BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2673.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777106.1| methyl-accepting chemotaxis transducer trans... 603 e-170 ref|YP_003776875.1| methyl-accepting chemotaxis transducer trans... 573 e-161 ref|YP_003775129.1| methyl-accepting chemotaxis transducer trans... 470 e-130 ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herba... 448 e-123 ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemor... 419 e-115 >ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65198.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 393/522 (75%), Positives = 450/522 (86%), Gaps = 3/522 (0%) Query: 15 NMKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLA 74 +M F+ +KIGT+LSL FAL L LT++LA ISL SI LT SIKAAD VQ +RLLPL+LA Sbjct: 8 SMSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLA 67 Query: 75 REALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKG 134 REALDQTG+AARNAYVF+++ADAQKEL IVDEQ+Q+YLKAL+DMEPHF G+ F+++R G Sbjct: 68 REALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTG 127 Query: 135 LLKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDAT 194 LL+MAEELKRPRIYRESG+ EEFRDFLV ECSPLRR+IV DINK+I+E A+N+ AH T Sbjct: 128 LLQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTT 187 Query: 195 VSTATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIV 254 V A A+ +V VLT +VA+IS +VAF +TRS+L+QLGGEPAYAA IAQ+IA+GDLTA V Sbjct: 188 VDMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADV 247 Query: 255 ETKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVL 314 + K GDT+SLL+AIKKMRD L IV KVREGT+AIEQASAEIATGN DLSSRTEQQAG L Sbjct: 248 DAKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGAL 307 Query: 315 EAAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIV 374 E AS+ME+LM+TVKQNA+NAR+AS+LAVSAS VA QGG VV +VVSTMEGINASSRKIV Sbjct: 308 EETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIV 367 Query: 375 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIK 434 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT LI Sbjct: 368 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIN 427 Query: 435 DSVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEE 494 DSV QIEQGS+LVGQAGATME+VV SV+RVT V+AEIS+A+QEQS GIAQVN AI+ M+E Sbjct: 428 DSVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDE 487 Query: 495 TTQQNSALVEEAASAAGSMSEQAGVLARLVSIFKME---APG 533 TQQNSALVEEAA+AA SM QA LA LVS FK+ APG Sbjct: 488 ATQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPG 529 >ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64967.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 369/513 (71%), Positives = 439/513 (85%) Query: 19 FRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAREAL 78 F+ +KIGT+L+L F + LT+L++ ISLSSIR+LT SIKA AVQ+Q+L PL+ AREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 79 DQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGLLKM 138 DQTGIAARNAYVF+SDADAQKEL IVDEQ+QLYLKA++D+ P FAGN +FE++R G+L+M Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 139 AEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATVSTA 198 AEELKRPR+YRESGRSEE+RDFLV ECSPLRR+IV DI ++ +V AEN A DAT A Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 199 THAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVETKS 258 AA+ V VLT VV +IS+++A +TR +L+QLGGEP YAA IAQ+IA GDLTA V+TK+ Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 259 GDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLEAAA 318 GD SSLL+AIK MRD LV IV++VR+GT+ IEQAS+EIA+GN DLSSRTEQQA LE A Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 319 SSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVDIIG 378 S+ME+LM TVKQNA+NA++AS+LAVSAS VA QGG VVA+VV+TM+GINASSRKIVDII Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 379 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKDSVA 438 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT LI DSV+ Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVS 421 Query: 439 QIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEETTQQ 498 QIE+GS+LV QAG TME+VV SV+RVT V+AEIS A+QEQS GI QVN AI+ M+E TQQ Sbjct: 422 QIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQ 481 Query: 499 NSALVEEAASAAGSMSEQAGVLARLVSIFKMEA 531 NSALVEEAA+AA SM EQAG L+ LV+ F+++A Sbjct: 482 NSALVEEAAAAANSMKEQAGALSGLVATFRLDA 514 >ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63221.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 314/520 (60%), Positives = 400/520 (76%), Gaps = 1/520 (0%) Query: 16 MKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAR 75 MK E+KIG +LSL FA L L + L A ++ I SL +I A+ ++N++L PL+LAR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 76 EALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGL 135 EALDQTGIAARNAYVF SDADA+ EL IVDEQ+ +YL+ L+ +EP A F +R+GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 136 LKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATV 195 L+MAEELKRPR YR+SG E +RDFLV ECSPLRRKIV +IN++ID++ AE+ TA D Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 196 STATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVE 255 + A A + + +L + LI+V++AF +TRS+L+QLGGEPAYA IAQ+IA GDL V Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 256 TKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLE 315 T+S D SSLLYAIK MRD L IV++VR+GT +IE+A +EI++GN DLS RTE+QA LE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 316 AAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVD 375 AS+MEQ+ + V+Q+A+NA +A++LA SAS +A +GG ++ +VV+TME I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 376 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKD 435 II VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI LI Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 436 SVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEET 495 SVA++E GS LV AG TM ++V SVQ V+ V+AEI+ +++EQS GI QVN AIS M+E Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 496 TQQNSALVEEAASAAGSMSEQAGVLARLVSIFKMEAPGTL 535 TQQNSALVE++A+AA +++ QA LARLVS FK+ AP L Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV-APDAL 519 >ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ66075.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 287/514 (55%), Positives = 377/514 (73%) Query: 16 MKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAR 75 M +LKIGT+L L F + + L ++L +L + +++ +++ + V + +L PL++AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 76 EALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGL 135 EALDQTG+AARNAY+F A+A KEL ++D+Q+ LYL ALR +EP AG FE+ + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 136 LKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATV 195 L MAEELKRPR YRESG+ E + +FLV ECSPLRR+IVQDI+ ++ V E A D Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 196 STATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVE 255 + + ++ +++ +S+ A+ + +S+L QLGGEP YA I +IA G+L+A V+ Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 256 TKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLE 315 T GD SSLLY I+ MRD L +V +VR GT+AI AS+EIA GN +LS RTEQQA LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 316 AAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVD 375 ++M++L V++NA+NA++A LA SAS VA Q G VV +VV TM I+ASSRKIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 376 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKD 435 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EI LI Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 436 SVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEET 495 SV+ + GS LV QAGATM+DVV SVQRV++V+ EIS A+Q QS GI +VN AI+R++E Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 496 TQQNSALVEEAASAAGSMSEQAGVLARLVSIFKM 529 TQQN+ALVEEAA+A+ SMS+QA L +LV FK+ Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKL 514 >ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR90626.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 282/514 (54%), Positives = 371/514 (72%), Gaps = 5/514 (0%) Query: 19 FRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAREAL 78 F +K+G++LSL F ++ LT+L+A +L I + I + ++ Q+L L+ AREAL Sbjct: 2 FANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREAL 61 Query: 79 DQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGLLKM 138 QTG+AARNAY+F + ADA KEL I+DEQ+ +YL AL M P F G+ +FE++ KGLL M Sbjct: 62 GQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLLTM 121 Query: 139 AEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATVSTA 198 AEELKRPR +R++ + E F FLV ECSPLRR+IV DI ++ + A Sbjct: 122 AEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVKSQEANLAA 181 Query: 199 THAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVETKS 258 + ++ +++V L+S+ + ++RSI + L A +AQ +A+GDLT+ + KS Sbjct: 182 QQSITIIIAISAVALLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVKS 237 Query: 259 GD-TSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLEAA 317 D T LL A+K M L+ IV +VR GT + AS +IA+GN DLSSRTE+QA LE Sbjct: 238 KDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEET 297 Query: 318 ASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVDII 377 ASSME+L +TVKQNA+NAR+A+ L++SAS +A +GG VV+EVV TM GIN S++KI DII Sbjct: 298 ASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDII 357 Query: 378 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKDSV 437 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI LI DSV Sbjct: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSV 417 Query: 438 AQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEETTQ 497 +++ GS LV QAG+TM +VV SV+RVT +MAEI A+QEQS GI QVNQAI++M+ TQ Sbjct: 418 GRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQ 477 Query: 498 QNSALVEEAASAAGSMSEQAGVLARLVSIFKMEA 531 QN+ALVEEAA+AAGS+ +QA L + VS+FK++A Sbjct: 478 QNAALVEEAAAAAGSLKDQAVKLEQTVSVFKIDA 511