BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2679.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776853.1| branched-chain amino acid ABC transporter pe... 510 e-142 ref|YP_004751556.1| leucine-, isoleucine-, valine-, threonine-, ... 500 e-139 ref|ZP_08273712.1| putative amino acid ABC transporter [Oxalobac... 499 e-139 ref|YP_004751555.1| putative amino acid ABC transporter [Collimo... 491 e-136 ref|YP_001099059.1| putative amino acid ABC transporter [Hermini... 468 e-130 >ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64945.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 286/379 (75%), Positives = 319/379 (84%), Gaps = 2/379 (0%) Query: 3 KIKMIPVATALVAAFSFAGAAQAQEVIKIGHVAPLTGPNAHIGKDNENGARMAVDELNAK 62 K +IP+ A+ +FAGAA +QEV+KI HV PL+GPNAH+GKDNENGARMAVDELNAK Sbjct: 4 KSAIIPLTAAI--GLAFAGAAYSQEVVKIAHVGPLSGPNAHMGKDNENGARMAVDELNAK 61 Query: 63 GFEIGGKKVTFQLVPQDDASDPKQATTVAQALVDAKVKGVVGHMNSGTTIPASKIYFDAG 122 GF IGGKKV F+LV +DDASDPKQAT VA LVD KV V+GH+NSGTTIPASKIY DAG Sbjct: 62 GFTIGGKKVKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAG 121 Query: 123 IPQISPSATNPKYTQQGFNTAFRVVANDGQLGGVLGRYAVNELKGKNVAVIDDRTAYGQG 182 IPQ+SPSATNPKYTQQGF TAFRVVAND QLG LG+YAV +L K +AVIDDRTAYGQG Sbjct: 122 IPQVSPSATNPKYTQQGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQG 181 Query: 183 VAEEFRKSALAAGATIVATQYTTDKATDFNAILTSVKSKKPDLVFFGGMDAVAGPMLRQM 242 VA+EF K A AAG TIV TQYT DKATDFNAILTS+K KKPD+VFFGGMDAV GPMLRQM Sbjct: 182 VADEFAKGAKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQM 241 Query: 243 DQLGVAAKFMGGDGICTTELPSLAGAGLKDSEVVCAEAGGVTEAGKKPLEDFKAAYKKKF 302 QLG++AKFMGGDGICT LP LAG GL D +V+CAEAGGV EAGKK ++DF+AAYKKKF Sbjct: 242 KQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKKF 301 Query: 303 NQDVVIYAPYTYDALMTLADAMKQAGSSDPKVYLPVLAKIKHKGVTGEIAFDAKGDILNG 362 DVV A Y YDA MT+ADAM +AGS+DPK YLP LAKI HKGVTG IAFDAKGDI +G Sbjct: 302 GIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKDG 361 Query: 363 TLTLYTYKGGKRTLLSVVK 381 +LTLYTYKGG+RTLL+V K Sbjct: 362 SLTLYTYKGGQRTLLAVTK 380 >ref|YP_004751556.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK60733.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 383 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 261/356 (73%), Positives = 308/356 (86%) Query: 26 QEVIKIGHVAPLTGPNAHIGKDNENGARMAVDELNAKGFEIGGKKVTFQLVPQDDASDPK 85 ++++KIGHV P+TGP+AH+GKD ENGA+MAV+ELNAKG +GGKK+ F L+ +DDASDPK Sbjct: 28 EQIVKIGHVGPVTGPSAHLGKDMENGAKMAVEELNAKGITLGGKKIKFVLLAEDDASDPK 87 Query: 86 QATTVAQALVDAKVKGVVGHMNSGTTIPASKIYFDAGIPQISPSATNPKYTQQGFNTAFR 145 Q T AQ LVDAK+ GV+GH+NSGTTIPASKIY+DAGIPQISP+AT+PKYTQQGFN+ FR Sbjct: 88 QGTAAAQKLVDAKIDGVIGHLNSGTTIPASKIYYDAGIPQISPAATSPKYTQQGFNSVFR 147 Query: 146 VVANDGQLGGVLGRYAVNELKGKNVAVIDDRTAYGQGVAEEFRKSALAAGATIVATQYTT 205 VVANDGQLGG LGRYA LK KN+AVIDDRTAYGQGVA+EF K A +AG IVATQ+T Sbjct: 148 VVANDGQLGGTLGRYAATTLKAKNIAVIDDRTAYGQGVAQEFAKGAKSAGVNIVATQFTN 207 Query: 206 DKATDFNAILTSVKSKKPDLVFFGGMDAVAGPMLRQMDQLGVAAKFMGGDGICTTELPSL 265 DKATDFNAILTS+K+K PD++FFGGMDAVAGPMLRQM LG+ AKFMGGDG+CT EL L Sbjct: 208 DKATDFNAILTSIKAKNPDVIFFGGMDAVAGPMLRQMKALGIKAKFMGGDGMCTAELGKL 267 Query: 266 AGAGLKDSEVVCAEAGGVTEAGKKPLEDFKAAYKKKFNQDVVIYAPYTYDALMTLADAMK 325 AG GL + +VVCAEAGGV E+GKK LEDFKAA++KKFN +V +YAPY+YD++MT+ +AM+ Sbjct: 268 AGDGLINDQVVCAEAGGVEESGKKGLEDFKAAFQKKFNAEVKLYAPYSYDSVMTMVEAMQ 327 Query: 326 QAGSSDPKVYLPVLAKIKHKGVTGEIAFDAKGDILNGTLTLYTYKGGKRTLLSVVK 381 +A S+DPK YLP L KI HKGVTG IAFDAKGDI +GTLTLYTYK GKRTLL+V K Sbjct: 328 KANSADPKKYLPELVKIHHKGVTGMIAFDAKGDIKDGTLTLYTYKDGKRTLLTVTK 383 >ref|ZP_08273712.1| putative amino acid ABC transporter [Oxalobacteraceae bacterium IMCC9480] gb|EGF32816.1| putative amino acid ABC transporter [Oxalobacteraceae bacterium IMCC9480] Length = 383 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 284/379 (74%), Positives = 319/379 (84%), Gaps = 3/379 (0%) Query: 5 KMIPVATALVAAFSFAGAAQAQEVIKIGHVAPLTGPNAHIGKDNENGARMAVDELNAKGF 64 KMIP+A AL AF+ +AQ Q VIKIGHV P++G AH+GKDNENGA+MA+DELNAKG Sbjct: 6 KMIPLAAALAFAFAGTASAQEQ-VIKIGHVGPISGAIAHLGKDNENGAKMAIDELNAKGV 64 Query: 65 EIGGKKVTFQLVPQDDASDPKQATTVAQALVDAKVKGVVGHMNSGTTIPASKIYFDAGIP 124 IGGKKV F+L+ +DDA+DPKQ T VAQ LVDAKV GV+GH+NSGTTIPASKIY++AGIP Sbjct: 65 VIGGKKVKFELLAEDDAADPKQGTAVAQKLVDAKVNGVIGHLNSGTTIPASKIYYEAGIP 124 Query: 125 QISPSATNPKYTQQGFNTAFRVVANDGQLGGVLGRYAVNELKGKNVAVIDDRTAYGQGVA 184 QISPSATNPKYTQQGF TAFRVVANDGQLGG LGRYAV LK K VAVIDDRTAYGQGVA Sbjct: 125 QISPSATNPKYTQQGFKTAFRVVANDGQLGGTLGRYAVQVLKAKRVAVIDDRTAYGQGVA 184 Query: 185 EEFRKSAL--AAGATIVATQYTTDKATDFNAILTSVKSKKPDLVFFGGMDAVAGPMLRQM 242 EEF K A + G IVATQYT DKATDFNAILTS+KSK PD+VFFGGMDAVAGPMLRQM Sbjct: 185 EEFIKGAKGKSTGVEIVATQYTNDKATDFNAILTSIKSKNPDVVFFGGMDAVAGPMLRQM 244 Query: 243 DQLGVAAKFMGGDGICTTELPSLAGAGLKDSEVVCAEAGGVTEAGKKPLEDFKAAYKKKF 302 QLG+ AKFMGGDGICT L +LAG + D++VVCAEAGGV +A KK +EDFKAAYKKKF Sbjct: 245 KQLGINAKFMGGDGICTEALATLAGDAMADNQVVCAEAGGVEDAQKKGMEDFKAAYKKKF 304 Query: 303 NQDVVIYAPYTYDALMTLADAMKQAGSSDPKVYLPVLAKIKHKGVTGEIAFDAKGDILNG 362 DV IYAPY YD++MT+ DAM +AGS+DP Y PVLAKI+HKGVTG IAFD KGDI +G Sbjct: 305 GVDVQIYAPYVYDSVMTMVDAMVKAGSADPAKYAPVLAKIQHKGVTGNIAFDDKGDIKDG 364 Query: 363 TLTLYTYKGGKRTLLSVVK 381 TLTLY+YKGGKR L+VVK Sbjct: 365 TLTLYSYKGGKRLQLAVVK 383 >ref|YP_004751555.1| putative amino acid ABC transporter [Collimonas fungivorans Ter331] gb|AEK60732.1| putative amino acid ABC transporter [Collimonas fungivorans Ter331] Length = 380 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 269/381 (70%), Positives = 315/381 (82%), Gaps = 1/381 (0%) Query: 1 MQKIKMIPVATALVAAFSFAGAAQAQEVIKIGHVAPLTGPNAHIGKDNENGARMAVDELN 60 M KMIP+A A+ + S + AQ Q V+KI HV P+TGP AHIGKDNENGARMA++ELN Sbjct: 1 MHTTKMIPLAAAIALSLSASAHAQEQ-VVKIAHVGPITGPIAHIGKDNENGARMAIEELN 59 Query: 61 AKGFEIGGKKVTFQLVPQDDASDPKQATTVAQALVDAKVKGVVGHMNSGTTIPASKIYFD 120 +G + GKK F L+ +DDASDPKQAT VAQ LVDAKV GV+GH+NSGT+IPASKIY+D Sbjct: 60 KQGLTLDGKKTRFVLMAEDDASDPKQATAVAQKLVDAKVAGVIGHVNSGTSIPASKIYYD 119 Query: 121 AGIPQISPSATNPKYTQQGFNTAFRVVANDGQLGGVLGRYAVNELKGKNVAVIDDRTAYG 180 AGIPQISPS T+ KYTQQGFNT FRVVAND QLGG LGRYA L K AVIDDRTAYG Sbjct: 120 AGIPQISPSTTSAKYTQQGFNTTFRVVANDSQLGGALGRYAAKTLHAKTAAVIDDRTAYG 179 Query: 181 QGVAEEFRKSALAAGATIVATQYTTDKATDFNAILTSVKSKKPDLVFFGGMDAVAGPMLR 240 QG+AEEF K+A AAG TIVATQYT DKATDFNAILTS K+KKPD+VFFGG+DA AGPMLR Sbjct: 180 QGLAEEFTKAAKAAGMTIVATQYTNDKATDFNAILTSFKAKKPDVVFFGGLDAGAGPMLR 239 Query: 241 QMDQLGVAAKFMGGDGICTTELPSLAGAGLKDSEVVCAEAGGVTEAGKKPLEDFKAAYKK 300 QM QLG+ AKFMGGD ICT++LP LAG G+ + +V+CAEAGGV E+ +K L+ +K AYK Sbjct: 240 QMKQLGIQAKFMGGDAICTSDLPKLAGDGISNDQVICAEAGGVEESARKGLDAYKTAYKI 299 Query: 301 KFNQDVVIYAPYTYDALMTLADAMKQAGSSDPKVYLPVLAKIKHKGVTGEIAFDAKGDIL 360 K+ +DVVIYAPYTYDALMT+ADAM++A S+DPK YLP LAKI+HKGVTG IAFDAKGDI Sbjct: 300 KYGKDVVIYAPYTYDALMTMADAMQKAKSADPKKYLPELAKIQHKGVTGMIAFDAKGDIK 359 Query: 361 NGTLTLYTYKGGKRTLLSVVK 381 +GT+TLYTY+G +R+ L+V K Sbjct: 360 DGTITLYTYRGAQRSQLAVTK 380 >ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] emb|CAL60932.1| putative ABC-type branched-chain amino acid transport system, periplasmic component [Herminiimonas arsenicoxydans] Length = 381 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 265/379 (69%), Positives = 310/379 (81%), Gaps = 1/379 (0%) Query: 3 KIKMIPVATALVAAFSFAGAAQAQEVIKIGHVAPLTGPNAHIGKDNENGARMAVDELNAK 62 K KMIP+A AL A + AAQ Q VIKIG VAP+TG +AH+GKDNENGARMAV++LNAK Sbjct: 4 KSKMIPLAGALAFALAGGAAAQEQ-VIKIGSVAPITGTDAHMGKDNENGARMAVEDLNAK 62 Query: 63 GFEIGGKKVTFQLVPQDDASDPKQATTVAQALVDAKVKGVVGHMNSGTTIPASKIYFDAG 122 G IGGKKV FQL+ +DDASDPKQAT AQ LVDA V V+GH+NSGTTIPAS+IY +AG Sbjct: 63 GTTIGGKKVKFQLLAEDDASDPKQATAAAQKLVDAGVVAVIGHLNSGTTIPASRIYANAG 122 Query: 123 IPQISPSATNPKYTQQGFNTAFRVVANDGQLGGVLGRYAVNELKGKNVAVIDDRTAYGQG 182 IPQ+SPSATNPKYTQQGF TAFRVVAND QLG VLG+YAV L GK+VAVIDDRTAYGQG Sbjct: 123 IPQVSPSATNPKYTQQGFKTAFRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYGQG 182 Query: 183 VAEEFRKSALAAGATIVATQYTTDKATDFNAILTSVKSKKPDLVFFGGMDAVAGPMLRQM 242 VA+EF K AAG +IVA+QYT +KATDFN+ILTS+K+KKPD++FFGGMDAV GPMLRQM Sbjct: 183 VADEFAKGVKAAGGSIVASQYTNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQM 242 Query: 243 DQLGVAAKFMGGDGICTTELPSLAGAGLKDSEVVCAEAGGVTEAGKKPLEDFKAAYKKKF 302 QLG+ AKFMGGDGICT LP LAG L D++VVCAEAGGV EA +K +EDF+A+YKK+F Sbjct: 243 KQLGINAKFMGGDGICTGSLPGLAGTALGDNQVVCAEAGGVPEARRKGVEDFRASYKKRF 302 Query: 303 NQDVVIYAPYTYDALMTLADAMKQAGSSDPKVYLPVLAKIKHKGVTGEIAFDAKGDILNG 362 +VV A Y YDA + +AMK+A S +P YLP LAK + G+TG IAFDAKGDI +G Sbjct: 303 GVEVVYTAAYAYDATNAVVEAMKKANSWEPAKYLPELAKSNYPGITGTIAFDAKGDIKDG 362 Query: 363 TLTLYTYKGGKRTLLSVVK 381 TLTLYT++GGKR +L+V K Sbjct: 363 TLTLYTFRGGKREMLAVTK 381