BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2676.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemo... 258 7e-67 gb|EGW61617.1| transcriptional regulator, LysR family [Dechloros... 252 4e-65 ref|ZP_07774094.1| transcriptional regulator, LysR family [Pseud... 234 9e-60 gb|AEG69208.1| transcriptional regulator of glycine cleavage sys... 233 2e-59 ref|ZP_00946798.1| Transcriptional regulators, LysR family [Rals... 231 8e-59 >ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI76725.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 132/292 (45%), Positives = 200/292 (68%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDR+TA +VFVTV ++GSL AA+ LEM+AAMVSRYL +LE W+ RLLHRTTR+++LT+ Sbjct: 1 MDRITAAQVFVTVAERGSLIQAADHLEMSAAMVSRYLVSLEDWLGARLLHRTTRRVTLTD 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG AL SCRQLL +++++ LSQ PRGRLR+ F + LTPAL+ +Q+R+P+ Sbjct: 61 AGRLALPSCRQLLETADDVKHIAGNLSQEPRGRLRLTCALSFAEAQLTPALMAYQQRYPQ 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 + +S+ +++ +++ D++DL++ IS+ LEP LIA+ L T ++CA+P YLR HGTP++ Sbjct: 121 VHISLATTDLGINLAADQIDLAVRISNSLEPTLIARPLATCRSVLCASPEYLRRHGTPAT 180 Query: 181 VEDLHQHAFITHSQLTVGKRRLRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAILPE 240 V++L H + H+ ++ + R R + ++ + FT NE I+ A+L G G+ ILP Sbjct: 181 VDELPHHRCLAHALVSATQFRFRQGDKVVEPTVDVSFTTNETAILRRALLSGGGIGILPT 240 Query: 241 AYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFA 292 Y+ +L G LV +L + L HAV+LSRQHQP+AL+ L+ +L+E F Sbjct: 241 YYVSEDLRRGELVPLLKDYQLETLGIHAVFLSRQHQPLALRLLVDFLAEQFG 292 >gb|EGW61617.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 308 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 139/295 (47%), Positives = 191/295 (64%), Gaps = 2/295 (0%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRLTA +VFV V D+GSLT AAE L+M+AAMVSRYLAA+E W RLLHRTTRK+SLT+ Sbjct: 1 MDRLTAVRVFVEVADRGSLTQAAEHLDMSAAMVSRYLAAVEDWFDARLLHRTTRKVSLTD 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG AAL SCRQLL I+ ++ P G LR+ T F LT AL FQ++ + Sbjct: 61 AGLAALPSCRQLLEIATEARHLAAARNREPAGVLRVTTAGSFADAQLTAALADFQRQHEQ 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 +E+ + + D+ +R+DL++ I++ L+P +IA+ L ++CA PAYL +G P + Sbjct: 121 VEIVLSVGDKPTDLVAERVDLAVRITNTLDPAMIARPLARCRSLLCAAPAYLERYGKPET 180 Query: 181 VEDLHQHAFITHSQLTVGKR-RLRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAILP 239 EDL +H I H+ +GK+ R NG +L P+ F NE ++ AVL GAG+ +LP Sbjct: 181 AEDLQRHRCIAHA-FGIGKQYRFTRNGADLAVPVNWSFHTNETAVLRRAVLCGAGIGMLP 239 Query: 240 EAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFAHD 294 Y+ +L GRLV +LP P+ L HA+YLSRQHQP+AL+ L+ +L+E FA D Sbjct: 240 TYYLGDDLGAGRLVPLLPDHEPEVLGIHAIYLSRQHQPLALRLLVDFLAERFAGD 294 >ref|ZP_07774094.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gb|EFQ64858.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 301 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 128/294 (43%), Positives = 179/294 (60%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRL A +VFVTVVD GS + AA+ L+++ +VSRYLA LE W+ RLLHRTTRK+SLT Sbjct: 1 MDRLQAMRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTA 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG L CRQLL + +++A +PRG LR++ FG+ L A+ + KR+P Sbjct: 61 AGSETLPRCRQLLELCGDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPL 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 + + + + T+++ +R+DL+I S+ L+PNLIA+RL ++CATPAYLREH P Sbjct: 121 VTVDLQMLDRTVNLVDERIDLAIRTSNDLDPNLIARRLTVCRSVVCATPAYLREHPAPQK 180 Query: 181 VEDLHQHAFITHSQLTVGKRRLRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAILPE 240 VEDL +H +THS NG + P+ TANEA +L L G G+A+LP Sbjct: 181 VEDLARHNCLTHSYFGKSLWHFEENGEHVSVPVHGNITANEASTLLRVTLAGVGVAMLPS 240 Query: 241 AYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFAHD 294 + G LVR+LP V P + +AVY SR+H P AL+ L+ YL + F + Sbjct: 241 YQAGDHIRRGELVRLLPQVEPRQMNIYAVYASRKHMPSALRSLLDYLVQRFPEE 294 >gb|AEG69208.1| transcriptional regulator of glycine cleavage system operon, lysr family [Ralstonia solanacearum Po82] Length = 300 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 129/302 (42%), Positives = 188/302 (62%), Gaps = 6/302 (1%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRLTA +VFV +VD+GSLT AA+ L+M+ AMV+RYLA +E+W RLLHRTTR+I LT Sbjct: 1 MDRLTAAEVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTP 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG+A L CRQ+L I+ + + + +PRG LR+A + + +L A+ + +R+P+ Sbjct: 61 AGEATLARCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPD 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 + +V N T+++ ++R+DL++ I++ L+PNLIA+ LGT ++CA PAYL HGTP Sbjct: 121 TAIDLVVDNRTVNLVEERIDLAVRITNDLDPNLIARPLGTCESVVCAAPAYLTAHGTPRR 180 Query: 181 VEDLHQHAFITHSQLTVGKRRLRL----NGRELDFPLRQRFTANEAGIILAAVLEGAGLA 236 VEDL H +T+S GK R G P+ +ANE+ +LAAV GAG+ Sbjct: 181 VEDLAVHNCLTYSYF--GKSLWRFTEAGTGEPAAVPVGGNLSANESMALLAAVKAGAGIG 238 Query: 237 ILPEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFAHDGE 296 + P +A G+LVR+LP P L H VY SR+ P AL+ ++ +L+E F Sbjct: 239 MQPAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWFRRRPN 298 Query: 297 AA 298 AA Sbjct: 299 AA 300 >ref|ZP_00946798.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] ref|YP_002259597.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] gb|EAP70714.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] emb|CAQ61529.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] Length = 300 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 127/295 (43%), Positives = 186/295 (63%), Gaps = 6/295 (2%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRLTA +VFV +VD+GSLT AA+ L+M+ AMV+RYLA +E+W RLLHRTTR+I LT Sbjct: 1 MDRLTAAEVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTP 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG+A L CRQ+L I+ + + + +PRG LR+A + + +L A+ + +R+P+ Sbjct: 61 AGEATLARCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPD 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 + +V N T+++ ++R+DL++ I++ L+PNLIA+ LGT ++CA PAYL HGTP Sbjct: 121 TAIDLVVDNRTVNLVEERIDLAVRITNDLDPNLIARPLGTCESVVCAAPAYLAAHGTPRR 180 Query: 181 VEDLHQHAFITHSQLTVGKRRLRL----NGRELDFPLRQRFTANEAGIILAAVLEGAGLA 236 VEDL H +T+S GK R G P+ +ANE+ +LAAV GAG+ Sbjct: 181 VEDLAVHNCLTYSYF--GKSLWRFTEARTGEPAVVPVGGNLSANESMALLAAVKAGAGIG 238 Query: 237 ILPEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHF 291 + P +A G+LVR+LP P L H VY SR+ P AL+ ++ +L+E F Sbjct: 239 MQPAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWF 293