BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2657.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774412.1| membrane-bound lytic peptidoglycan transglyc... 606 e-171 ref|YP_004754383.1| membrane-bound lytic murein transglycosylase... 484 e-134 ref|YP_001100807.1| membrane-bound lytic murein transglycosylase... 457 e-126 ref|YP_001354349.1| membrane-bound lytic murein transglycosylase... 452 e-125 ref|ZP_04579718.1| membrane-bound lytic Murein transglycosylase ... 376 e-102 >ref|YP_003774412.1| membrane-bound lytic peptidoglycan transglycosylase B protein [Herbaspirillum seropedicae SmR1] gb|ADJ62504.1| membrane-bound lytic peptidoglycan transglycosylase B protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 298/380 (78%), Positives = 331/380 (87%), Gaps = 14/380 (3%) Query: 37 LASTLLISTLCALPMTVQAQDGKPVDKKTQKKAVDNKDKKAAEKKAKPQ---AKKKVAAD 93 ++S LL+ LCA + A + A +K KA + K P+ AKKK + + Sbjct: 1 MSSLLLVLGLCASASALCADN-----------AAASKAGKAQQHKTGPKKVVAKKKTSPE 49 Query: 94 DQGEFVNFNEWKDVARFMDEMAERNQFQRSDLNALFARTRYVDSAIQLIKPAPSTKPKNW 153 DQGEFVNFNEWK+VARFMD+M ERN F RS+LN+LFA+TRY+DSAIQLIKPAPS KPKNW Sbjct: 50 DQGEFVNFNEWKEVARFMDDMVERNHFSRSELNSLFAQTRYLDSAIQLIKPAPSNKPKNW 109 Query: 154 AAYRARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIVGIIGVETVYGRNTGNFRV 213 AYRARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEII GIIGVETVYGRNTGNFRV Sbjct: 110 FAYRARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIAGIIGVETVYGRNTGNFRV 169 Query: 214 MDVLTTLAFDYPNTPNRDARMAFFRGELENTLLLAREAGIDPMSLRGSYAGAIGWPQFMP 273 MD ++TLAFDYPNTPNR+ARMAFFRGELENTLLLAREAGIDP++LRGSYAGAIGWPQFMP Sbjct: 170 MDAISTLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDPLTLRGSYAGAIGWPQFMP 229 Query: 274 GSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAFPVTVSNDNRQWEAM 333 GSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRG+PVAFPVTVS +NRQWE M Sbjct: 230 GSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGQPVAFPVTVSTENRQWEGM 289 Query: 334 LNQGLEAKYTVEELQAAGISTSSLPAGLRYGLVDLQNGTGPTEYWVATNNFYAITQYNRS 393 LNQGLEAKY+V+EL+AAG+ ++PA LR+GLVDLQNGT PTEYW+ T NF+AITQYNRS Sbjct: 290 LNQGLEAKYSVDELRAAGVVLPAVPADLRFGLVDLQNGTNPTEYWIGTANFFAITQYNRS 349 Query: 394 YFYAMSVADLGRAVAAARNR 413 YFYAMSVA+LGRAVAAARNR Sbjct: 350 YFYAMSVAELGRAVAAARNR 369 >ref|YP_004754383.1| membrane-bound lytic murein transglycosylase B [Collimonas fungivorans Ter331] gb|AEK63560.1| membrane-bound lytic murein transglycosylase B [Collimonas fungivorans Ter331] Length = 374 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 231/338 (68%), Positives = 274/338 (81%), Gaps = 4/338 (1%) Query: 80 KKAKPQAKKKVAADDQGEFVNFNEWKDVARFMDEMAERNQFQRSDLNALFARTRYVDSAI 139 K A + +K + D GEF NF +WK+V+ F+D+M E+N F R++L A+F + RYVD+AI Sbjct: 37 KTASAKIRKASSTADDGEFANFADWKEVSSFIDQMVEKNGFDRNELVAMFNKVRYVDTAI 96 Query: 140 QLIKPAPSTKPKNWAAYRARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIVGIIG 199 QL+KPAP++KPKNWAAYRARFVEPVRI AGVDFWNTY AL RAEAQYGVP EIIVGIIG Sbjct: 97 QLMKPAPASKPKNWAAYRARFVEPVRIQAGVDFWNTYADALGRAEAQYGVPAEIIVGIIG 156 Query: 200 VETVYGRNTGNFRVMDVLTTLAFDYPNTPNRDARMAFFRGELENTLLLAREAGIDPMSLR 259 VETVYGRN G+FRVMD +TTLAFDYPNTP R+ARM FFR ELE+TLL ARE+GIDP +L Sbjct: 157 VETVYGRNVGSFRVMDAITTLAFDYPNTPTREARMTFFRSELESTLLYARESGIDPFTLL 216 Query: 260 GSYAGAIGWPQFMPGSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAF 319 GSYAGAIGWPQFMP SIR+Y VDFDG GKIDLRNSPVDAIGSVAHYLA HGW+ G P+ F Sbjct: 217 GSYAGAIGWPQFMPSSIRQYGVDFDGKGKIDLRNSPVDAIGSVAHYLAEHGWKTGLPIVF 276 Query: 320 PVTVSNDN---RQWEAMLNQGLEAKYTVEELQAAGISTSSLPAG-LRYGLVDLQNGTGPT 375 P T+S D +W+A + QGLEA++ ++EL AAG+ +P +RYGL+DLQNG P Sbjct: 277 PATLSTDTSAENRWQAFIGQGLEARFPLDELIAAGVVPGVVPPNDIRYGLIDLQNGQNPA 336 Query: 376 EYWVATNNFYAITQYNRSYFYAMSVADLGRAVAAARNR 413 EYW+ T+NF+AITQYNRS+FYAMSV DLGRAV AR + Sbjct: 337 EYWLGTDNFFAITQYNRSFFYAMSVVDLGRAVRVARTQ 374 >ref|YP_001100807.1| membrane-bound lytic murein transglycosylase B [Herminiimonas arsenicoxydans] emb|CAL62686.1| membrane-bound lytic murein transglycosylase B [Herminiimonas arsenicoxydans] Length = 367 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 229/341 (67%), Positives = 265/341 (77%), Gaps = 6/341 (1%) Query: 77 AAEKKAKPQAKKKVAADD---QG-EFVNFNEWKDVARFMDEMAERNQFQRSDLNALFART 132 A E KPQA K QG EF NFN+W+DVA F+D MAE+N F + +L ++T Sbjct: 27 AHEGGKKPQATVKAKKVVKPVQGDEFANFNQWRDVADFIDRMAEKNGFDKKELQNTLSKT 86 Query: 133 RYVDSAIQLIKPAPSTKPKNWAAYRARFVEPVRINAGVDFWNTYGVALARAEAQYGVPME 192 YVDSAIQL+KPAP KPKNWAAYR+RFVEPVRI+AGV FWNTY AL RAE YGVP E Sbjct: 87 HYVDSAIQLMKPAPPGKPKNWAAYRSRFVEPVRIDAGVAFWNTYADALTRAEKLYGVPAE 146 Query: 193 IIVGIIGVETVYGRNTGNFRVMDVLTTLAFDYPNTPNRDARMAFFRGELENTLLLAREAG 252 IIV IIGVETVYGRNTGNFRVMD +TTLAF YP+TPNR RMA+FRGELENTLL AR+ Sbjct: 147 IIVAIIGVETVYGRNTGNFRVMDAITTLAFAYPDTPNRSTRMAYFRGELENTLLFARDEK 206 Query: 253 IDPMSLRGSYAGAIGWPQFMPGSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQ 312 IDP SL GSYAGAIGWPQFMPGSIR++AVDFDG+G IDLRNSPVDAIGSVA++L HGW+ Sbjct: 207 IDPFSLLGSYAGAIGWPQFMPGSIRKFAVDFDGNGHIDLRNSPVDAIGSVANFLVQHGWR 266 Query: 313 RGEPVAFPVTVSNDNRQWEAMLNQGLEAKYTVEELQAAGIS-TSSLPAGLRYGLVDLQNG 371 GEP FP TV + W+ + QGLEAK++V EL+AAG++ T P+ + +GLVDLQNG Sbjct: 267 TGEPAVFPATV-DMTENWQRFIGQGLEAKFSVAELKAAGVTPTIEPPSDMLFGLVDLQNG 325 Query: 372 TGPTEYWVATNNFYAITQYNRSYFYAMSVADLGRAVAAARN 412 +EYW+ NF+AITQYNRS+FYAMSV DL RAV AARN Sbjct: 326 AEASEYWLGAPNFFAITQYNRSFFYAMSVIDLSRAVRAARN 366 >ref|YP_001354349.1| membrane-bound lytic murein transglycosylase B protein [Janthinobacterium sp. Marseille] gb|ABR88258.1| membrane-bound lytic murein transglycosylase B protein [Janthinobacterium sp. Marseille] Length = 372 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 217/317 (68%), Positives = 255/317 (80%), Gaps = 2/317 (0%) Query: 97 EFVNFNEWKDVARFMDEMAERNQFQRSDLNALFARTRYVDSAIQLIKPAPSTKPKNWAAY 156 EF NF++W DV+ F+D+M E+N F + L + +T YVDSAIQL+KPAP KPKNWAAY Sbjct: 56 EFANFSQWSDVSSFIDQMVEKNGFNKQQLQSTLNQTHYVDSAIQLMKPAPPGKPKNWAAY 115 Query: 157 RARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIVGIIGVETVYGRNTGNFRVMDV 216 RARFVEPVRIN GV FWN Y ALARAEA+YGVP EIIV IIGVETVYGRNTGNFRVMD Sbjct: 116 RARFVEPVRINGGVAFWNQYADALARAEAKYGVPAEIIVAIIGVETVYGRNTGNFRVMDA 175 Query: 217 LTTLAFDYPNTPNRDARMAFFRGELENTLLLAREAGIDPMSLRGSYAGAIGWPQFMPGSI 276 +TTLAF YP+TPNR ARM +FRGELENTLL AR+ IDP SL GSYAGAIGWPQFMPGSI Sbjct: 176 ITTLAFAYPDTPNRTARMNYFRGELENTLLFARDEQIDPFSLLGSYAGAIGWPQFMPGSI 235 Query: 277 REYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAFPVTVSNDNRQWEAMLNQ 336 R++AVDFDG+G IDLRNSPVDAIGSVA++L HGW+ GEP FP V + W+ +NQ Sbjct: 236 RKFAVDFDGNGHIDLRNSPVDAIGSVANFLVQHGWRSGEPTVFPAKV-DMTENWQRFINQ 294 Query: 337 GLEAKYTVEELQAAGIST-SSLPAGLRYGLVDLQNGTGPTEYWVATNNFYAITQYNRSYF 395 GL AK+T++E++ AG++ PA + +GLVDLQNG P+EYW+ +NF+AITQYNRS+F Sbjct: 295 GLSAKFTLKEMKEAGVTPLVEPPADMLFGLVDLQNGADPSEYWLGADNFFAITQYNRSFF 354 Query: 396 YAMSVADLGRAVAAARN 412 YAMSV DL RAV AARN Sbjct: 355 YAMSVIDLSRAVRAARN 371 >ref|ZP_04579718.1| membrane-bound lytic Murein transglycosylase B [Oxalobacter formigenes OXCC13] gb|EEO30691.1| membrane-bound lytic Murein transglycosylase B [Oxalobacter formigenes OXCC13] Length = 376 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 183/302 (60%), Positives = 223/302 (73%), Gaps = 1/302 (0%) Query: 107 VARFMDEMAERNQFQRSDLNALFARTRYVDSAIQLIKPAPSTKPKNWAAYRARFVEPVRI 166 +A F+D + + ++ LN LF TR +AI+L+KP+ S K KNW AYR R +EPVR+ Sbjct: 65 LADFIDRFSTKYHVDKNRLNCLFQGTRVNHTAIRLMKPSGSGKTKNWQAYRQRMIEPVRV 124 Query: 167 NAGVDFWNTYGVALARAEAQYGVPMEIIVGIIGVETVYGRNTGNFRVMDVLTTLAFDYPN 226 NAGV FWNTY L RAE +YGVP IIVGI+G+ET+YGR+TG FR +D LTTLAF YP Sbjct: 125 NAGVRFWNTYEKYLDRAEKEYGVPAYIIVGILGIETIYGRDTGRFRTLDALTTLAFYYPE 184 Query: 227 TPNRDARMAFFRGELENTLLLAREAGIDPMSLRGSYAGAIGWPQFMPGSIREYAVDFDGD 286 TPN+ +R FFR ELE LLL+ + +DP+S+ GSYAGAIGWPQFMPGSIR YAVDFD D Sbjct: 185 TPNKASRQEFFRKELEQFLLLSSQNQVDPLSIYGSYAGAIGWPQFMPGSIRAYAVDFDKD 244 Query: 287 GKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAFPVTVSNDNRQWEAMLNQGLEAKYTVEE 346 GKIDL NS +DAIGSVA++L HGW+ G+PV FP T D E + NQGL+A Y+++E Sbjct: 245 GKIDLENSAIDAIGSVANFLKQHGWKTGKPVIFPATADVDCPLPETLFNQGLKATYSLKE 304 Query: 347 LQAAGISTSSL-PAGLRYGLVDLQNGTGPTEYWVATNNFYAITQYNRSYFYAMSVADLGR 405 L A IST L P L YGLVDL NG PTEY + T+NF+AITQYNRSYFYAMSV +LG+ Sbjct: 305 LNAQCISTDPLAPDNLLYGLVDLPNGPYPTEYRIGTDNFFAITQYNRSYFYAMSVIELGK 364 Query: 406 AV 407 V Sbjct: 365 KV 366