BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2658.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754378.1| acetylspermidine deacetylase [Collimonas fun... 417 e-114 ref|YP_004359612.1| Histone deacetylase family protein [Burkhold... 399 e-109 ref|YP_002910777.1| histone deacetylase family protein [Burkhold... 395 e-108 ref|ZP_03268153.1| histone deacetylase superfamily [Burkholderia... 393 e-107 ref|YP_001856991.1| histone deacetylase superfamily protein [Bur... 392 e-107 >ref|YP_004754378.1| acetylspermidine deacetylase [Collimonas fungivorans Ter331] gb|AEK63555.1| Acetylspermidine deacetylase [Collimonas fungivorans Ter331] Length = 340 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 227/316 (71%), Positives = 264/316 (83%), Gaps = 1/316 (0%) Query: 31 RARMTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDQFLDRREAPLADPAELE 90 R ++TTA YTH DC+ H+MG HPE+PARL+AIEDQLI SRIDQ LD R PLA +L Sbjct: 26 RDQVTTAFYTHPDCKLHDMGPGHPESPARLQAIEDQLIASRIDQLLDYRSPPLAQEVDLV 85 Query: 91 RVHTAAAVDYVREHSHALSLSGEHYHSVDGDTLLNKHSWRAALRAAGAAVAATDAVLAGE 150 R H+AA + VREHS AL+ Y +D DT +N HSW+AALRAAGAA+AATDAV+AGE Sbjct: 86 RAHSAAMIALVREHSLALAGKAGLY-PLDPDTSVNGHSWQAALRAAGAALAATDAVMAGE 144 Query: 151 LDNAFCAVRPPGHHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTED 210 + NAFCAVRPPGHHAT +MGFCLFNN+A+AA HA++ HGLERVA+IDFDVHHGNGTE+ Sbjct: 145 VSNAFCAVRPPGHHATSYNSMGFCLFNNIALAALHALEAHGLERVAIIDFDVHHGNGTEE 204 Query: 211 IFAHDPRVLMVSFFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHAH 270 IFA DPRVLM SFFQHPFYP G P + VN+PVPAYSDGS VR+L TE+WLPAL+AH Sbjct: 205 IFARDPRVLMASFFQHPFYPHCGTEPEGDNAVNIPVPAYSDGSIVRKLATEQWLPALNAH 264 Query: 271 QPQMIFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSA 330 +PQMIF+SAGFDAHREDDM QMGLVEADY W+TRQIM++A ++A+GRIVSCLEGGYNLSA Sbjct: 265 RPQMIFVSAGFDAHREDDMAQMGLVEADYTWLTRQIMEVAAEHAEGRIVSCLEGGYNLSA 324 Query: 331 LGRSVVAHLKVLADLE 346 LGRS VAHLKVLA+LE Sbjct: 325 LGRSAVAHLKVLAELE 340 >ref|YP_004359612.1| Histone deacetylase family protein [Burkholderia gladioli BSR3] gb|AEA59656.1| Histone deacetylase family protein [Burkholderia gladioli BSR3] Length = 307 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 208/310 (67%), Positives = 249/310 (80%), Gaps = 5/310 (1%) Query: 34 MTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDQFLDRREAPLADPAELERVH 93 M TA YTH DC HEMG+WHPE P+RL AI+DQLI SRID+ ++ AP A A L RVH Sbjct: 1 MATAFYTHPDCLLHEMGEWHPECPSRLSAIQDQLIASRIDELIEHESAPFASEAALARVH 60 Query: 94 TAAAVDYVREHSHALSLSGEHYHSVDGDTLLNKHSWRAALRAAGAAVAATDAVLAGELDN 153 T A +DY++ + A E Y +D DT +N+H+W+AALRAAGAA+AATDAVL G DN Sbjct: 61 TRAHIDYIKSNVPA-----EGYCELDPDTSMNRHTWQAALRAAGAAIAATDAVLEGRYDN 115 Query: 154 AFCAVRPPGHHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTEDIFA 213 AFC+VRPPGHHA PA+AMGFC FNNVA+AARHA+DVHGLERVAVIDFDVHHGNGTE F+ Sbjct: 116 AFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALDVHGLERVAVIDFDVHHGNGTEAAFS 175 Query: 214 HDPRVLMVSFFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHAHQPQ 273 +DPRVLM SFFQHP +PFSG +++NVPVPA + G A+R+ V WLP L A +PQ Sbjct: 176 NDPRVLMCSFFQHPLFPFSGTEHPAPNMLNVPVPARTSGMAIRETVDMLWLPRLEAFRPQ 235 Query: 274 MIFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSALGR 333 M+F+SAGFDAHREDD+G+MGLVEADY W+T QI +IA ++A+GR+VSCLEGGYNLSALGR Sbjct: 236 MLFVSAGFDAHREDDLGRMGLVEADYEWLTTQICEIARKHAQGRVVSCLEGGYNLSALGR 295 Query: 334 SVVAHLKVLA 343 SVVAHL+VLA Sbjct: 296 SVVAHLRVLA 305 >ref|YP_002910777.1| histone deacetylase family protein [Burkholderia glumae BGR1] gb|ACR28073.1| Histone deacetylase family protein [Burkholderia glumae BGR1] Length = 307 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 208/310 (67%), Positives = 249/310 (80%), Gaps = 5/310 (1%) Query: 34 MTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDQFLDRREAPLADPAELERVH 93 M TA+YTH DC HEMG+WHPE P+RL AI+DQLI SRID L+ AP A A L RVH Sbjct: 1 MATALYTHPDCLLHEMGEWHPECPSRLSAIQDQLIASRIDDLLEHESAPFASEAALARVH 60 Query: 94 TAAAVDYVREHSHALSLSGEHYHSVDGDTLLNKHSWRAALRAAGAAVAATDAVLAGELDN 153 T A +DY++ ++ E Y +D DT +N H+WRAALRAAGAA+AATDAV+ G DN Sbjct: 61 TRAHIDYLKS-----NIPAEGYFELDPDTRMNPHTWRAALRAAGAAIAATDAVIEGRYDN 115 Query: 154 AFCAVRPPGHHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTEDIFA 213 AFC+VRPPGHHA PA+AMGFC FNNVAVAARHA+DVHGLERVAVIDFDVHHGNGTE F+ Sbjct: 116 AFCSVRPPGHHAEPARAMGFCFFNNVAVAARHALDVHGLERVAVIDFDVHHGNGTEAAFS 175 Query: 214 HDPRVLMVSFFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHAHQPQ 273 +DPRVLM SFFQHP +PFSG +++NVPVPA + G AVR++V WLP L A +PQ Sbjct: 176 NDPRVLMCSFFQHPLFPFSGTDHPAPNMLNVPVPARTQGMAVREIVDLLWLPRLEAFRPQ 235 Query: 274 MIFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSALGR 333 M+F+SAGFDAHRED++G+MGLVEADY W+T QI ++A ++A+GRIVSCLEGGY+LSALGR Sbjct: 236 MLFVSAGFDAHREDELGRMGLVEADYEWLTGQICQVARRHARGRIVSCLEGGYHLSALGR 295 Query: 334 SVVAHLKVLA 343 SVVAHL+VLA Sbjct: 296 SVVAHLRVLA 305 >ref|ZP_03268153.1| histone deacetylase superfamily [Burkholderia sp. H160] gb|EEA00295.1| histone deacetylase superfamily [Burkholderia sp. H160] Length = 307 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 208/312 (66%), Positives = 245/312 (78%), Gaps = 5/312 (1%) Query: 34 MTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDQFLDRREAPLADPAELERVH 93 M T Y+H DC H+MG WHPE PARL+AIEDQLI SRID ++R APLAD A L RVH Sbjct: 1 MATGFYSHTDCLLHDMGQWHPECPARLQAIEDQLIASRIDALIERESAPLADEAALLRVH 60 Query: 94 TAAAVDYVREHSHALSLSGEHYHSVDGDTLLNKHSWRAALRAAGAAVAATDAVLAGELDN 153 T A VDY+R + E +D DT +N H+W+AALRAAGAAVAATDAV+ G DN Sbjct: 61 TQAHVDYIRGRAPV-----EGMAEIDPDTAMNPHTWQAALRAAGAAVAATDAVIDGRYDN 115 Query: 154 AFCAVRPPGHHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTEDIFA 213 AFC+VRPPGHHA PA+AMGFC FNNVA+AARHA+DVHGL RVA+IDFDVHHGNGTE F+ Sbjct: 116 AFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALDVHGLARVAIIDFDVHHGNGTEAAFS 175 Query: 214 HDPRVLMVSFFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHAHQPQ 273 DPRVLM S FQHPFYPF+G ++ NVP+PA S+G AVR+ V WLP LH +P+ Sbjct: 176 GDPRVLMCSIFQHPFYPFTGADNQAPNMCNVPMPARSNGMAVREAVDMLWLPRLHEFRPE 235 Query: 274 MIFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSALGR 333 M+FISAGFDAHREDD+G MGLVE DYAW+T Q+ +IA +YA+GRIVSCLEGGYNLSALGR Sbjct: 236 MLFISAGFDAHREDDLGNMGLVEDDYAWITGQMCEIARRYARGRIVSCLEGGYNLSALGR 295 Query: 334 SVVAHLKVLADL 345 SVVAH++ LA++ Sbjct: 296 SVVAHVRALAEI 307 >ref|YP_001856991.1| histone deacetylase superfamily protein [Burkholderia phymatum STM815] gb|ACC69945.1| histone deacetylase superfamily [Burkholderia phymatum STM815] Length = 307 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 209/312 (66%), Positives = 245/312 (78%), Gaps = 5/312 (1%) Query: 34 MTTAIYTHADCQRHEMGDWHPETPARLEAIEDQLILSRIDQFLDRREAPLADPAELERVH 93 M T Y+HADC +HEMG WHPE PARL+AIEDQLI SRI + ++R APLAD A L RVH Sbjct: 1 MATGFYSHADCLQHEMGQWHPECPARLQAIEDQLIASRIGELIERESAPLADEAALLRVH 60 Query: 94 TAAAVDYVREHSHALSLSGEHYHSVDGDTLLNKHSWRAALRAAGAAVAATDAVLAGELDN 153 T A VDY+R S SG Y +D DT +N H+W AALRAAGAAVAATDAV+ G DN Sbjct: 61 TKAHVDYLRARS---PQSG--YAEIDPDTSMNPHTWTAALRAAGAAVAATDAVIEGRYDN 115 Query: 154 AFCAVRPPGHHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTEDIFA 213 AFC+VRPPGHHA PA+AMGFC FNNVA+AARHA++VH LERVA+IDFDVHHGNGTE F+ Sbjct: 116 AFCSVRPPGHHAEPARAMGFCFFNNVAIAARHALEVHKLERVAIIDFDVHHGNGTEAAFS 175 Query: 214 HDPRVLMVSFFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHAHQPQ 273 +D RVLM S FQHPFYPF+G ++ NVP+ A S G VR+ + WLP L A +PQ Sbjct: 176 NDARVLMCSIFQHPFYPFTGADNQAPNMCNVPIAARSKGMVVREAIDMIWLPRLDAFKPQ 235 Query: 274 MIFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSALGR 333 M+F+SAGFDAHREDD+G M LVE DYAW+T+QI +AD+YAKGRIVSCLEGGYNLSALGR Sbjct: 236 MLFVSAGFDAHREDDLGNMALVEDDYAWITQQIRLVADKYAKGRIVSCLEGGYNLSALGR 295 Query: 334 SVVAHLKVLADL 345 SVVAH++ LAD+ Sbjct: 296 SVVAHVRALADI 307