRDVPLTVPTMEQSVQWHKHRTSDQGLMWLRALL 293