BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2665.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 479 e-133 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 288 1e-75 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 242 8e-62 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 239 8e-61 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 235 9e-60 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 287/408 (70%), Positives = 339/408 (83%), Gaps = 8/408 (1%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAVDASLSYTNKIATDGKNTGSLTAVESGLVK 60 MKKSLLALAVLGAFAGAAHAQSSSITIYGA+DASL+YTNKIATDGKNTGSLTAVESGLVK Sbjct: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGLVK 60 Query: 61 GSRLGVKGSEDLGGGIKALFTIENGFSVDTGEAGQKGVLWGRQATVGLSGNFGTVLVGRQ 120 GSRLG+KGSEDLGGG+KA+FT+ENGF+VDTGEAGQ ++WGRQ TVGLSGNFGTVLVGRQ Sbjct: 61 GSRLGIKGSEDLGGGLKAVFTLENGFNVDTGEAGQGKLMWGRQTTVGLSGNFGTVLVGRQ 120 Query: 121 NDILGEIGGISSAGDFGGVVSRVHSQNLDRTNGERVNNSIRYNTPNFGGFSGSVIYGFGE 180 ND L +IGGI+SAG F GV VHS+ LDRT+G+R+NNSIRYN+PNF G S S IYGFGE Sbjct: 121 NDPLNDIGGIASAGGF-GVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIYGFGE 179 Query: 181 QAGNTGAGQSFGLGGTYANGPLNIGLGYFQSKMGGKS--ASDVNGAAACNGGGK---YGD 235 Q G G+S GLG Y NGPL++GLGYFQSKMGG S +SDVN AACNG G+ GD Sbjct: 180 QVGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGSDGSSDVNAKAACNGAGEKDHAGD 239 Query: 236 TCLKTWTLAAAYQFGPARVYGSYSRVKLPLTAARRSFDPKFDSFAAWTDPNKKIERYDAV 295 TCLKTWTLAAAYQFGPA+VYG++S V+LPL A + K ++F A D K Y+ Sbjct: 240 TCLKTWTLAAAYQFGPAKVYGAFSHVRLPL-AKLHTKVRKDNNFGAMYDA-KTGTGYNPS 297 Query: 296 EKGDYTIGGANNESSQTLDLGVNYRISPSLSLISSLQYTRAKFVRTVDGRLLQINLGAKY 355 + ++IGGAN++SSQT D+G++Y++ PSL+L+S++Q+TRAKFV GRLLQ+NLGAKY Sbjct: 298 DATAFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGAASGRLLQLNLGAKY 357 Query: 356 DLSKRTSTYAVIRNLRTSDMYSVGLSSDRVPGANRSQTGINAGLIHTF 403 DLSKRTS YA++RNLR+SDMY+VGLS D+ PG +RSQT I+ GLIHTF Sbjct: 358 DLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 197/411 (47%), Positives = 254/411 (61%), Gaps = 29/411 (7%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAVDASLSYTNKIATDGKNTGSLTAVESGLVK 60 MKKSL+ALAVLGA A SS+TIYG VD + YT+K T TGS ++ SG+++ Sbjct: 1 MKKSLIALAVLGA-IAGAAQAQSSVTIYGIVDTGIVYTSKALTSTGGTGSKFSINSGIIQ 59 Query: 61 GSRLGVKGSEDLGGGIKALFTIENGFSVDTGE-AGQKGV--LWGRQATVGLSGNFGTVLV 117 GSRLG KG EDLGGG+KALF +E GF+ DTG G KG L+ R++ VGL GNFG+VL+ Sbjct: 60 GSRLGFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTTTLFRRKSVVGLGGNFGSVLL 119 Query: 118 GRQNDILGEIGGISSAGDFGGVVSRVHSQNLDRTNGERVNNSIRYNTPNFGGFSGSVIYG 177 GRQ DIL ++ +S DFGGV V NLDR G R NNSIRYNTP+ GF+GS+IYG Sbjct: 120 GRQTDILDDVSQWTSVQDFGGVTGSV-GHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIYG 178 Query: 178 FGEQAGNTGAGQSFGLGGTYANGPLNIGLGYFQSKMGGKSASD---VNGAAACNGGGKYG 234 FGE AG T AGQSFG G YANGPL + Y+QSK+G +ASD +NG+ N GK G Sbjct: 179 FGETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVANFSGKSG 238 Query: 235 DTCLKTWTLAAAYQFGPARVYGSYSRVKLPLTAARRSFDPKFDSFAAWTDPNKKIERYDA 294 DT LKT+++ A+YQ GPAR+YG++SR K PL + S Sbjct: 239 DTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGI------------------ 280 Query: 295 VEKGDYTIGGANNESSQTLDLGVNYRISPSLSLISSLQYTRAKFVR--TVDGRLLQINLG 352 ++ G +T+G NN + +LGVNY ++ L L++S+QY + F G+L Q NLG Sbjct: 281 LQPGSFTVGSFNNTKADIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLG 340 Query: 353 AKYDLSKRTSTYAVIRNLRTSDMYSVGLSSDRVPGANRSQTGINAGLIHTF 403 Y LSKRT YA + NLR D + G+ D + G +QT + G+ H F Sbjct: 341 TDYFLSKRTDLYAFVSNLRAKDAVNPGVYGDSL-GDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 176/412 (42%), Positives = 235/412 (57%), Gaps = 51/412 (12%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAVDASLSYTNKIATDGKNTGSLTAVESGLVK 60 MKK++ ALA LG A AQ++ +TIYG +DA L+YT+K+ G S +++SG + Sbjct: 1 MKKTVFALAALGLIGANAQAQTN-VTIYGVIDAGLTYTSKV---GPKNDSRISLDSGDMA 56 Query: 61 GSRLGVKGSEDLGGGIKALFTIENGFSVDTGEAGQKGVLWGRQATVGLSGNFGTVLVGRQ 120 SR+G +G+EDLGGG+KA+F +ENGF+ D G L+ R+A VGLSG+FGTV +GRQ Sbjct: 57 TSRIGFRGTEDLGGGLKAIFQLENGFNADDGSLATASTLFDRKAVVGLSGSFGTVTLGRQ 116 Query: 121 NDILGEIGG-ISSAGDFGGV-VSRVHSQNLDRTNGERVNNSIRYNTPNFGGFSGSVIYGF 178 D L +IG +S FG + H NLDR G R NNSIRY++ N GF+GS+ YGF Sbjct: 117 TDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSLFYGF 176 Query: 179 GEQAGNTGAGQSFGLGGTYANGPLNIGLGYFQSKMGGKSASDVNGAAACNGGGKYGDTCL 238 GE AG T AGQSFGL G YANGP IGLGYFQ+K+ + K GDT L Sbjct: 177 GEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAADALPS-----------KAGDTDL 225 Query: 239 KTWTLAAAYQFGPARVYGSYSRVKLPLTAARRSFDPKFDSFAAWTDPNKKIERYDAVEKG 298 KT+TL A+YQ GPA++YG++S+ K PL AA + G Sbjct: 226 KTFTLGASYQAGPAKIYGAWSQTKRPLAAALAA-------------------------TG 260 Query: 299 DYTIGGANNESSQTLDLGVNYRISPSLSLISSLQYTRAKFVR----TVDGRLLQINLGAK 354 I A + DLGV+Y +S +L L++S+ Y RA R + G+ Q+NLG Sbjct: 261 LVNITTATK--ANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVD 318 Query: 355 YDLSKRTSTYAVIRNLRTSDMYSVGL---SSDRVPGANRSQTGINAGLIHTF 403 Y LSKRT YA+ N R +D+ + G+ + P + SQ GL H F Sbjct: 319 YYLSKRTDLYALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 182/422 (43%), Positives = 247/422 (58%), Gaps = 54/422 (12%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAVDASLSYTNKIATDGKN----TGSLTAVES 56 MKKSLLALAVLGA A SS+TIYG VD ++Y++K+ N TGS + S Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINS 59 Query: 57 GLVKGSRLGVKGSEDLGGGIKALFTIENGFSVDTG-----EAGQKGVLWGRQATVGLSGN 111 G+++GSR+G KG EDLGGG+ A+F +E GF+ D G +A L+ R++ VGLSG Sbjct: 60 GVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGG 119 Query: 112 FGTVLVGRQNDILGEIGGISSAGDFGGVVSRVHSQNLDRTNGERVNNSIRYNTPNFGGFS 171 FGTVL+GRQ D I ++ DFGGVV+ S +L+R G R NNS+ Y T N GF+ Sbjct: 120 FGTVLLGRQTDFADTISAYTAVADFGGVVANSGS-SLNRLQGTRTNNSVSYTTANLSGFT 178 Query: 172 GSVIYGFGEQAGNTGAGQSFGLGGTYANGPLNIGLGYFQSKMGGKSASDVN------GAA 225 G++IYGFGEQAG T AGQ++G+GG Y NGPL +G+ Y+QSK G + SD + Sbjct: 179 GNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSK-AGSTPSDTSLIPAAGATN 237 Query: 226 ACNGGGKYGDTCLKTWTLAAAYQFGPARVYGSYSRVKLPLTAARRSFDPKFDSFAAWTDP 285 A G G+T LK+ + A+YQFGPARVY +YSRVK L Sbjct: 238 ANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDL-------------------- 277 Query: 286 NKKIERYDAVEKGDYTIGG---ANNESSQTLDLGVNYRISPSLSLISSLQYTRAKFVR-T 341 KG T+ AN + + T ++G Y +SPSL L++++ ++RA F Sbjct: 278 -----------KGTPTVATATLANAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVN 326 Query: 342 VDGRLLQINLGAKYDLSKRTSTYAVIRNLRTSDMYSVGLSSDRVPGANRSQTGINAGLIH 401 G+L QI+LGA Y LSKRT YA + N+R SD+ + G++ G++ SQT I G+ H Sbjct: 327 TKGKLTQISLGADYFLSKRTDLYAFVSNMRASDIQNPGVTGG-ATGSDASQTAIITGIRH 385 Query: 402 TF 403 F Sbjct: 386 KF 387 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 173/411 (42%), Positives = 236/411 (57%), Gaps = 29/411 (7%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAVDASLSYTNKIATDGKNTGSLTAVESGLVK 60 MKKSLLALAVLGA A SS+TIYG VD + Y +K+AT TGS ++ SG+++ Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGVVYQSKVATPTGGTGSKFSLNSGVIQ 59 Query: 61 GSRLGVKGSEDLGGGIKALFTIENGFSVDTG---EAGQKGVLWGRQATVGLSGNFGTVLV 117 GSR+G KG+EDLGGG+ A+F +E GFS DTG ++ L+ R++ VGL+GNFG+VL+ Sbjct: 60 GSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLAGNFGSVLL 119 Query: 118 GRQNDILGEIGGISSAGDFGGVVSRVHSQNLDRTNGERVNNSIRYNTPNFGGFSGSVIYG 177 GRQ D I +S DFGG NLDR G R NNSI Y T N GF+G+++YG Sbjct: 120 GRQTDFADTISSYTSVQDFGGWTGAA-GHNLDRLEGTRTNNSISYTTANLNGFTGNLMYG 178 Query: 178 FGEQAGNTGAGQSFGLGGTYANGPLNIGLGYFQSKMGGKSAS----DVNGAAACNGGGKY 233 FGE AG T AGQ+FG+GG Y NGPL +G+ Y+QSK G A G G Sbjct: 179 FGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLLAATGTNQFTNGTNN 238 Query: 234 GDTCLKTWTLAAAYQFGPARVYGSYSRVKLPLTAARRSFDPKFDSFAAWTDPNKKIERYD 293 G T K +AA+YQFGPARVYG++SRVK L S A T N+ + Sbjct: 239 GSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLA--TISNRTL---- 292 Query: 294 AVEKGDYTIGGANNESSQTLDLGVNYRISPSLSLISSLQYTRAKFVRTV-DGRLLQINLG 352 A + + ++G Y +SPSL L++++ +TRA+F +L Q++LG Sbjct: 293 -----------AASNKADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLG 341 Query: 353 AKYDLSKRTSTYAVIRNLRTSDMYSVGLSSDRVPGANRSQTGINAGLIHTF 403 Y LSKRT YA + + +D+ + G++ G + +Q + G+ H F Sbjct: 342 TDYWLSKRTDLYAFLAYSKATDLNNPGVADSS--GTDGNQGAVAVGIRHKF 390