BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2674.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776623.1| methyl-accepting chemotaxis transducer trans... 703 0.0 ref|YP_004753016.1| methyl-accepting chemotaxis sensory transduc... 549 e-154 emb|CAQ18656.1| methyl-accepting chemotaxis transducer protein [... 548 e-154 ref|ZP_00945262.1| Probable transmembrane methyl-accepting chemo... 538 e-151 emb|CBJ38403.1| methyl-accepting chemotaxis transducer transmemb... 537 e-150 >ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64715.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 418/517 (80%), Positives = 465/517 (89%) Query: 6 MDKLSFSKKLWLPLVLSLTALLAISIFSALVLRDVRLEERKNDLANISHAALSMVKAYAA 65 M +LSF+KKLWLPLVLSL ALLAISIFSA+++R++RLEERK DL NI ALS+VK Y A Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 66 QAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDP 125 A+SGA+SKE+AQ A+ A+KS+RYG GYF+++ S Q+I++HPIK EL+GKD++N KDP Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 126 VGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDIN 185 G +LF+EITKA KP+G FV+Y+WPKVG A+PVPKT+FVIAYKPWDWNLTTGAY+DDIN Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 186 AAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAEVVNRIAQGDLTPNID 245 AAF+RTL QMA+LF V+ ALVAL+IVIN ILRTIGGDPA AAEV NRIAQGDLTPNI+ Sbjct: 181 AAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 Query: 246 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEEQAGSLE 305 T PGD SSLLYAVR MRDSLLSTI NIK+SA TIASAS EIA GNLDLSGRTE+QAGS+E Sbjct: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 Query: 306 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMERITDSSRKITD 365 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVV QVVQTME ITDSSRKI D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 Query: 366 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDD 425 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 Query: 426 SVEKIDTGSRLVEEAGTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEG 485 SV K+DTGS+LVE+AG TMTEVVASVRRVTDIVGEIS+ASQEQSAGIAEVGRA+ MDEG Sbjct: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 Query: 486 TQQNAALVEEAAAAAQSLQDQATTLAGLVARFRIDAS 522 TQQNAALVE+AAAAAQSLQDQA TLAGLV RF +D S Sbjct: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGS 517 >ref|YP_004753016.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK62193.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 575 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 331/516 (64%), Positives = 421/516 (81%) Query: 6 MDKLSFSKKLWLPLVLSLTALLAISIFSALVLRDVRLEERKNDLANISHAALSMVKAYAA 65 M++LSF++KLWLPL++SL AL +IS+F+A R +RL+ERK+DL N+S+ A++++K Y A Sbjct: 24 MNRLSFTQKLWLPLLVSLVALFSISVFNAYQARQIRLDERKSDLVNVSNVAMNVIKEYGA 83 Query: 66 QAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDP 125 A SGA+ K EAQ +A A LK++RYG GYF+V+ S++V+++HPIKPEL+G+ M++ KDP Sbjct: 84 MAASGALGKSEAQQQALARLKAMRYGKDGYFSVSTSNEVMVMHPIKPELDGRKMSDFKDP 143 Query: 126 VGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDIN 185 G +F+ I+KA + G F+NY+WP+VG A+ VPK +F + Y+PWDW TTG Y+DD+N Sbjct: 144 DGNLVFVLISKAGSQSGGGFINYVWPRVGAAEAVPKMSFALGYQPWDWIATTGIYVDDLN 203 Query: 186 AAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAEVVNRIAQGDLTPNID 245 AF+++L Q + + VA+ALVAL+I NRS+L IGGDP AA++ NRIA GDL+ +I Sbjct: 204 RAFMQSLYQAGAILLAVALALVALVIYSNRSMLAAIGGDPGHAADIANRIAGGDLSLDIA 263 Query: 246 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEEQAGSLE 305 T+PGD SL+YA++ MR SLL TI NIKSSA TIA+AS +IA GNLDLS RTE+QAGSLE Sbjct: 264 TRPGDTRSLVYAMKCMRASLLHTITNIKSSADTIATASGQIASGNLDLSSRTEQQAGSLE 323 Query: 306 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMERITDSSRKITD 365 ETASAME+LT+TVKQNADNARQANQLA +AS+VA +VV QVV TM I SS+KI D Sbjct: 324 ETASAMEQLTSTVKQNADNARQANQLAVTASQVASNSSAVVSQVVDTMGNIRSSSKKIVD 383 Query: 366 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDD 425 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK+LIDD Sbjct: 384 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKVLIDD 443 Query: 426 SVEKIDTGSRLVEEAGTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEG 485 SV ++ +GSRLVE+AG TM EVV SV+RVTDI+GEI+ ASQEQS+GI +V A+ MDE Sbjct: 444 SVSQVGSGSRLVEQAGATMGEVVTSVKRVTDIIGEIATASQEQSSGIEQVNHAITQMDEV 503 Query: 486 TQQNAALVEEAAAAAQSLQDQATTLAGLVARFRIDA 521 TQQNAALVE+AAAAA SLQ+QA +LA +V+ F+ D+ Sbjct: 504 TQQNAALVEQAAAAAASLQEQAVSLAQMVSVFKTDS 539 >emb|CAQ18656.1| methyl-accepting chemotaxis transducer protein [Ralstonia solanacearum MolK2] Length = 744 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 319/517 (61%), Positives = 394/517 (76%) Query: 6 MDKLSFSKKLWLPLVLSLTALLAISIFSALVLRDVRLEERKNDLANISHAALSMVKAYAA 65 M KLSF +KLWLPL SL AL +S+F A R +R+EERKN+L +++ AL++VK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLLSVFYAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 66 QAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDP 125 G ++KEEAQ +A +++RY GYF + S V+++HPIKPE GKD + KD Sbjct: 61 LVRGGLLTKEEAQKQALERFRALRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 126 VGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDIN 185 G S+++ +T AA +P+G F +Y+WP VG + VPKT + + Y+PWDW +TGAY+DDIN Sbjct: 121 QGNSVYVNLTGAARQPNGGFTSYVWPHVGGTELVPKTAYALRYEPWDWVFSTGAYMDDIN 180 Query: 186 AAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAEVVNRIAQGDLTPNID 245 AAF+ +L + L ++ LV L V NR + RT+GGDPA AAEV NRIA GDL+ I Sbjct: 181 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGLQRTLGGDPAYAAEVANRIAGGDLSVEIA 240 Query: 246 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEEQAGSLE 305 T+P D+ SLLYA+ MR +L+ TI I+ ++ TI +A+ EIA GNLDLS RTE+QA SLE Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 306 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMERITDSSRKITD 365 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VV +VV+TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 360 Query: 366 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDD 425 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 426 SVEKIDTGSRLVEEAGTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEG 485 SV +D GS LVEEAGTTM E+VASVRRVTDIVGEI+AASQEQ +GI EV AV +D+ Sbjct: 421 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 486 TQQNAALVEEAAAAAQSLQDQATTLAGLVARFRIDAS 522 TQQNAALVE+AAAAAQSLQ+QA +L +VA+FR+D + Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPT 517 >ref|ZP_00945262.1| Probable transmembrane methyl-accepting chemotaxis protein [Ralstonia solanacearum UW551] gb|EAP72229.1| Probable transmembrane methyl-accepting chemotaxis protein [Ralstonia solanacearum UW551] Length = 644 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 319/517 (61%), Positives = 394/517 (76%) Query: 6 MDKLSFSKKLWLPLVLSLTALLAISIFSALVLRDVRLEERKNDLANISHAALSMVKAYAA 65 M KLSF +KLWLPL SL AL +S+F A R +R+EERKN+L +++ AL++VK Y Sbjct: 13 MSKLSFRQKLWLPLAFSLIALTLLSVFYAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 72 Query: 66 QAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDP 125 G ++KEEAQ +A +++RY GYF + S V+++HPIKPE GKD + KD Sbjct: 73 LVRGGVLTKEEAQKQALERFRALRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQSGFKDA 132 Query: 126 VGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDIN 185 G S+++ +T AA +P+G F +Y+WP VG + VPKT + + Y+PWDW +TGAY+DDIN Sbjct: 133 QGNSVYVNLTGAARQPNGGFTSYVWPHVGGTELVPKTAYALRYEPWDWVFSTGAYMDDIN 192 Query: 186 AAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAEVVNRIAQGDLTPNID 245 AAF+ +L + L ++ LV L V NR + RT+GGDPA AAEV NRIA GDL+ I Sbjct: 193 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGLQRTLGGDPAYAAEVANRIAGGDLSVEIA 252 Query: 246 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEEQAGSLE 305 T+P D+ SLLYA+ MR +L+ TI I+ ++ TI +A+ EIA GNLDLS RTE+QA SLE Sbjct: 253 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 312 Query: 306 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMERITDSSRKITD 365 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VV +VV+TM I SSRKI D Sbjct: 313 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 372 Query: 366 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDD 425 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LIDD Sbjct: 373 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 432 Query: 426 SVEKIDTGSRLVEEAGTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEG 485 SV +D GS LVEEAGTTM E+VASVRRVTDIVGEI+AASQEQ +GI EV AV +D+ Sbjct: 433 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 492 Query: 486 TQQNAALVEEAAAAAQSLQDQATTLAGLVARFRIDAS 522 TQQNAALVE+AAAAAQSLQ+QA +L +VA+FR+D + Sbjct: 493 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPT 529 >emb|CBJ38403.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum CMR15] Length = 619 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 322/517 (62%), Positives = 393/517 (76%) Query: 6 MDKLSFSKKLWLPLVLSLTALLAISIFSALVLRDVRLEERKNDLANISHAALSMVKAYAA 65 M KLSF +KLWLPL SL AL +S+F+A R +R+EERKN+L +++ AL++VK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 66 QAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDP 125 A G ++KE AQ +A +S+RY GYF + S V+++HPIKPE GKD T KD Sbjct: 61 LARGGVLTKEAAQQQALERFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 120 Query: 126 VGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDIN 185 G S+++ +T AA +P+G F +Y+WP VG VPKT F Y+PWDW +TGAY+DDIN Sbjct: 121 QGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDIN 180 Query: 186 AAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAEVVNRIAQGDLTPNID 245 AAF+ +L + L ++ LV L V NR + RT+GGDPA AAEV NRIA GDL+ I Sbjct: 181 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGVQRTLGGDPAYAAEVANRIAGGDLSVEIA 240 Query: 246 TQPGDQSSLLYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEEQAGSLE 305 T+P D+ SLLYA+ MR +L+ T+ IK ++ TI +A+ EIA GNLDLS RTE+QA SLE Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTLGRIKGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 306 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMERITDSSRKITD 365 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VV +VV+TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 360 Query: 366 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDD 425 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 426 SVEKIDTGSRLVEEAGTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEG 485 SV +D GS LVEEAGTTM E+VASVRRVTDIVGEI+AASQEQ +GI EV AV +D+ Sbjct: 421 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 486 TQQNAALVEEAAAAAQSLQDQATTLAGLVARFRIDAS 522 TQQNAALVE+AAAAAQSLQ+QA +L +VA+FR+D + Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPT 517