BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2655.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774410.1| hypothetical protein Hsero_0985 [Herbaspiril... 575 e-162 ref|YP_004752228.1| putative homoserine kinase type II, PnuC-ass... 393 e-107 ref|YP_001116548.1| aminoglycoside phosphotransferase [Burkholde... 353 3e-95 ref|ZP_06485279.1| hypothetical protein XcampvN_11639 [Xanthomon... 343 3e-92 ref|ZP_06731408.1| aminoglycoside phosphotransferase [Xanthomona... 338 1e-90 >ref|YP_003774410.1| hypothetical protein Hsero_0985 [Herbaspirillum seropedicae SmR1] gb|ADJ62502.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 333/386 (86%), Positives = 355/386 (91%) Query: 71 MDAASHHLTRVISHGMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPFSAA 130 MDAASHHLTRVISHGMG +PVISDWPALTSAEVARVLRHYP VGQPLRLEWHSPRPFSAA Sbjct: 1 MDAASHHLTRVISHGMGADPVISDWPALTSAEVARVLRHYPGVGQPLRLEWHSPRPFSAA 60 Query: 131 CVMQTESGPIIVKRHHARVRDVAALAEEHRFVAHLQARGLPVSSALATPEGATALADEYW 190 CVMQTESGPIIVKRHH RVRDVAAL EEHRF AHLQ +GLPVS ALAT GATALAD+YW Sbjct: 61 CVMQTESGPIIVKRHHVRVRDVAALGEEHRFAAHLQEKGLPVSCALATASGATALADDYW 120 Query: 191 TYEVFPLAPGVDLYREAMSWTPFTSCAHARSAGQMLARLHQASAGYDAPARPARPLVSSF 250 TYEVF LA GVDLYREA+SWTPF SCAHA SAGQML+RLHQA+AGY+APAR ARPLV+SF Sbjct: 121 TYEVFALAAGVDLYREALSWTPFHSCAHAWSAGQMLSRLHQAAAGYEAPARAARPLVASF 180 Query: 251 TIFSQEDPVRPLQHYIEQRPAIADYLENRPWRGEVAQHLLPWHAALKPYLDEFVPLWTHN 310 TIFSQ+DPV PLQ YI QRPAIADYLE RPWRGEVAQHLLPWHAALKPYLDEFVPLWTHN Sbjct: 181 TIFSQQDPVDPLQAYIAQRPAIADYLEARPWRGEVAQHLLPWHAALKPYLDEFVPLWTHN 240 Query: 311 DWHASNLLWSDATPEAQVQTVLDFGLCDRTCALHDLATAIERNIVEWLAIPQRAVQLVHL 370 DWHASNLLWSDA+P+AQVQTVLDFGLCDRT ALHDLATAIERNIVEWLAIPQR QLVHL Sbjct: 241 DWHASNLLWSDASPQAQVQTVLDFGLCDRTTALHDLATAIERNIVEWLAIPQRDEQLVHL 300 Query: 371 DLLDAMLDGYAATVPLTARQMRALAALLPLVHAEFALAELAYFHGITRSANNAALAYDAY 430 DLLDA+LDGYAA PL+ARQ+RALAALLPLVHAEFALAEL YFHG+T+SA NA+LAYDAY Sbjct: 301 DLLDALLDGYAAQSPLSARQLRALAALLPLVHAEFALAELDYFHGVTQSAINASLAYDAY 360 Query: 431 YLGHAAWFNSTAGRALLARITARAEA 456 +LGHAAWF+S G+ LLA + RA+A Sbjct: 361 FLGHAAWFHSAEGQRLLAHLHQRADA 386 >ref|YP_004752228.1| putative homoserine kinase type II, PnuC-associated, THI-regulated branch [Collimonas fungivorans Ter331] gb|AEK61405.1| Putative homoserine kinase type II, PnuC-associated, THI-regulated branch [Collimonas fungivorans Ter331] Length = 403 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 229/395 (57%), Positives = 272/395 (68%), Gaps = 9/395 (2%) Query: 68 EDDMDAASHHLTRVISHGMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPF 127 E DAA+ + T V+SHGMG + V S WPALT EVAR+LRHYP G RL WHSPRPF Sbjct: 3 EPRQDAAADNGT-VLSHGMGFDVVASSWPALTLDEVARLLRHYPQAGAVTRLGWHSPRPF 61 Query: 128 SAACVMQTESGPIIVKRHHARVRDVAALAEEHRFVAHLQARGLPVSSALATPEGATALAD 187 S+ACV T SGP+ +KR +R V L +EHRF+AHL+ RGL VS L +G+TA AD Sbjct: 62 SSACVADTGSGPLFIKRLLREIRTVDELTDEHRFMAHLRQRGLAVSEVLQAGDGSTAHAD 121 Query: 188 EYWTYEVFPLAPGVDLYREAMSWTPFTSCAHARSAGQMLARLHQASAGYDAPARPARPLV 247 WTYEV + GVD YR+A SWTPF S A +AG LA+LH A+ GYDAPAR + L Sbjct: 122 GGWTYEVQRVGQGVDRYRDATSWTPFVSTEDAAAAGSALAKLHLAARGYDAPARSTKLLA 181 Query: 248 SSFTIFSQEDPVRPLQ---HYIEQRPAIADYLENRPWRGEVAQHLLPWHAALKPYLDEFV 304 S FT+F+ EDP L+ YI+QRPA+ADYL R WR +V Q LLP+HA L P L Sbjct: 182 SGFTLFNTEDPQHVLERIGRYIQQRPALADYLAQRDWRQQVTQVLLPFHARLGPLLGGLA 241 Query: 305 PLWTHNDWHASNLLWSDATPEAQVQTVLDFGLCDRTCALHDLATAIERNIVEWLAIPQR- 363 PLWTHNDWHASNLLW P A V TV+DFGL DRTCA++DLA AIERN++EWL +P Sbjct: 242 PLWTHNDWHASNLLWQAQEPPA-VATVVDFGLADRTCAIYDLAIAIERNMIEWLVLPSTP 300 Query: 364 -AVQ--LVHLDLLDAMLDGYAATVPLTARQMRALAALLPLVHAEFALAELAYFHGITRSA 420 A Q LVH+ LDAMLD Y A PL+ + AL ALLPL H EFAL+ELAYFHG+ +SA Sbjct: 301 PAAQRPLVHIGQLDAMLDAYEAVRPLSVLEAAALPALLPLAHVEFALSELAYFHGVQKSA 360 Query: 421 NNAALAYDAYYLGHAAWFNSTAGRALLARITARAE 455 N+ALAYD Y+LGHA WF S AGR LL + R + Sbjct: 361 ENSALAYDTYFLGHAEWFGSDAGRYLLDHLQRRCD 395 >ref|YP_001116548.1| aminoglycoside phosphotransferase [Burkholderia vietnamiensis G4] gb|ABO57083.1| aminoglycoside phosphotransferase [Burkholderia vietnamiensis G4] Length = 397 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 200/373 (53%), Positives = 245/373 (65%), Gaps = 3/373 (0%) Query: 85 GMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPFSAACVMQT-ESGPIIVK 143 G+ E DWP +T EVA VL G P RL WHSPRPFSAA ++ T + VK Sbjct: 27 GVDGEQAERDWPLMTLDEVAGVLARIDGAGAPARLAWHSPRPFSAAVLVHTTRERALFVK 86 Query: 144 RHHARVRDVAALAEEHRFVAHLQARGLPVSSALATPEGATALADEYWTYEVFPLAPGVDL 203 RHHA +RDVAALAEEHRF+AHL+A G+PV+ LA +GA+A A WTYEV LAPGVD Sbjct: 87 RHHASLRDVAALAEEHRFIAHLRAHGVPVADVLAARDGASAFASGEWTYEVHALAPGVDA 146 Query: 204 YREAMSWTPFTSCAHARSAGQMLARLHQASAGYDAPARPARPLVSSFTIFSQEDPVRPLQ 263 YR MSW PF +HA +AG+ LA LH+ASAGYDAPARP R L+SSF + S D L Sbjct: 147 YRGVMSWKPFAHPSHAYAAGRALAELHRASAGYDAPARPVRTLLSSFRVLSCADLTGALA 206 Query: 264 HYIEQRPAIADYLENRPWRGEVAQHLLPWHAALKPYLDEFVPLWTHNDWHASNLLWSDAT 323 +++ +P + L R WRG+VA+ + P+HA L P L PLWTH DWHASNLLW+DA Sbjct: 207 RWVDAQPLLTRALGTRDWRGDVAKWIGPYHARLVPLLGALPPLWTHGDWHASNLLWTDAA 266 Query: 324 PEAQVQTVLDFGLCDRTCALHDLATAIERNIVEWLAIPQRAVQLVHLDLLDAMLDGYAAT 383 P AQV+TVLDFGL DRTCA+ DLA AIERN ++WLA A + V D + A+LDGY + Sbjct: 267 PGAQVRTVLDFGLADRTCAVMDLALAIERNAIDWLA--PAAARRVEYDQIGALLDGYESI 324 Query: 384 VPLTARQMRALAALLPLVHAEFALAELAYFHGITRSANNAALAYDAYYLGHAAWFNSTAG 443 PL+ AL A+LP+VH EFAL+E+AYF I + +AYD Y +GHA WF G Sbjct: 325 APLSDDAYAALVAMLPIVHTEFALSEVAYFGCIVAAPEIVDVAYDGYLIGHAQWFGERDG 384 Query: 444 RALLARITARAEA 456 R LL + R A Sbjct: 385 RKLLDWLVERRGA 397 >ref|ZP_06485279.1| hypothetical protein XcampvN_11639 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 385 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 199/374 (53%), Positives = 251/374 (67%), Gaps = 3/374 (0%) Query: 84 HGMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPFSAACVMQTESGPIIVK 143 HGM +E + DWP LT+ E+ RVL+ +P +G+ + WHS RPFSAA ++T SGP+IVK Sbjct: 8 HGMSLELALPDWPVLTTDEIHRVLQEFPALGRLTEVRWHSARPFSAAACVETASGPVIVK 67 Query: 144 RHHARVRDVAALAEEHRFVAHLQARGLPVSSALATPEGATALADEYWTYEVFPLAPGVDL 203 RHH VR VAAL EEH F+AHL+ G PV L +G TALA + W YEV + G DL Sbjct: 68 RHHRSVRSVAALREEHSFIAHLRWAGAPVVEVLHDAQGRTALAYDDWVYEVQRVGAGRDL 127 Query: 204 YREAMSWTPFTSCAHARSAGQMLARLHQASAGYDAPARPARPLVSSFTIFSQEDPVRPLQ 263 YR+A+SWTPFT AHAR+AG LA+LH A+ G+DAPAR LV++ +F+Q DP++ L Sbjct: 128 YRDALSWTPFTDLAHARAAGAALAQLHNAAQGFDAPARSTSVLVANLRLFAQADPLQALH 187 Query: 264 HYIEQRPAIADYLENRPWRGEVAQHLLPWHAALKPYLD---EFVPLWTHNDWHASNLLWS 320 + RP +A L++RPW+ ++A HLLPWHA P L PLWTH DWHASNLLW Sbjct: 188 DALPTRPHLAAALQHRPWQHDIATHLLPWHARAWPLLSAPGALPPLWTHGDWHASNLLWD 247 Query: 321 DATPEAQVQTVLDFGLCDRTCALHDLATAIERNIVEWLAIPQRAVQLVHLDLLDAMLDGY 380 +V T+ DFGL D + AL DLATAIERN++ WL + A L LDA+LDGY Sbjct: 248 TVDGHTRVSTIFDFGLTDCSSALFDLATAIERNLIPWLRLDTDARAQAELAQLDALLDGY 307 Query: 381 AATVPLTARQMRALAALLPLVHAEFALAELAYFHGITRSANNAALAYDAYYLGHAAWFNS 440 A PL A Q+R LAALLP+VHA+FAL+E+ YF G+TRS NA +AY Y LGHA WF S Sbjct: 308 AQHRPLDANQLRRLAALLPIVHADFALSEIEYFAGVTRSFANADIAYHRYLLGHADWFAS 367 Query: 441 TAGRALLARITARA 454 G+ LL + ARA Sbjct: 368 ADGQQLLEHLHARA 381 >ref|ZP_06731408.1| aminoglycoside phosphotransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF47463.1| aminoglycoside phosphotransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 385 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 199/374 (53%), Positives = 246/374 (65%), Gaps = 3/374 (0%) Query: 84 HGMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPFSAACVMQTESGPIIVK 143 HGM +E + DWP LT+ E+ RVL+ + VG + WHS RPFSAA + T SGP+IVK Sbjct: 8 HGMSLELALPDWPVLTTDEIHRVLQRFAAVGHLTAVRWHSARPFSAAACVDTASGPVIVK 67 Query: 144 RHHARVRDVAALAEEHRFVAHLQARGLPVSSALATPEGATALADEYWTYEVFPLAPGVDL 203 RHH VR VAAL EEH F+AHL+ G PV L +G TALA W YEV + G DL Sbjct: 68 RHHRSVRSVAALREEHSFMAHLRWAGAPVVEVLHDAQGRTALALADWVYEVQRVGAGRDL 127 Query: 204 YREAMSWTPFTSCAHARSAGQMLARLHQASAGYDAPARPARPLVSSFTIFSQEDPVRPLQ 263 YR+A+SWTPFT AHAR+AG LA+LH+A+ G+DAPAR LV++ +F+Q DPV+ L Sbjct: 128 YRDALSWTPFTDVAHARAAGAALAQLHRAAQGFDAPARSTSMLVANLRLFAQADPVQALH 187 Query: 264 HYIEQRPAIADYLENRPWRGEVAQHLLPWHAALKPYLD---EFVPLWTHNDWHASNLLWS 320 + RP +A L++RPW+ ++A HLLPWHA P L PLWTH DWHASNLLW Sbjct: 188 DALPTRPHLAAALQDRPWQHDLATHLLPWHAQAWPLLSAPGALPPLWTHGDWHASNLLWD 247 Query: 321 DATPEAQVQTVLDFGLCDRTCALHDLATAIERNIVEWLAIPQRAVQLVHLDLLDAMLDGY 380 +V + DFGL D + AL DLATAIERN++ WL + A LD LDA+L+GY Sbjct: 248 TNDGATRVSAIFDFGLSDCSSALFDLATAIERNLIPWLRLDTGARAQAELDQLDALLEGY 307 Query: 381 AATVPLTARQMRALAALLPLVHAEFALAELAYFHGITRSANNAALAYDAYYLGHAAWFNS 440 A PL A +R LAALLP+VHA+FAL+E+ YF GITRS N +AY Y LGHA WF S Sbjct: 308 AQHRPLDANHLRRLAALLPIVHADFALSEIEYFAGITRSPANVDIAYHRYLLGHADWFAS 367 Query: 441 TAGRALLARITARA 454 GR LL + ARA Sbjct: 368 ADGRHLLQHLHARA 381