BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2663.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspi... 307 5e-82 ref|YP_004754370.1| methionine ABC transporter permease [Collimo... 270 1e-70 ref|ZP_03271075.1| binding-protein-dependent transport systems i... 251 4e-65 ref|YP_004028389.1| ABC transporter permease [Burkholderia rhizo... 251 7e-65 ref|YP_003605787.1| binding-protein-dependent transport systems ... 249 2e-64 >ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62510.1| ABC-type metal ion transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 215/217 (99%), Positives = 217/217 (100%) Query: 1 MSSELIDLFVNSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVAFNRIAGLLV 60 MSSELIDLFV+SFGETLMMVVISGVVGSLLGIPLGIALHITE+KGVLPNVAFNRIAGLLV Sbjct: 1 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLV 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV Sbjct: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR Sbjct: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >ref|YP_004754370.1| methionine ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK63547.1| Methionine ABC transporter permease protein [Collimonas fungivorans Ter331] Length = 217 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 188/217 (86%), Positives = 208/217 (95%) Query: 1 MSSELIDLFVNSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVAFNRIAGLLV 60 MSSE++DLF++SFGETLMMV ISG++G+LLG+PLGIALH+T GVLP+ FNR+AGL+V Sbjct: 1 MSSEMLDLFLSSFGETLMMVGISGILGALLGVPLGIALHLTGRDGVLPHPLFNRVAGLIV 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIP TRFFVGTSIGTAAAIVPLTIA+APFIARLVETALREV+ GL+ Sbjct: 61 NAVRSTPFIILLVAVIPFTRFFVGTSIGTAAAIVPLTIASAPFIARLVETALREVERGLI 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATTWQI+YKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTWQIVYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVML VV+ILIVFVQLVQ+LGD+LVR+LSHR Sbjct: 181 YQRFLPEVMLLVVVILIVFVQLVQTLGDILVRRLSHR 217 >ref|ZP_03271075.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. H160] gb|EDZ97345.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. H160] Length = 217 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 172/217 (79%), Positives = 198/217 (91%) Query: 1 MSSELIDLFVNSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVAFNRIAGLLV 60 M SE+ D+FV SF ETL+MV ISG++G+++G+PLG+ L++T+ +GVL NVA NR+ G++V Sbjct: 1 MLSEMFDMFVQSFWETLIMVGISGLIGAVVGVPLGVLLYLTDRQGVLENVAVNRVMGVIV 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIP TR VG+SIGTAAAIVPLTIAAAPFIARLVETALREVD GL+ Sbjct: 61 NAVRSTPFIILLVAVIPFTRLVVGSSIGTAAAIVPLTIAAAPFIARLVETALREVDRGLI 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATT QI++KVL+PE+ G+VAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTSQIVFKVLLPESLPGVVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVMLAVVLILIVFVQLVQS GD LVR+LSH+ Sbjct: 181 YQRFLPEVMLAVVLILIVFVQLVQSFGDWLVRRLSHK 217 >ref|YP_004028389.1| ABC transporter permease [Burkholderia rhizoxinica HKI 454] emb|CBW74245.1| ABC transporter permease protein [Burkholderia rhizoxinica HKI 454] Length = 217 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 167/217 (76%), Positives = 192/217 (88%) Query: 1 MSSELIDLFVNSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVAFNRIAGLLV 60 M SE+ D+FV SF ETL+MV ISGV+G +G+PLG+ LH++E GVL NV NR+ G+ + Sbjct: 1 MWSEMFDMFVQSFWETLIMVGISGVIGGAIGLPLGVLLHLSERGGVLQNVLLNRVLGMTI 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIP TR VG+SIGT AA+VPLTIAAAPF+ARLVETALREVD GL+ Sbjct: 61 NAVRSTPFIILLVAVIPFTRLVVGSSIGTVAAVVPLTIAAAPFVARLVETALREVDRGLI 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATT Q+++KVL+PEA+ GIVAGLT+TFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTSQVVFKVLLPEAWPGIVAGLTLTFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVM AVVL+LIVFVQLVQS GD LVR+LSH+ Sbjct: 181 YQRFLPEVMFAVVLVLIVFVQLVQSFGDYLVRRLSHK 217 >ref|YP_003605787.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] gb|ADG16276.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 217 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 171/217 (78%), Positives = 197/217 (90%) Query: 1 MSSELIDLFVNSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVAFNRIAGLLV 60 M SE+ D+FV SF ETL+MV ISG++G+++G+PLG+ L++T+ +GVL NVA NR+ G++V Sbjct: 1 MLSEMFDMFVQSFWETLIMVGISGLIGAVVGVPLGVLLYLTDRQGVLENVAVNRVMGVIV 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIP TR VG+SIGTAAAIVPLTIAAAPFIARLVETALREVD GL+ Sbjct: 61 NAVRSTPFIILLVAVIPFTRLVVGSSIGTAAAIVPLTIAAAPFIARLVETALREVDRGLI 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGAT QI++KVL+PE+ G+VAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATASQIVFKVLLPESLPGVVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVMLAVVLILIVFVQLVQS GD LVR+LSH+ Sbjct: 181 YQRFLPEVMLAVVLILIVFVQLVQSFGDWLVRRLSHK 217