BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2681.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_840225.1| transmembrane sensor [Nitrosomonas europaea ATC... 231 1e-58 ref|YP_001355186.1| Fe2+-dicitrate sensor, membrane component [J... 229 5e-58 ref|YP_003978576.1| FecR family protein [Achromobacter xylosoxid... 228 7e-58 ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane component [J... 227 2e-57 ref|YP_001666992.1| anti-FecI sigma factor FecR [Pseudomonas put... 213 3e-53 >ref|NP_840225.1| transmembrane sensor [Nitrosomonas europaea ATCC 19718] emb|CAD84038.1| putative transmembrane sensor [Nitrosomonas europaea ATCC 19718] Length = 349 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 131/314 (41%), Positives = 185/314 (58%), Gaps = 3/314 (0%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 I A++W+V LQ+ + + HEA +RW A P H+LAWQ +++++ R L L Sbjct: 35 IAQCAVEWLVELQAADHDEATHEAFQRWLAAHPDHKLAWQHIETVNTRFNGLTSPLGSAV 94 Query: 72 IGASEARTRN-NRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLAD 130 A R+ RR +KTL V AG A PW+AW A T G+RR ITLAD Sbjct: 95 AKAVLTPRRSLKRRQIIKTLVVILFAGSTGWWADEKIPWRAWTADERTHIGQRRNITLAD 154 Query: 131 GTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQARALGTR 190 G+ + LN+ TA+++ F +R ++L RGE+L+TT + RPF+V+ + R LGTR Sbjct: 155 GSRVVLNTDTAINIRFTANERRLQLVRGEILVTTNQDSASIVRPFIVEIAQSELRPLGTR 214 Query: 191 FQLRDAEEGMRLAVYEGAVEFR-SQNENAPVRVDAGRQGLFDAQGLVGRLVAANEQAIAW 249 F + RL+V+EGAVE R Q+ N V AG Q F QG + + A++ + AW Sbjct: 215 FTIHQQTTSNRLSVFEGAVEIRLRQDINYRHIVQAGEQVDFSNQG-IHEIHPADDTSTAW 273 Query: 250 TDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTLPV 309 ++G+I+A M L +AELDR+ PGKL CDPAVA L +SG +PL P IL A+ TLPV Sbjct: 274 SNGMIIASSMRLADFLAELDRHRPGKLNCDPAVADLRVSGTYPLTDPEDILDALQTTLPV 333 Query: 310 RVDTFTDYWITLRP 323 ++ FT YW+T+RP Sbjct: 334 KIQYFTRYWVTVRP 347 >ref|YP_001355186.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] gb|ABR89497.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 340 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 189/316 (59%), Gaps = 9/316 (2%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 I A W+ L G S+ + AC+RWRA P+HE AWQR Q ++++ +P+A+ + Sbjct: 25 IAREAAQWLASLYDGQ-SEEDIAACKRWRAADPEHERAWQRAQRINQKFGIVPKAVGLPA 83 Query: 72 IGASEARTRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLADG 131 +G + R +RR A+KTL V A + + R+ PW A A Y T GE R I LADG Sbjct: 84 LGR---KVRVDRRRAIKTLLVLMMAAPVGYVSYRYAPWVAMTADYRTAKGEHREIQLADG 140 Query: 132 TLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEE-RPSYRPFLVQTRLGQARALGTR 190 T + L +AT++D+ FD QRL+RLH GE+ + TG + P+YRPF+V+T G RALGTR Sbjct: 141 TRVHLGTATSIDIEFDGAQRLLRLHAGEIEVRTGSDSGHPAYRPFIVKTTHGYIRALGTR 200 Query: 191 FQLRDAEEGM--RLAVYEGAVEFRSQNENAPVRV-DAGRQGLFDAQGLVGRLVAANEQAI 247 F +R E R++V E AVE R Q + + V +AG+Q F+ G ++ A + Sbjct: 201 FVVRRDEGATTTRVSVLEHAVEIRPQAASGKLIVLNAGQQTRFNESGF-EQVEALDPHVA 259 Query: 248 AWTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTL 307 WT GV+ A RM L + AEL+RY PG LRCDPAVAGL I+G F LD IL A+ TL Sbjct: 260 DWTSGVLFASRMRLDEFAAELNRYRPGLLRCDPAVAGLRITGAFQLDNTDNILNALPDTL 319 Query: 308 PVRVDTFTDYWITLRP 323 PV V T YW+T+ P Sbjct: 320 PVEVLFRTRYWVTIVP 335 >ref|YP_003978576.1| FecR family protein [Achromobacter xylosoxidans A8] gb|ADP15861.1| FecR family protein 9 [Achromobacter xylosoxidans A8] Length = 341 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 133/319 (41%), Positives = 192/319 (60%), Gaps = 6/319 (1%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 + + A++W+V LQ+ +ASD H AC+RWRAE P HE AW+ ++S +++ L L G+ Sbjct: 25 VSLRAVEWLVALQAADASDSTHAACQRWRAEHPDHERAWRHIESFGQQLRGLNTPLVRGT 84 Query: 72 IGASEARTRNNRRFALKTLCVA--TGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLA 129 + E R RR A+KTL +A G G A + W WQ W + + T G+R +TLA Sbjct: 85 L-THEDRNGRTRRRAIKTLALALFAGGGAWLARDSLWRGWQDWQSDHHTDAGQRLGVTLA 143 Query: 130 DGTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHE-ERPSYRPFLVQTRLGQARALG 188 D + + L++A+A+DV FD QRL+RL RG +L+TT + P RPFLV+T G+ RALG Sbjct: 144 DASRIDLDTASAIDVRFDSAQRLVRLLRGRILVTTAPDPASPIGRPFLVETAQGRVRALG 203 Query: 189 TRFQLRDAEEGMRLAVYEGAVEFRSQ-NENAPVRVDAGRQGLFDAQGLVGRLVAANEQAI 247 TR+ +R + +AV+EG VE R + NAP + A Q F + V + A + Sbjct: 204 TRYSVRQFPDRSHVAVFEGTVEIRPDLHTNAPRLIHASEQASF-TRDAVDQPRPAEPRDA 262 Query: 248 AWTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTL 307 +W+ G++VA MPL + EL RY+PG+L C P + L +SG++PLD R+L + RT Sbjct: 263 SWSVGMLVAQDMPLSDFIEELARYVPGRLACAPDASHLKVSGIYPLDNADRVLDMLRRTH 322 Query: 308 PVRVDTFTDYWITLRPRAA 326 PV VD T YWIT+R R A Sbjct: 323 PVEVDRMTRYWITVRLRGA 341 >ref|YP_001352850.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] gb|ABR89798.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 330 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 146/313 (46%), Positives = 183/313 (58%), Gaps = 7/313 (2%) Query: 12 IVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPRALAHGS 71 IV AI W+V LQSG AS + AC WRA +HE AWQRL L + LA Sbjct: 16 IVKQAIVWLVTLQSGGASPTDERACEAWRAADSRHEQAWQRLHGLGQDFRASSNVLASPL 75 Query: 72 IGAS-EARTRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRRITLAD 130 + + RNNRR LK+L G A + WQ+ MA + T TGE+RRI LAD Sbjct: 76 LRSVLRNSERNNRRIVLKSLFGLALIGGTATVVRKQPAWQSAMAEHQTATGEQRRIVLAD 135 Query: 131 GTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQARALGTR 190 GT + LN+ATA+DV FD+Q RL+ LHRGE+LI T +E + RPF + T G R +GTR Sbjct: 136 GTRILLNTATAIDVHFDDQLRLVILHRGEILIETAQDE--AGRPFELATSNGTIRPIGTR 193 Query: 191 FQLR--DAEEGMRLAVYEGAVEFRSQNENAPVRVDAGRQGLFDAQGLVGRLVAANEQAIA 248 F +R D +AV EGAV N+ VR++AG Q F + A ++ A A Sbjct: 194 FTVRHSDRPSSTAVAVLEGAVRVTPGQGNS-VRINAGEQTHFTELAALAPF-ALDDSAAA 251 Query: 249 WTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAIARTLP 308 WTDGV+V +RM L V ELDRY PG LRCDPAVA L +SG FPL P +LA +A TLP Sbjct: 252 WTDGVLVVERMRLADFVTELDRYRPGVLRCDPAVADLLVSGSFPLRDPDAVLALLAETLP 311 Query: 309 VRVDTFTDYWITL 321 ++V T T YW T+ Sbjct: 312 LQVRTLTRYWATV 324 >ref|YP_001666992.1| anti-FecI sigma factor FecR [Pseudomonas putida GB-1] gb|ABY96656.1| anti-FecI sigma factor, FecR [Pseudomonas putida GB-1] Length = 314 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 147/320 (45%), Positives = 187/320 (58%), Gaps = 12/320 (3%) Query: 6 TAPNDDIVMAAIDWMVRLQSGNASDHEHEACRRWRAEQPQHELAWQRLQSLSERVATLPR 65 + P + +V AI W VRL SG A E EAC+RWR P HE AWQRL R+ +P Sbjct: 4 SEPTEQVVAQAIGWRVRLASGLAQVEELEACQRWRGLHPSHEQAWQRLAVFDGRLGAMPP 63 Query: 66 ALAHGSIGASEARTRNNRRFALKTLCVATGAGLLAASAARWTPWQAWMAGYTTRTGERRR 125 AS+A +RR LK L + G + SA+ W+AG T GERRR Sbjct: 64 P------QASQALRYRDRRTVLKGLALLLGGSAVVGSASLGMRGSPWLAGQRTAMGERRR 117 Query: 126 ITLADGTLLQLNSATAVDVSFDEQQRLIRLHRGEVLITTGHEERPSYRPFLVQTRLGQAR 185 + L DG LQ+NS +A+D++FD QQR I L GEV+I TG ++ + RPF V+T LG + Sbjct: 118 LQLPDGGWLQMNSGSALDLAFDSQQRRINLLAGEVMIQTG--KQGAERPFWVETPLGTLQ 175 Query: 186 ALGTRFQLRDAEEGMRLAVYEGAVEFRSQN--ENAPVRVDAGRQGLFDAQGLVGRLVAAN 243 ALGT F +R +E LAV EGAV R ++A V + AG Q F+ Q + + Sbjct: 176 ALGTGFSVRLNDESALLAVEEGAVAVRPGTLLQSAAV-IRAGEQVRFNRQRVFATQ-PLD 233 Query: 244 EQAIAWTDGVIVADRMPLGQLVAELDRYLPGKLRCDPAVAGLPISGVFPLDQPARILAAI 303 A+AW DG +V + PL +L AEL RY G LRCDPAVA L ISGVFPLD+P R LAA+ Sbjct: 234 RDALAWRDGYLVVRQWPLARLCAELGRYRNGVLRCDPAVADLLISGVFPLDEPDRALAAL 293 Query: 304 ARTLPVRVDTFTDYWITLRP 323 RTLPVR T +W+TL P Sbjct: 294 GRTLPVRTRYLTRWWVTLEP 313