BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2649.p (609 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774404.1| hypothetical protein Hsero_0979 [Herbaspiril... 605 e-171 ref|ZP_03832855.1| hypothetical protein PcarcW_16433 [Pectobacte... 86 2e-14 ref|YP_003006264.1| hypothetical protein Dd1591_3985 [Dickeya ze... 86 3e-14 ref|YP_003331728.1| hypothetical protein Dd586_0125 [Dickeya dad... 84 6e-14 ref|YP_002989603.1| hypothetical protein Dd703_4029 [Dickeya dad... 84 6e-14 >ref|YP_003774404.1| hypothetical protein Hsero_0979 [Herbaspirillum seropedicae SmR1] gb|ADJ62496.1| hypothetical protein Hsero_0979 [Herbaspirillum seropedicae SmR1] Length = 613 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 426/622 (68%), Positives = 485/622 (77%), Gaps = 22/622 (3%) Query: 1 MAMETDLAITARDALTQLASQYPPRGDSASPPISAPRPAVEQALPEEGVTLSLSAQGKLM 60 MAMETDLAI AR+A+TQL +Q PR DSA+ A A PEEGVTLSLSAQGKL+ Sbjct: 1 MAMETDLAIMAREAITQLTAQPHPRDDSAAQQGPAAPAATAIPAPEEGVTLSLSAQGKLL 60 Query: 61 AALASAVDNVTTAAVGSTEAVQVLLETVG-GAARPITRNTLFAIEAQLVAARRGADAIAF 119 AALA+AVD+VT A+ G+ A L P+TR LFA+EAQLVAAR A+AI Sbjct: 61 AALATAVDSVTAASAGAQPAASAALAARSADPTLPVTRKLLFALEAQLVAARGSAEAIQL 120 Query: 120 ADAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDESGAYTTNERYAAA 179 ADA+LPPS++ QRL +ARQAT+SLYGRAANPF GL RAELSAIVYD+SGAYT NERYAAA Sbjct: 121 ADAELPPSQEPQRLARARQATESLYGRAANPFAGLGRAELSAIVYDDSGAYTINERYAAA 180 Query: 180 NQRTALDQKYWAPVFQRALESGDWKPVITAALVFYASLSALEQTAYPDNYAQLLQQYLDL 239 NQRT LDQ++WAPVFQRALESG+W+PVITAALVFY SLSALE+TAYPDNY QLLQQYLDL Sbjct: 181 NQRTELDQRFWAPVFQRALESGNWQPVITAALVFYVSLSALERTAYPDNYPQLLQQYLDL 240 Query: 240 YQLQSPSSPNALPPQQQADLARMLETLVLPLGPLALAGGVIRGLMLPRLGPSLAELIAAA 299 Y+LQ + LP QQADLARMLETLVLP GPLALAGG I+GL+LPRLGPSLAE++AAA Sbjct: 241 YRLQPQA---VLPAPQQADLARMLETLVLPGGPLALAGGAIQGLLLPRLGPSLAEILAAA 297 Query: 300 PRLADLVQVNNIAHNVQDSAYLVLLQRVFGLSRREEEPAPLRRA-----GAGALN----- 349 PRLADLVQVNN+AH+VQDS+YL+LLQRVFG+ RRE+EPAP RR G+G N Sbjct: 298 PRLADLVQVNNLAHSVQDSSYLLLLQRVFGVQRREDEPAPARRTSVPGNGSGVGNMAALA 357 Query: 350 -RDFLAYDDRRLLAEAYAYAQTHEMALEEADALARDLAAYRRARAGAANTRGAAAAAGKD 408 RDFL+Y DRR LA AYAYAQ +A EE DALA+DLA YR+ RAGA + AA AA Sbjct: 358 ARDFLSYGDRRYLAAAYAYAQQQGIAPEEVDALAQDLARYRQERAGAGASADAADAARA- 416 Query: 409 VPGNGLAQTARMSNADAVIAQRLLSSRAASMTQLDHGFLAWLLDPAGGGWRDGELSGHQV 468 LA T RMS+ D +IAQRLLSS+AA TQLDH FLAWLLDPAGGGWRDG SGH V Sbjct: 417 -----LAHTTRMSSEDRLIAQRLLSSQAARQTQLDHAFLAWLLDPAGGGWRDGLASGHSV 471 Query: 469 SFSALEKLLAGLAGVGIGEPAGEGRGLEASYRMALERIVLQDLPVLRQQAQAAAGDAART 528 S LE+LLAGLAGV +G+ AG LE +YR+ LERI LQ+ R + DAA+ Sbjct: 472 SLGVLERLLAGLAGVSLGQSAGPAAELEPAYRLVLERIALQEAAANRAASTGVLADAAQE 531 Query: 529 LTLAAQMAALARSDAADNAFMNNALMLLRMYRMSLTMSPAEQRTLAELVYSAMKK-RRVR 587 LT AAQMAALARSDAA+ AF+NNALMLLRMYR+SLTMSP EQRTLAELVYS++K+ RR R Sbjct: 532 LTRAAQMAALARSDAAETAFLNNALMLLRMYRLSLTMSPVEQRTLAELVYSSLKQRRRPR 591 Query: 588 ARRGKLFVAWAERSPLMPSLPG 609 RRGKLF+AWAERSPLMPSLPG Sbjct: 592 TRRGKLFLAWAERSPLMPSLPG 613 >ref|ZP_03832855.1| hypothetical protein PcarcW_16433 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 160 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 121 DAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDESGAYTTNERYAAAN 180 +A++P S D RL +A AT + G NPFTGLSR +L+ I YD+SG YTTNER AA Sbjct: 8 NAEVPDSSDPGRLGRAADATKFVNGSGKNPFTGLSRDQLALITYDDSGLYTTNERRAAWE 67 Query: 181 QRTALDQKY-W-APVFQRAL----ESGDWKPVITAALVFYASLSALEQTAYPDNYAQLLQ 234 + + DQ+Y W V +A+ SG + L Y +L A+EQ YP+ Y LQ Sbjct: 68 E--SYDQEYVWRKEVVAKAMAEYNSSGKLTGFFSEVLDHYKTLPAIEQAQYPEGYEAKLQ 125 Query: 235 QYLDL 239 +++DL Sbjct: 126 KWIDL 130 >ref|YP_003006264.1| hypothetical protein Dd1591_3985 [Dickeya zeae Ech1591] gb|ACT08785.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length = 253 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 73/216 (33%), Positives = 104/216 (48%), Gaps = 27/216 (12%) Query: 64 ASAVDNVTTAAVGSTEAVQVLLETVGGAARPITRNTLFAIEAQLVAARRGADAIAFA--- 120 ++A T + G+T+ + AR ++ A RRG AIA A Sbjct: 23 STAAQPATASTTGTTQDASSGAPQLSSMARLLSEAATRAAARDAGTDRRGLAAIADATIE 82 Query: 121 --------------DAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDE 166 DA++P S D QRL QA QATD L G+ NPF G+SR +L+ I YD+ Sbjct: 83 KLLGPGYNQNKAAYDAEVPDSTDPQRLAQATQATDFLNGKGTNPFKGMSRDQLALITYDD 142 Query: 167 SGAYTTNERYAAANQRTALDQKYWAPVFQRALESGDWKPVITAA-----LVFYASLSALE 221 SGA+T NER AA + +Q++ V R +E + K ++A+ L Y SL A+E Sbjct: 143 SGAFTVNERRAAWQESYDQNQEWKRAVVARIMEEYNSKGRVSASTYRSILDHYQSLPAIE 202 Query: 222 QTAYPDNYAQLLQQYLDLYQLQSPSSPNALPPQQQA 257 + PD YA L + +Q S +AL QQ+A Sbjct: 203 EAQLPDGYASQL-----MTMIQQGGSDDALTRQQEA 233 >ref|YP_003331728.1| hypothetical protein Dd586_0125 [Dickeya dadantii Ech586] gb|ACZ75023.1| conserved hypothetical protein [Dickeya dadantii Ech586] Length = 254 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 85/153 (55%), Gaps = 11/153 (7%) Query: 121 DAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDESGAYTTNERYAAAN 180 DA++P S D QRL QA QATD L G+ NPF G+SR +L+ I YD+SGA+T NER AA Sbjct: 98 DAEVPDSTDPQRLAQATQATDFLNGKGTNPFKGMSRDQLALITYDDSGAFTVNERRAAWK 157 Query: 181 QRTALDQKYWAPVFQRALESGDWKPVITAA-----LVFYASLSALEQTAYPDNYAQLLQQ 235 + A Q++ V R E + K ++ + L Y SL A+E+ PD YA L Sbjct: 158 ESNAQHQEWKRAVVARMNEEYERKGRVSGSTYQSILDHYQSLPAIEEAQLPDGYASQL-- 215 Query: 236 YLDLYQLQSPSSPNALPPQQQADLARMLETLVL 268 + Q+Q S + L QQ+A L +L L L Sbjct: 216 ---MTQIQQGGSDDTLTRQQEA-LRPLLNALTL 244 >ref|YP_002989603.1| hypothetical protein Dd703_4029 [Dickeya dadantii Ech703] gb|ACS87781.1| hypothetical protein Dd703_4029 [Dickeya dadantii Ech703] Length = 272 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 4/125 (3%) Query: 114 ADAIAFADAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDESGAYTTN 173 A+ A DAQLP ++DA L A+Q+TD L G+A+NPF G+SR +L+ I YD+SGA+T N Sbjct: 85 ANNKARYDAQLPDTDDADLLALAQQSTDYLNGKASNPFKGMSREQLALITYDDSGAFTVN 144 Query: 174 ERYAAANQRTALDQKYWAPVFQRAL----ESGDWKPVITAALVFYASLSALEQTAYPDNY 229 ER AA ++ ++ V +A+ +G + + L FY S A+EQ YPD Y Sbjct: 145 ERRAALSESNDQYNEWARKVVDKAVAEYNRTGKITSIYSDMLEFYQSQPAIEQAQYPDGY 204 Query: 230 AQLLQ 234 A LQ Sbjct: 205 AVQLQ 209