BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2669.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774370.1| transcription regulator protein [Herbaspiril... 276 3e-72 ref|YP_003777812.1| LysR family transcription regulator protein ... 253 3e-65 ref|YP_003774716.1| transcription regulator protein [Herbaspiril... 219 7e-55 emb|CBJ41279.1| Putative HTH-type transcriptional activator aaeR... 186 5e-45 ref|ZP_00944140.1| Transcriptional regulators, LysR family [Rals... 184 2e-44 >ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62462.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 143/299 (47%), Positives = 202/299 (67%) Query: 29 MNTNATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEA 88 M NA DY R++IFSRV ELG ++AA EL L+ +++ QHI +LE +L T+LLH Sbjct: 1 MKNNAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRK 60 Query: 89 LHLTESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFI 148 L LTE+G SFY+ C I++ +EA + +SL+KE+ G++ IA SSFMAS++L+P L +FI Sbjct: 61 LSLTEAGHSFYANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFI 120 Query: 149 RTHPRLHIAIDISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGP 208 R HP+L I ID++D +L++ DLALRVGK +S +DV LA L +LCA+P YLR P Sbjct: 121 RAHPKLRINIDVNDHNIDLMDKSVDLALRVGKTSSENDVYLASLPAVLCASPAYLRAHAP 180 Query: 209 IRQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGV 268 IR PEDL + L F P+GS E++L++R GQ L PR+ NHA+ L +LALQG GV Sbjct: 181 IRHPEDLPQHDFLFFTPHGSSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGHGV 240 Query: 269 ACLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQHQ 327 A L ++ EDL AGRL VL +W FLT++Y++ P +I+ C+ H++AYF+ + Sbjct: 241 ARLLACKVQEDLDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFRSR 299 >ref|YP_003777812.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 137/299 (45%), Positives = 193/299 (64%) Query: 29 MNTNATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEA 88 + + DY R++IFSRV E+G+ + AA L LS +++ QHI +LE + +LLH Sbjct: 2 IKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRK 61 Query: 89 LHLTESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFI 148 L LTE+G++FY+ C I+ NEA + ++L+KEV G++ IA SSFMAS++L+P L+ I Sbjct: 62 LSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLI 121 Query: 149 RTHPRLHIAIDISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGP 208 + +P+L I ID++D +L+E G D+ALR GK +DV LA L ++LCAAP YL+ P Sbjct: 122 QQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAP 181 Query: 209 IRQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGV 268 IR PEDL+ + F P GS EL L+DR GQQ ++ PRI NH L +L LQG GV Sbjct: 182 IRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGV 241 Query: 269 ACLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQHQ 327 A L ++ EDL AGRL VL EWT FL++ Y+D P ++LVC+ HIQ YF+ + Sbjct: 242 ARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQDYFRRR 300 >ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62808.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 113/287 (39%), Positives = 172/287 (59%) Query: 39 RVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHLTESGKSF 98 R+ F+RV ELG + AA L L+ +++ QH+ +LE L+ +LL+ L LTE+G F Sbjct: 11 RMATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLF 70 Query: 99 YSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTHPRLHIAI 158 Y +C HI+ +EA +++ LN E+ G+V IA+SSFM++ +L+P L +FIR +P++ + + Sbjct: 71 YKHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRL 130 Query: 159 DISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGPIRQPEDLLEQ 218 +++D +L+E DLALR G+ D+ L +LCA+P YL PI P DLL Sbjct: 131 EVADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHH 190 Query: 219 HLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGVACLPINQIGE 278 LLF P+G L + A ++ PRI NHA+ L LAL G G+ L +I + Sbjct: 191 DFLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIDD 250 Query: 279 DLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQ 325 DL AGRL+ VL +WT V++T R++D P ++ C+ HIQ YF+ Sbjct: 251 DLRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFE 297 >emb|CBJ41279.1| Putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum CMR15] Length = 301 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 2/295 (0%) Query: 32 NATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHL 91 N D R+ IF+RV ELG AA EL L+ ++I QH+ +LET L +LLH L L Sbjct: 2 NNMDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALETELGVTLLHRSTRKLSL 61 Query: 92 TESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTH 151 TE+G+ +Y C ++++ + + L E G++ I S +A L+P L++FI H Sbjct: 62 TEAGRVYYEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAH 121 Query: 152 PRLHIAIDISDAPGELLENGADLALRVG--KRNSVDDVLLAELGTILCAAPEYLRTMGPI 209 PRL I ++ D +L+E+ DLA+R+G + +S+ +A ++CAAPEYL + Sbjct: 122 PRLAIRFELGDEKIDLVEHRVDLAVRIGELQDSSLVARRIAWFDELICAAPEYLERVAVP 181 Query: 210 RQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGVA 269 P+ L + L+F P G + L+D G + L+ R+ TN AQ L L L G GVA Sbjct: 182 ATPQGLADLDWLIFTPLGEPAFVQLRDGQGHEARLRVHGRLATNQAQTLKALTLDGHGVA 241 Query: 270 CLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYF 324 L IG +LA GRL+P+L EW A V+ + +D P ++ C+ H++AYF Sbjct: 242 RLLKVDIGAELAQGRLVPLLPEWRLAGFGVYAITPRRDAQPLKVTRCIEHLRAYF 296 >ref|ZP_00944140.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gb|EAP73360.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 326 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 2/295 (0%) Query: 32 NATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHL 91 N D R+ IF+RV ELG AA EL L+ ++I QH+ +LE L +LLH L L Sbjct: 27 NNMDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSL 86 Query: 92 TESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTH 151 TE+G+ +Y C ++++ + + +L E G++ I S +A L+P L++FI H Sbjct: 87 TEAGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAH 146 Query: 152 PRLHIAIDISDAPGELLENGADLALRVG--KRNSVDDVLLAELGTILCAAPEYLRTMGPI 209 PRL + ++ D +L+E+ DLA+R+G + +S+ +A ++CAAP YL GP Sbjct: 147 PRLAVRFELGDEKIDLVEHRVDLAVRIGELRDSSLVARQIAWFDELICAAPAYLERTGPP 206 Query: 210 RQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGVA 269 P+ L + L+F P G + L++ G + L+ R+ TN AQ L LAL G GVA Sbjct: 207 TTPQALADLDWLIFTPLGEPAFVHLRNTQGHEVRLRVHGRLATNQAQTLKALALDGHGVA 266 Query: 270 CLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYF 324 L IG +LA GRL+P+L +W A V+ + +D P ++ C+ H++ YF Sbjct: 267 RLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHLRTYF 321