BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2672.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemo... 263 3e-68 gb|EGW61617.1| transcriptional regulator, LysR family [Dechloros... 244 1e-62 emb|CAQ35605.1| hypothetical protein RSMK00713 [Ralstonia solana... 219 3e-55 ref|ZP_06686641.1| LysR family transcriptional regulator [Achrom... 219 4e-55 ref|ZP_00946798.1| Transcriptional regulators, LysR family [Rals... 219 5e-55 >ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI76725.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 135/290 (46%), Positives = 199/290 (68%) Query: 1 MDRLKATKVFVTVVEQGSLTGAADYLEMTTAMVSRYLASLESWLNVRLLHRTTRKISLTE 60 MDR+ A +VFVTV E+GSL AAD+LEM+ AMVSRYL SLE WL RLLHRTTR+++LT+ Sbjct: 1 MDRITAAQVFVTVAERGSLIQAADHLEMSAAMVSRYLVSLEDWLGARLLHRTTRRVTLTD 60 Query: 61 AGEAALETCRELLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPE 120 AG AL +CR+LL A+ ++H + NL+Q PRGRLR+ + E + P L+A+Q+RYP+ Sbjct: 61 AGRLALPSCRQLLETADDVKHIAGNLSQEPRGRLRLTCALSFAEAQLTPALMAYQQRYPQ 120 Query: 121 VEYTVIVDPSPADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRT 180 V ++ ++AA++IDL++R+S+ LEP LIAR L V+CASPEYLR HG P T Sbjct: 121 VHISLATTDLGINLAADQIDLAVRISNSLEPTLIARPLATCRSVLCASPEYLRRHGTPAT 180 Query: 181 ANDLKNRVFITHMMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPT 240 ++L + + H +V T+ + R + ++ + F+TN+T+++R A + G G+ I+PT Sbjct: 181 VDELPHHRCLAHALVSATQFRFRQGDKVVEPTVDVSFTTNETAILRRALLSGGGIGILPT 240 Query: 241 SVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEH 290 + ++L GELV ++ + + ++A +LSRQHQPLAL+LL DFL E Sbjct: 241 YYVSEDLRRGELVPLLKDYQLETLGIHAVFLSRQHQPLALRLLVDFLAEQ 290 >gb|EGW61617.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 308 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 128/289 (44%), Positives = 188/289 (65%) Query: 1 MDRLKATKVFVTVVEQGSLTGAADYLEMTTAMVSRYLASLESWLNVRLLHRTTRKISLTE 60 MDRL A +VFV V ++GSLT AA++L+M+ AMVSRYLA++E W + RLLHRTTRK+SLT+ Sbjct: 1 MDRLTAVRVFVEVADRGSLTQAAEHLDMSAAMVSRYLAAVEDWFDARLLHRTTRKVSLTD 60 Query: 61 AGEAALETCRELLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPE 120 AG AAL +CR+LL A H ++ + P G LR+ T + + + L FQR++ + Sbjct: 61 AGLAALPSCRQLLEIATEARHLAAARNREPAGVLRVTTAGSFADAQLTAALADFQRQHEQ 120 Query: 121 VEYTVIVDPSPADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRT 180 VE + V P D+ AER+DL++R+++ L+P +IAR L ++CA+P YL +G P T Sbjct: 121 VEIVLSVGDKPTDLVAERVDLAVRITNTLDPAMIARPLARCRSLLCAAPAYLERYGKPET 180 Query: 181 ANDLKNRVFITHMMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPT 240 A DL+ I H + + NG L + + F TN+T+V+R A + GAG+ ++PT Sbjct: 181 AEDLQRHRCIAHAFGIGKQYRFTRNGADLAVPVNWSFHTNETAVLRRAVLCGAGIGMLPT 240 Query: 241 SVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPE 289 + +L +G LV ++P P+ + ++A YLSRQHQPLAL+LL DFL E Sbjct: 241 YYLGDDLGAGRLVPLLPDHEPEVLGIHAIYLSRQHQPLALRLLVDFLAE 289 >emb|CAQ35605.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2] Length = 300 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 120/296 (40%), Positives = 180/296 (60%), Gaps = 2/296 (0%) Query: 1 MDRLKATKVFVTVVEQGSLTGAADYLEMTTAMVSRYLASLESWLNVRLLHRTTRKISLTE 60 MDRL A +VFV +V++GSLT AAD L+M+ AMV+RYLA +E+W RLLHRTTR+I LT Sbjct: 1 MDRLTAAEVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTP 60 Query: 61 AGEAALETCRELLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPE 120 AGEA L CR++L A + + T TPRG LR+A + ++++ + A+ RRYP+ Sbjct: 61 AGEATLARCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPD 120 Query: 121 VEYTVIVDPSPADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRT 180 ++VD ++ ERIDL++R+++ L+PNLIAR LG V+CA+P YL HG PR Sbjct: 121 TAIDLVVDNRTVNLVEERIDLAVRITNDLDPNLIARPLGSCESVVCAAPAYLAAHGTPRR 180 Query: 181 ANDL--KNRVFITHMMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIV 238 DL N + ++ + + GEP + +G + S N++ + A GAG+ + Sbjct: 181 VEDLAVHNCLTYSYFGKSLWRFTEARTGEPAAVPVGGNLSANESMALLAAVKAGAGIGMQ 240 Query: 239 PTSVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHIRKI 294 P +ASG+LV ++P VP + ++ Y SR+ P AL+ + DFL E R++ Sbjct: 241 PAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWFRRL 296 >ref|ZP_06686641.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF76531.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 301 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 116/291 (39%), Positives = 178/291 (61%) Query: 1 MDRLKATKVFVTVVEQGSLTGAADYLEMTTAMVSRYLASLESWLNVRLLHRTTRKISLTE 60 MDRLKA +VFV V ++GSL+ AA +L+M+ AMVSRYLA +E W+ VRLLHRTTR++SLT Sbjct: 1 MDRLKAMQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTP 60 Query: 61 AGEAALETCRELLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPE 120 AG L CR++L + S TPRG LRI T + G R + + + +++P Sbjct: 61 AGAETLPRCRQMLDMVGDLRSAVSTPEDTPRGLLRITTSMSFGARHLASAVTDYVKQHPG 120 Query: 121 VEYTVIVDPSPADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRT 180 +++ ++ ER+DL++R+++ L+PNLIARKL V+CASPEYL G+P Sbjct: 121 TSVDLMLVERAVNLVEERVDLAVRITNDLDPNLIARKLAVCRSVVCASPEYLSREGVPAR 180 Query: 181 ANDLKNRVFITHMMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPT 240 DL R +TH + + +G+P+D+ + + S N+ S++ AA+EGAG+ ++PT Sbjct: 181 VEDLSLRNCLTHSYFGKSLWRFERDGQPVDVPVSGNISANEVSMLLQAALEGAGIAMLPT 240 Query: 241 SVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHI 291 + +A+G L ++P P + +Y Y SR+ PL L+ + DFL E + Sbjct: 241 YYANEYIAAGRLKAILPQCKPQELGIYGVYASRRQMPLILRSMLDFLVERL 291 >ref|ZP_00946798.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] ref|YP_002259597.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] gb|EAP70714.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] emb|CAQ61529.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] Length = 300 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 120/296 (40%), Positives = 180/296 (60%), Gaps = 2/296 (0%) Query: 1 MDRLKATKVFVTVVEQGSLTGAADYLEMTTAMVSRYLASLESWLNVRLLHRTTRKISLTE 60 MDRL A +VFV +V++GSLT AAD L+M+ AMV+RYLA +E+W RLLHRTTR+I LT Sbjct: 1 MDRLTAAEVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTP 60 Query: 61 AGEAALETCRELLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPE 120 AGEA L CR++L A + + T TPRG LR+A + ++++ + A+ RRYP+ Sbjct: 61 AGEATLARCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPD 120 Query: 121 VEYTVIVDPSPADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRT 180 ++VD ++ ERIDL++R+++ L+PNLIAR LG V+CA+P YL HG PR Sbjct: 121 TAIDLVVDNRTVNLVEERIDLAVRITNDLDPNLIARPLGTCESVVCAAPAYLAAHGTPRR 180 Query: 181 ANDL--KNRVFITHMMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIV 238 DL N + ++ + + GEP + +G + S N++ + A GAG+ + Sbjct: 181 VEDLAVHNCLTYSYFGKSLWRFTEARTGEPAVVPVGGNLSANESMALLAAVKAGAGIGMQ 240 Query: 239 PTSVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHIRKI 294 P +ASG+LV ++P VP + ++ Y SR+ P AL+ + DFL E R++ Sbjct: 241 PAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWFRRL 296