BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2659.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774414.1| LysR family transcription regulator protein ... 481 e-134 ref|YP_004752504.1| LysR family transcriptional regulator [Colli... 384 e-105 ref|ZP_06689244.1| LysR family transcriptional regulator [Achrom... 361 9e-98 gb|EGP48041.1| LysR family regulatory helix-turn-helix protein 1... 352 6e-95 gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxi... 348 7e-94 >ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62506.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 260/287 (90%), Positives = 274/287 (95%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 MDWDNARIFLAIYRVGTLRGAAE LE+DQAT GRRLAALE SLGARLFLRTP+GYVPTPA Sbjct: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GEMAAAAA QMEQGAEQLQRQMQG+DERLCGVVRLAATD+TARHFL+PALHRLRQEHP I Sbjct: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 RVVLSTSTQITNLTKREADIAVRT+RPDAPDLIARHLKRLHT +YAS++YVKKRGLP+PG Sbjct: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 TGLKGHDVVIY RSVSP+KSEQICGESI +A VAMEVSTGLVMYD LQAGFG+GELPTHV Sbjct: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHV 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAIIAAYEA 287 GDK SGLVR+WPQR PYDMWLVLHSDLNRTARVRAVADAIIAAYEA Sbjct: 241 GDKASGLVRVWPQRETPYDMWLVLHSDLNRTARVRAVADAIIAAYEA 287 >ref|YP_004752504.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61681.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 288 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 191/282 (67%), Positives = 233/282 (82%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 MDWD+ARIFL IYR GTLRGAA L++DQATAGRRL +E +LGARLFLRTP+GYVPTPA Sbjct: 1 MDWDSARIFLGIYRAGTLRGAAALLQVDQATAGRRLNGMEQALGARLFLRTPTGYVPTPA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE+A AAA +ME A+QLQRQMQG+D+RLCGVVRLA TD +HFL+ A+ RL HP I Sbjct: 61 GELAFAAAERMEHAADQLQRQMQGIDDRLCGVVRLATTDTMGKHFLMVAMQRLHAVHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 RVVLSTSTQ++NLT+READ+AVRT+RP +PDLI+RHL R G+YA+K+Y+K RG P P Sbjct: 121 RVVLSTSTQVSNLTRREADLAVRTIRPSSPDLISRHLTRREVGLYAAKSYLKLRGEPLPD 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 T L GHD+VIY RS+SPS+ +CGE++ +A VAMEV++GL+M ++++AG GIGELPTH+ Sbjct: 181 TALAGHDLVIYQRSISPSQGVALCGEAVGNARVAMEVNSGLMMIEAVRAGLGIGELPTHM 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAII 282 D L RIWPQRA YD+WLVLH DLNRTARVRAVADAI+ Sbjct: 241 ADSDPLLARIWPQRAEAYDIWLVLHGDLNRTARVRAVADAIV 282 >ref|ZP_06689244.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73881.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 289 Score = 361 bits (926), Expect = 9e-98, Method: Composition-based stats. Identities = 180/286 (62%), Positives = 224/286 (78%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 MDWDNARIFLAIYRVGTLRGAA L+IDQATAGRRLAALESSL ARLFLRTP GYVPTPA Sbjct: 1 MDWDNARIFLAIYRVGTLRGAAALLQIDQATAGRRLAALESSLDARLFLRTPGGYVPTPA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE+A AAA +MEQ A+QLQRQMQG+D RL GVVR+AA++ A +F++ A+ R++ +HP I Sbjct: 61 GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVAASETVASYFVMEAVRRVQAQHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 RVVLS S QI+NLT+READ+A+R ++PD PDLI RHL R G+YAS+ Y+ G P PG Sbjct: 121 RVVLSASIQISNLTRREADLAIRNLKPDNPDLIQRHLARKEVGLYASRGYLAAHGEPRPG 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 T GH +V Y ++V P S+ CGE + +A+E+++G+++ ++ AG GIGELPTH+ Sbjct: 181 TAFAGHTLVTYQQAVLPGWSDTFCGEPTGNGRIAIELNSGMMILAAVAAGLGIGELPTHM 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAIIAAYE 286 LVRIWP RA PYD+WLV+H DLNRTARVRAVADAI+ +E Sbjct: 241 APDYPDLVRIWPGRAEPYDLWLVMHGDLNRTARVRAVADAIVEVFE 286 >gb|EGP48041.1| LysR family regulatory helix-turn-helix protein 158 [Achromobacter xylosoxidans AXX-A] Length = 288 Score = 352 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 181/287 (63%), Positives = 224/287 (78%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 MDWDNARIFLAIYR GTLRGAA L+IDQATAGRRLAALE+SL ARLFLRTPSGYVPT A Sbjct: 1 MDWDNARIFLAIYRNGTLRGAAALLQIDQATAGRRLAALETSLDARLFLRTPSGYVPTAA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE A AAA +MEQ A+QLQRQMQG+D RL GVVR+A ++ A HF++ A+ RL +HP I Sbjct: 61 GEQAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASHFIMEAVRRLHLQHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 R+ LSTS Q++NLT+READ+A+R V+PD PDLI RHL R G+YASK+Y+ RG P G Sbjct: 121 RIALSTSIQLSNLTRREADLAIRNVKPDNPDLIHRHLARRDVGLYASKSYIAARGEPRQG 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 T GH +V Y +SV P S+ CGE + ++AME+++GL++ +++ AG GIGELP H+ Sbjct: 181 TAFAGHTLVTYQQSVLPGWSDTFCGEPTGNGHIAMELNSGLMIIEAVAAGLGIGELPVHM 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAIIAAYEA 287 + LVRIWP R+ PYD+WLV+H DLNRTARVRAVADAI+ +EA Sbjct: 241 APQYPDLVRIWPHRSEPYDLWLVMHGDLNRTARVRAVADAIVEVFEA 287 >gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 288 Score = 348 bits (892), Expect = 7e-94, Method: Composition-based stats. Identities = 177/286 (61%), Positives = 223/286 (77%) Query: 1 MDWDNARIFLAIYRVGTLRGAAEYLEIDQATAGRRLAALESSLGARLFLRTPSGYVPTPA 60 MDWDNARIFLAIYR GTLRGAA L+IDQATAGRRLAALE+SL ARLFLRTPSGYVPT A Sbjct: 1 MDWDNARIFLAIYRNGTLRGAAALLQIDQATAGRRLAALEASLDARLFLRTPSGYVPTAA 60 Query: 61 GEMAAAAATQMEQGAEQLQRQMQGMDERLCGVVRLAATDITARHFLLPALHRLRQEHPKI 120 GE A AAA +MEQ A+QLQRQMQG+D RL GVVR+A ++ A +F++ A+ RL +HP I Sbjct: 61 GEQAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASYFIMEAISRLHVQHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTVRPDAPDLIARHLKRLHTGMYASKAYVKKRGLPDPG 180 RV LSTS Q++NLT+READ+A+R ++PD PDLI RHL R G+YAS++Y++ G P PG Sbjct: 121 RVALSTSIQLSNLTRREADLAIRNIKPDNPDLIQRHLARKEVGLYASRSYLEAHGEPRPG 180 Query: 181 TGLKGHDVVIYPRSVSPSKSEQICGESIAHANVAMEVSTGLVMYDSLQAGFGIGELPTHV 240 T GH +V Y ++V P S+ CGE + +AME+++GL++ +++ AG GIGELP H+ Sbjct: 181 TAFAGHTLVTYQQAVLPGWSDTFCGEPTGNGRIAMELNSGLMIIEAVAAGLGIGELPIHM 240 Query: 241 GDKTSGLVRIWPQRAVPYDMWLVLHSDLNRTARVRAVADAIIAAYE 286 + LVRIWP R+ PYD+WLV+H DLNRTARVRAVADAI+ +E Sbjct: 241 APQYPDLVRIWPHRSEPYDLWLVMHGDLNRTARVRAVADAIVEVFE 286