BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2661.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774416.1| GTP-binding protein [Herbaspirillum seropedi... 597 e-168 ref|YP_001354343.1| hypothetical protein mma_2653 [Janthinobacte... 492 e-137 gb|AAV68373.1| putative GTPase [Herminiimonas arsenicoxydans] 484 e-135 ref|YP_004754377.1| 50S ribosomal subunit maturation GTPase [Col... 457 e-127 ref|YP_001100802.1| putative GTPase [Herminiimonas arsenicoxydan... 449 e-124 >ref|YP_003774416.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62508.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 308/318 (96%), Positives = 315/318 (99%) Query: 1 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN Sbjct: 1 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60 Query: 61 KTDMADPVATQAWIDYYNSQKGVTAVALSCKKPSDVARVPKLAIQVAPHRGTALKPLRMM 120 KTDMADPVATQAWIDYYNSQKGV AVALSCKKPSDVARVPKLA+QVAPHRGTALKPLRMM Sbjct: 61 KTDMADPVATQAWIDYYNSQKGVMAVALSCKKPSDVARVPKLAMQVAPHRGTALKPLRMM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180 Query: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK Sbjct: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240 Query: 241 RGFRLKGGEYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYQSTDNPDALQAEDE 300 RGFRLKGG+YDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATY+STDNPDAL AEDE Sbjct: 241 RGFRLKGGDYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYRSTDNPDALPAEDE 300 Query: 301 EEDDEDYDWRDAPDHRGR 318 E+++EDYDWR+APDHR R Sbjct: 301 EDEEEDYDWRNAPDHRER 318 >ref|YP_001354343.1| hypothetical protein mma_2653 [Janthinobacterium sp. Marseille] gb|ABR89802.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 315 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 240/308 (77%), Positives = 275/308 (89%) Query: 1 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60 MSIQW+PGHMN+AR+KAAE+MEK DM+IEV+DAR+PQAS NPMIE+LR RQRPCLKILN Sbjct: 1 MSIQWYPGHMNAARKKAAEAMEKTDMIIEVLDARVPQASRNPMIEELRTFRQRPCLKILN 60 Query: 61 KTDMADPVATQAWIDYYNSQKGVTAVALSCKKPSDVARVPKLAIQVAPHRGTALKPLRMM 120 K+D+ADP ATQ W+D YNSQKGV AVALSCKKPSDVA++P L +++APHRGTALKPLR+M Sbjct: 61 KSDLADPAATQKWLDLYNSQKGVHAVALSCKKPSDVAKIPGLCLKIAPHRGTALKPLRIM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180 IMGIPNVGKSTLMNALLKKRVA VGDEPAVTK QQRLYLGNNMVLTDTPGM+WPKIEHPS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYLGNNMVLTDTPGMMWPKIEHPS 180 Query: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240 DGLMLAASHA+GSNALIEEEVATFLAD++L YPQLL ARYGF TEG+DGV+V+EGVA + Sbjct: 181 DGLMLAASHAIGSNALIEEEVATFLADIVLMHYPQLLTARYGFPTEGIDGVSVIEGVALR 240 Query: 241 RGFRLKGGEYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYQSTDNPDALQAEDE 300 RGFR+KGGE D EKAAHTFLQDYR GALGR+SLETP+SR LLA++Q + + +D+ Sbjct: 241 RGFRIKGGELDLEKAAHTFLQDYRVGALGRVSLETPESRIALLASFQPPPSLSDVANDDD 300 Query: 301 EEDDEDYD 308 EE +E D Sbjct: 301 EETEESRD 308 >gb|AAV68373.1| putative GTPase [Herminiimonas arsenicoxydans] Length = 316 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 238/318 (74%), Positives = 277/318 (87%), Gaps = 5/318 (1%) Query: 1 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60 MSIQW+PGHMN+AR+KAAE+MEKVDM+IEV+DAR+PQASCNPMIE+LR RQRPCLKILN Sbjct: 1 MSIQWYPGHMNAARKKAAEAMEKVDMIIEVLDARVPQASCNPMIEELRTFRQRPCLKILN 60 Query: 61 KTDMADPVATQAWIDYYNSQKGVTAVALSCKKPSDVARVPKLAIQVAPHRGTALKPLRMM 120 K+D+ADP ATQ W+D+YN QK V AVALSCKKPSDVA++P L++++APHRGTALKPLR+M Sbjct: 61 KSDLADPAATQQWLDFYNKQKNVHAVALSCKKPSDVAKIPALSMKIAPHRGTALKPLRIM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180 IMGIPNVGKSTLMNALLKKRVA VGDEPAVTK QQRLYLGNN+VLTDTPGM+WPKI +PS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYLGNNIVLTDTPGMMWPKIAYPS 180 Query: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240 DGLMLAASHA+GSNALIEEEVATFLAD++L RYP L+ ARYG TEG+DGV+V+EGVA + Sbjct: 181 DGLMLAASHAIGSNALIEEEVATFLADIILARYPALVAARYGMKTEGIDGVSVIEGVAVR 240 Query: 241 RGFRLKGGEYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYQSTDNPDALQ--AE 298 RG R+KGGE D EKAAH FLQDYR+G LGRISLETP+SR ELL T+Q P +L A+ Sbjct: 241 RGLRIKGGELDLEKAAHIFLQDYRTGLLGRISLETPESRVELLTTFQP---PPSLSDVAD 297 Query: 299 DEEEDDEDYDWRDAPDHR 316 + ED + + DA HR Sbjct: 298 ESAEDAPEENRDDAFSHR 315 >ref|YP_004754377.1| 50S ribosomal subunit maturation GTPase [Collimonas fungivorans Ter331] gb|AEK63554.1| 50S ribosomal subunit maturation GTPase [Collimonas fungivorans Ter331] Length = 303 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 227/278 (81%), Positives = 250/278 (89%) Query: 10 MNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILNKTDMADPVA 69 MN+AR+KAAE+MEKVD+VIEV+D RLPQASCNPMIEQLR RQRPCLKILNK+D+ADP Sbjct: 1 MNAARKKAAEAMEKVDLVIEVLDGRLPQASCNPMIEQLRVFRQRPCLKILNKSDLADPAV 60 Query: 70 TQAWIDYYNSQKGVTAVALSCKKPSDVARVPKLAIQVAPHRGTALKPLRMMIMGIPNVGK 129 TQAWI YYNSQK V AVALSCKKPSDVA++P L + +APHRGT LKPLRMMIMGIPNVGK Sbjct: 61 TQAWIAYYNSQKNVHAVALSCKKPSDVAKIPGLCLTLAPHRGTPLKPLRMMIMGIPNVGK 120 Query: 130 STLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPSDGLMLAASH 189 STLMNALLK+RVAAVGDEPAVTK QQRLYLGNNMVL DTPGMLWPKI HPSDGLMLAASH Sbjct: 121 STLMNALLKRRVAAVGDEPAVTKVQQRLYLGNNMVLIDTPGMLWPKIAHPSDGLMLAASH 180 Query: 190 AVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAKRGFRLKGGE 249 A+G+NALIEEEVATFLAD LL RY LL ARYG T+G+DGV+V+EGVA +RGFRLKGG+ Sbjct: 181 AIGTNALIEEEVATFLADELLIRYAPLLAARYGIKTDGIDGVSVIEGVAVRRGFRLKGGD 240 Query: 250 YDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYQ 287 D EKAAHT LQDYR+GALGRISLETPQ+RA LLA +Q Sbjct: 241 LDLEKAAHTLLQDYRTGALGRISLETPQTRAALLARHQ 278 >ref|YP_001100802.1| putative GTPase [Herminiimonas arsenicoxydans] emb|CAL62681.1| Putative GTPase [Herminiimonas arsenicoxydans] Length = 296 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 222/298 (74%), Positives = 257/298 (86%), Gaps = 5/298 (1%) Query: 21 MEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILNKTDMADPVATQAWIDYYNSQ 80 MEKVDM+IEV+DAR+PQASCNPMIE+LR RQRPCLKILNK+D+ADP ATQ W+D+YN Q Sbjct: 1 MEKVDMIIEVLDARVPQASCNPMIEELRTFRQRPCLKILNKSDLADPAATQQWLDFYNKQ 60 Query: 81 KGVTAVALSCKKPSDVARVPKLAIQVAPHRGTALKPLRMMIMGIPNVGKSTLMNALLKKR 140 K V AVALSCKKPSDVA++P L++++APHRGTALKPLR+MIMGIPNVGKSTLMNALLKKR Sbjct: 61 KNVHAVALSCKKPSDVAKIPALSMKIAPHRGTALKPLRIMIMGIPNVGKSTLMNALLKKR 120 Query: 141 VAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPSDGLMLAASHAVGSNALIEEE 200 VA VGDEPAVTK QQRLYLGNN+VLTDTPGM+WPKI +PSDGLMLAASHA+GSNALIEEE Sbjct: 121 VAKVGDEPAVTKMQQRLYLGNNIVLTDTPGMMWPKIAYPSDGLMLAASHAIGSNALIEEE 180 Query: 201 VATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAKRGFRLKGGEYDFEKAAHTFL 260 VATFLAD++L RYP L+ ARYG TEG+DGV+V+EGVA +RG R+KGGE D EKAAH FL Sbjct: 181 VATFLADIILARYPALVAARYGMKTEGIDGVSVIEGVAVRRGLRIKGGELDLEKAAHIFL 240 Query: 261 QDYRSGALGRISLETPQSRAELLATYQSTDNPDALQ--AEDEEEDDEDYDWRDAPDHR 316 QDYR+G LGRISLETP+SR ELL T+Q P +L A++ ED + + DA HR Sbjct: 241 QDYRTGLLGRISLETPESRVELLTTFQP---PPSLSDVADESAEDAPEENRDDAFSHR 295