BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2650.p (550 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774405.1| acyl-CoA dehydrogenase [Herbaspirillum serop... 973 0.0 ref|YP_004753463.1| acyl-CoA dehydrogenase [Collimonas fungivora... 750 0.0 ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotei... 734 0.0 ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp... 711 0.0 ref|YP_001897375.1| acyl-CoA dehydrogenase domain-containing pro... 687 0.0 >ref|YP_003774405.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62497.1| acyl-CoA dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 550 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 501/550 (91%), Positives = 520/550 (94%) Query: 1 MHTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGGAEMREMAELA 60 MHTH+ITNQVPDL YNLYRSD AL+EAVQREGAHWHDCTLASQGELLGGAEMREMAELA Sbjct: 1 MHTHEITNQVPDLSGYNLYRSDAALAEAVQREGAHWHDCTLASQGELLGGAEMREMAELA 60 Query: 61 NRHAPVLHTHDRCGRRIDVVEFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFL 120 NRH PVLHTHDRCGRRIDVVEFHPAWHTLL+QLRRAGLHALPWMQPGDGAHAARAAGYFL Sbjct: 61 NRHTPVLHTHDRCGRRIDVVEFHPAWHTLLDQLRRAGLHALPWMQPGDGAHAARAAGYFL 120 Query: 121 HAQIEAGSLCPTTMTFAAIPVLQQEPALFEQLRSRLFSREHDGRDLPITQKRSILIGMGM 180 HAQIEAGSLCPTTMTFAAI VLQQEPALFEQLR+RLFSREHD RDLPI QKRSILIGMGM Sbjct: 121 HAQIEAGSLCPTTMTFAAIAVLQQEPALFEQLRTRLFSREHDARDLPIPQKRSILIGMGM 180 Query: 181 TEKQGGSDVRSNASIAMPADPLEDGRGKAYLLSGHKWFFSAPMCDAHLMLARTENGLSCF 240 TEKQGGSDVRSNASIAMP DPL DGRG AYLLSGHKWFFSAPMCDAHLMLARTENGLSCF Sbjct: 181 TEKQGGSDVRSNASIAMPVDPLNDGRGAAYLLSGHKWFFSAPMCDAHLMLARTENGLSCF 240 Query: 241 FVPRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGEDGRGIPTIIEMANHT 300 FVPRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVG++GRGIPTIIEMANHT Sbjct: 241 FVPRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGDEGRGIPTIIEMANHT 300 Query: 301 RLDCIIGSAALMRQALVQALHHARHRSAFGRRLAEQPIMRAVLADLALESEAATLLMLRV 360 RLDCIIGSAALMRQALVQA+HHARHRSAFGRRLAEQP+MRAVLADLALESEAAT+LMLRV Sbjct: 301 RLDCIIGSAALMRQALVQAIHHARHRSAFGRRLAEQPLMRAVLADLALESEAATMLMLRV 360 Query: 361 AHAFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREA 420 AHAFDAPDDPLQRAWKRI+TPAAKFWICKR LEFTGECMEVWGGNGYVET PMARLYREA Sbjct: 361 AHAFDAPDDPLQRAWKRIITPAAKFWICKRTLEFTGECMEVWGGNGYVETAPMARLYREA 420 Query: 421 PVNSIWEGSGNVMCLDVLRAISRETEGFAQLLIALDDAASTHPALAQRVRSLKQMLSAAE 480 PVNSIWEGSGNVMCLDVLRA++RET+G A LL+ LDDAA+ HPAL Q+V +LKQML+A E Sbjct: 421 PVNSIWEGSGNVMCLDVLRAMARETQGLALLLLELDDAAAGHPALRQQVDALKQMLAAPE 480 Query: 481 EEREACARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLGGTSLAAQE 540 EEREA ARRLVQQLVLALQ MLMLRHAP SA+AFL SR DGGRVYGTLG SLAAQE Sbjct: 481 EEREAGARRLVQQLVLALQGMLMLRHAPAGSAQAFLESRSQADGGRVYGTLGSASLAAQE 540 Query: 541 AILQRAWPAA 550 AILQRAWP A Sbjct: 541 AILQRAWPEA 550 >ref|YP_004753463.1| acyl-CoA dehydrogenase [Collimonas fungivorans Ter331] gb|AEK62640.1| Acyl-CoA dehydrogenase [Collimonas fungivorans Ter331] Length = 548 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 382/546 (69%), Positives = 434/546 (79%), Gaps = 3/546 (0%) Query: 2 HTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGGAEMREMAELAN 61 TH++TNQVP+L NLY D L VQR W LA G LG E ++AELAN Sbjct: 4 QTHEVTNQVPELYGNNLYLDDTILQAGVQRLHGQWRAEQLARYGAELGSKESWQLAELAN 63 Query: 62 RHAPVLHTHDRCGRRIDVVEFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLH 121 RH P L+T DR G RID VEFHPAWH LL LRR GLHALPW++P G+H ARAAGYFLH Sbjct: 64 RHQPELNTFDRLGNRIDAVEFHPAWHALLGMLRRQGLHALPWIKPQSGSHVARAAGYFLH 123 Query: 122 AQIEAGSLCPTTMTFAAIPVLQQEPALFEQLRSRLFSREHDGRDLPITQKRSILIGMGMT 181 AQ+EAGSLCPTTMTFA+IPVLQQEPALF L+++L S EHD RDL + K SIL+GMGMT Sbjct: 124 AQLEAGSLCPTTMTFASIPVLQQEPALFAALQAKLLSCEHDSRDLALEHKNSILLGMGMT 183 Query: 182 EKQGGSDVRSNASIAMPADPLEDGRGKAYLLSGHKWFFSAPMCDAHLMLARTENGLSCFF 241 EKQGGSDVRSN + A+P + GRG YLL+GHKWFFSAPMCDAH++LARTE GLSCFF Sbjct: 184 EKQGGSDVRSNTTTAVPLE-GGGGRGAGYLLTGHKWFFSAPMCDAHMVLARTEMGLSCFF 242 Query: 242 VPRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGEDGRGIPTIIEMANHTR 301 VPRW PDG++N + IQRLKDKLGNRSNSSSEVEF EA GIMVG++GRGIPTIIEMANHTR Sbjct: 243 VPRWRPDGSKNQVQIQRLKDKLGNRSNSSSEVEFREAFGIMVGDEGRGIPTIIEMANHTR 302 Query: 302 LDCIIGSAALMRQALVQALHHARHRSAFGRRLAEQPIMRAVLADLALESEAATLLMLRVA 361 LDC+IGSA L+RQALVQALHHARHRSAFGR LAEQP+M+ VL+DLALESEAATLLML++A Sbjct: 303 LDCVIGSAGLIRQALVQALHHARHRSAFGRHLAEQPLMQNVLSDLALESEAATLLMLQLA 362 Query: 362 HAFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAP 421 AF+ PDDPLQRAW+RIVTPAAKFW+CKRALEF+GECME+WGGNGYVETGPMAR YREAP Sbjct: 363 SAFEHPDDPLQRAWRRIVTPAAKFWVCKRALEFSGECMEIWGGNGYVETGPMARFYREAP 422 Query: 422 VNSIWEGSGNVMCLDVLRAISRETEGFAQLLIALDDAASTHPALAQRVRSLKQMLSAAEE 481 VNSIWEGSGNVMCLDVLRAI RE GF LL L + A HP L + L++ L+ E Sbjct: 423 VNSIWEGSGNVMCLDVLRAIEREPAGFGLLLAQLAETARDHPGLRAMLDDLQKDLATPAE 482 Query: 482 EREACARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLGGTSLAAQEA 541 +RE RR VQ+LVL +Q LML+HAP A+AF+ASR + GGRVYGTL L Q+ Sbjct: 483 QREMLGRRFVQRLVLTVQGALMLQHAPSVIADAFIASRSEAMGGRVYGTLAAAHL--QQQ 540 Query: 542 ILQRAW 547 ILQR W Sbjct: 541 ILQRTW 546 >ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] emb|CAL61224.1| isovaleryl CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 551 Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 376/550 (68%), Positives = 434/550 (78%), Gaps = 8/550 (1%) Query: 3 THDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGGAEMREMAELANR 62 TH+++NQ PDL DYNLY SDLAL+ VQRE A WH+ L G LG + ++ +LAN Sbjct: 5 THEVSNQAPDLHDYNLYTSDLALAAGVQREQAGWHEQDLIRYGAELGMQQTLQLGQLANH 64 Query: 63 HAPVLHTHDRCGRRIDVVEFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLHA 122 H P LHTHDR G RID VEFHP+WH LL RR LHA+PW Q G H AR A Y+L A Sbjct: 65 HLPELHTHDRFGHRIDTVEFHPSWHQLLAMQRRENLHAMPWSQARAGVHVARTAAYYLQA 124 Query: 123 QIEAGSLCPTTMTFAAIPVLQQEPALFEQLRSRLFSREHDGRDLPITQKRSILIGMGMTE 182 Q+E+GSLCPTTMTFAAIP+LQQEPALF L+++LF+REHD RDLP QK S+LIGMGMTE Sbjct: 125 QVESGSLCPTTMTFAAIPLLQQEPALFAALQAKLFAREHDPRDLPWAQKHSMLIGMGMTE 184 Query: 183 KQGGSDVRSNASIAMPADPLEDGRGKAYLLSGHKWFFSAPMCDAHLMLARTENGLSCFFV 242 KQGGSDVRSN ++A GRG Y L+GHKWFFSAPMCDAHL+LARTENGLSCFFV Sbjct: 185 KQGGSDVRSNTTVARAVH--GSGRGADYALTGHKWFFSAPMCDAHLVLARTENGLSCFFV 242 Query: 243 PRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGEDGRGIPTIIEMANHTRL 302 PRW PDG+RN +LIQ+LKDKLGNRSNSSSEVEF++A G+MVGE+GRGIPTIIEMANHTRL Sbjct: 243 PRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEFQDAYGVMVGEEGRGIPTIIEMANHTRL 302 Query: 303 DCIIGSAALMRQALVQALHHARHRSAFGRRLAEQPIMRAVLADLALESEAATLLMLRV-- 360 DC+IGSA LMR ALVQA+HHARHRSAFG LAEQP+MR VL+DLALESEAATLLMLR+ Sbjct: 303 DCVIGSAGLMRNALVQAIHHARHRSAFGHPLAEQPLMRNVLSDLALESEAATLLMLRLAR 362 Query: 361 --AHAFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYR 418 + DAPDD L+RAW+RI+TPAAKFW+CKR LEF+GECMEVWGGNGY+E PMAR++R Sbjct: 363 AADASRDAPDDLLERAWRRILTPAAKFWVCKRVLEFSGECMEVWGGNGYIENAPMARMFR 422 Query: 419 EAPVNSIWEGSGNVMCLDVLRAISRETEGFAQLLIALDDAASTHPALAQRVRSLKQMLSA 478 EAPVNSIWEGSGNVMCLDVLRAI RE EGFA LL L D+A TH L + SL L+ Sbjct: 423 EAPVNSIWEGSGNVMCLDVLRAIEREAEGFALLLQNLQDSAGTHAGLRALIASLHNDLAL 482 Query: 479 AEEEREACARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLGGTSLAA 538 +++E ARR Q+LVLA Q LML+HAP AEAF+ASR D + GRV+GTL T+L Sbjct: 483 PPQQQEMQARRFAQRLVLAAQASLMLQHAPASVAEAFIASRIDAECGRVFGTLPATAL-- 540 Query: 539 QEAILQRAWP 548 Q +L RAWP Sbjct: 541 QYDMLARAWP 550 >ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] gb|ABR89320.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 364/546 (66%), Positives = 427/546 (78%), Gaps = 4/546 (0%) Query: 3 THDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGGAEMREMAELANR 62 TH+++NQVP+L DYNL+ D L A++ A W+ LA+ G LG E ++ +LAN+ Sbjct: 5 THEVSNQVPELLDYNLFSCDSVLVTAIKNSAASWYAPELAALGAALGTRETLQLGQLANQ 64 Query: 63 HAPVLHTHDRCGRRIDVVEFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLHA 122 H P L THDR G RID V+FHP+WH LL RRA LHALPW QP GAH AR A Y+L A Sbjct: 65 HLPELQTHDRFGNRIDRVDFHPSWHQLLAMQRRASLHALPWSQPRAGAHIARTAAYYLQA 124 Query: 123 QIEAGSLCPTTMTFAAIPVLQQEPALFEQLRSRLFSREHDGRDLPITQKRSILIGMGMTE 182 Q+E+GSLCP TMTFAAIP+LQQEPALF L+ +LFS HD RDLP+ K S+L+GMGMTE Sbjct: 125 QVESGSLCPVTMTFAAIPLLQQEPALFATLKDKLFSTGHDERDLPLPDKASMLVGMGMTE 184 Query: 183 KQGGSDVRSNASIAMPADPLEDGRGKAYLLSGHKWFFSAPMCDAHLMLARTENGLSCFFV 242 KQGGSDVRSN ++A P + GRG+ Y L+GHKWFFSAPMCDAHL+LARTE GLSCFFV Sbjct: 185 KQGGSDVRSNTTVARPLE--SAGRGQPYALTGHKWFFSAPMCDAHLVLARTEAGLSCFFV 242 Query: 243 PRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGEDGRGIPTIIEMANHTRL 302 PRW PDG++N ILIQRLKDKLGNRSNSSSEVEF++A G+MVGEDGRGIPTIIEMANHTRL Sbjct: 243 PRWRPDGSKNAILIQRLKDKLGNRSNSSSEVEFQDAYGVMVGEDGRGIPTIIEMANHTRL 302 Query: 303 DCIIGSAALMRQALVQALHHARHRSAFGRRLAEQPIMRAVLADLALESEAATLLMLRVAH 362 DC+IGS LMR ALVQA+HHARHR AFG LAEQ +M+ VLADLALESEAAT LMLR+A Sbjct: 303 DCVIGSTGLMRNALVQAIHHARHRHAFGLPLAEQALMQNVLADLALESEAATRLMLRLAQ 362 Query: 363 AFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPV 422 A +A DDP++RAW+R+VTPAAKFWICKRALEFTGECMEVWGGNGYVE PMAR+YREAPV Sbjct: 363 AAEAIDDPVERAWRRVVTPAAKFWICKRALEFTGECMEVWGGNGYVENAPMARMYREAPV 422 Query: 423 NSIWEGSGNVMCLDVLRAISRETEGFAQLLIALDDAASTHPALAQRVRSLKQMLSAAEEE 482 NSIWEGSGNVMCLDVLRAI++E + F LL AL D A L + + L+ L+ + Sbjct: 423 NSIWEGSGNVMCLDVLRAIAKEADAFKLLLDALLDIAKEDKGLRELIAELRTDLALPATQ 482 Query: 483 REACARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLGGTSLAAQEAI 542 +E ARR Q+LVL Q LML+ AP A+AF++SR D + GRVYGTL LAA+E I Sbjct: 483 QEMQARRFTQRLVLVAQSCLMLQAAPANIADAFISSRLDAESGRVYGTLAA-PLAAKE-I 540 Query: 543 LQRAWP 548 L+RAWP Sbjct: 541 LERAWP 546 >ref|YP_001897375.1| acyl-CoA dehydrogenase domain-containing protein [Burkholderia phytofirmans PsJN] gb|ACD18151.1| acyl-CoA dehydrogenase domain protein [Burkholderia phytofirmans PsJN] Length = 561 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 363/557 (65%), Positives = 421/557 (75%), Gaps = 14/557 (2%) Query: 2 HTHDITNQVPDLCDYNLYRSDLALSEAVQREGAHWHDCTLASQGELLGGAEMREMAELAN 61 TH++TNQVP L DYNL+ SD ALS A++R+GA WH L G L E +AELAN Sbjct: 8 QTHEVTNQVPPLADYNLFSSDAALSAALERDGAGWHRGALVRHGAALTTPETLALAELAN 67 Query: 62 RHAPVLHTHDRCGRRIDVVEFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLH 121 RH P L TH G RID +EFHP+WH LL LRR GLHALP+ P GA AR AGYFLH Sbjct: 68 RHEPELVTHSPRGERIDALEFHPSWHALLSLLRREGLHALPFSDPQRGAMVARCAGYFLH 127 Query: 122 AQIEAGSLCPTTMTFAAIPVLQQEPALFEQLRSRLFSREHDGRDLPITQKRSILIGMGMT 181 AQIE+GSLCP TMTFA+IPVLQ+EPALF LR +L++REHD RDLP+ QK S +IGMGMT Sbjct: 128 AQIESGSLCPLTMTFASIPVLQREPALFATLRDKLYAREHDSRDLPLKQKTSAMIGMGMT 187 Query: 182 EKQGGSDVRSNASIAMPADPLEDGRGKAYLLSGHKWFFSAPMCDAHLMLARTE--NGLSC 239 EKQGGSDVRSN + A GRG AY L GHKWFFSAP CDAHL+L RT+ GLSC Sbjct: 188 EKQGGSDVRSNQTRAYST--AGSGRGAAYRLVGHKWFFSAPQCDAHLVLGRTDEHEGLSC 245 Query: 240 FFVPRWLPDGTRNPILIQRLKDKLGNRSNSSSEVEFEEAMGIMVGEDGRGIPTIIEMANH 299 F+VPR+ PDG +N + IQRLKDKLGNRSN+SSEVEF +A GIM+G++GRG+PTIIEMAN+ Sbjct: 246 FYVPRFAPDGRKNNVQIQRLKDKLGNRSNASSEVEFLDAFGIMIGDEGRGVPTIIEMANY 305 Query: 300 TRLDCIIGSAALMRQALVQALHHARHRSAFGRRLAEQPIMRAVLADLALESEAATLLMLR 359 TRLDC+IGSAALMR ALVQA+HHARHRSAFGR LA+QP+MR VLADLALESEAAT+L +R Sbjct: 306 TRLDCVIGSAALMRAALVQAIHHARHRSAFGRHLADQPLMRNVLADLALESEAATVLFMR 365 Query: 360 VAHAFDAPDDP-----LQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMA 414 +A AF+ D +RAW+RIVTPAAK+W+CKRALEFTGE MEVWGGNGYVETGPMA Sbjct: 366 LARAFEESTDAASTSLAERAWRRIVTPAAKYWVCKRALEFTGEAMEVWGGNGYVETGPMA 425 Query: 415 RLYREAPVNSIWEGSGNVMCLDVLRAISRETEGFAQLLIALDDAASTHPALAQRVRSLKQ 474 R YREAPVNSIWEGSGNVMCLDVLRA+ RE E L A A HPAL+ + L Sbjct: 426 RFYREAPVNSIWEGSGNVMCLDVLRAMEREPEAAQALFAAWHADAQAHPALSAALGKLAA 485 Query: 475 MLSAAEEEREACARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDR---DGGRVYGTL 531 L+ E REA ARR+ QQ+VL Q L+L+HAP E AEAF+A+R + GRVYGTL Sbjct: 486 TLNGPAEHREASARRIAQQVVLIAQATLLLKHAPAEVAEAFVATRLAEGCGESGRVYGTL 545 Query: 532 GGTSLAAQEAILQRAWP 548 T A AI++RA+P Sbjct: 546 PATFDHA--AIIERAFP 560