BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2647.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776906.1| 4-carboxymuconolactone decarboxylase domain-... 290 1e-76 ref|ZP_06839617.1| conserved hypothetical protein [Burkholderia ... 245 3e-63 ref|YP_001889195.1| carboxymuconolactone decarboxylase [Burkhold... 241 4e-62 ref|YP_554163.1| hypothetical protein Bxe_B1143 [Burkholderia xe... 241 7e-62 ref|ZP_02881548.1| Carboxymuconolactone decarboxylase [Burkholde... 241 7e-62 >ref|YP_003776906.1| 4-carboxymuconolactone decarboxylase domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64998.1| 4-carboxymuconolactone decarboxylase domain protein [Herbaspirillum seropedicae SmR1] Length = 191 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 148/186 (79%), Positives = 156/186 (83%) Query: 26 QPTRLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDT 85 + RLPAI RE M +Q AMLDAILAGPRKNLNGPFVAWIHSP LGELAQRLGAFCRY+T Sbjct: 3 KSNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYET 62 Query: 86 GLPLRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALV 145 GLPLRLSELAIL TAA WQSQAEW IHLPIA+EAGI P VAEQIR G +P F DE ++ Sbjct: 63 GLPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVI 122 Query: 146 WRFASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGED 205 W FA+ELYRDKRVSE TYA A MFGL VVVNLVGLLGYYALVAMTLN F MRAEGQGE Sbjct: 123 WNFANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEG 182 Query: 206 QLPFAE 211 LPFAE Sbjct: 183 DLPFAE 188 >ref|ZP_06839617.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] gb|EFG73158.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] Length = 184 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 126/183 (68%), Positives = 143/183 (78%), Gaps = 2/183 (1%) Query: 29 RLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDTGLP 88 RLP P+Q+A+LD IL+GPR+NLNGPF+ WIHSP L + AQRLGAFCRY TGLP Sbjct: 4 RLPHFDLSDATPEQKAVLDEILSGPRRNLNGPFLGWIHSPELAQQAQRLGAFCRYRTGLP 63 Query: 89 LRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALVWRF 148 LRLSELAIL TAA WQ+QAEW+IH PIA+EAG+ A AE IR G+ P F AD+AL+ F Sbjct: 64 LRLSELAILVTAARWQAQAEWYIHHPIALEAGVCAADAEAIREGRRPDFAEADDALIHDF 123 Query: 149 ASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGEDQLP 208 ASELY KRVS+ TYA+A E FG QVV+NLVGLLGYYALVAMTLN F MRA GQ D LP Sbjct: 124 ASELYDTKRVSDATYAKAVERFGHQVVINLVGLLGYYALVAMTLNVFGMRAVGQ--DSLP 181 Query: 209 FAE 211 FAE Sbjct: 182 FAE 184 >ref|YP_001889195.1| carboxymuconolactone decarboxylase [Burkholderia phytofirmans PsJN] gb|ACD19825.1| Carboxymuconolactone decarboxylase [Burkholderia phytofirmans PsJN] Length = 184 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 123/183 (67%), Positives = 142/183 (77%), Gaps = 2/183 (1%) Query: 29 RLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDTGLP 88 RLP A P+Q+A+LD IL+GPR NLNGPF+ WIHSP L + AQRLGAFCRY TGLP Sbjct: 4 RLPHFNPSAATPEQKAVLDEILSGPRGNLNGPFLGWIHSPELAQQAQRLGAFCRYRTGLP 63 Query: 89 LRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALVWRF 148 LRLSELAIL TAA WQ+QAEW+IH PIA++AG+ A A+ IR G+ P F AD+AL+ F Sbjct: 64 LRLSELAILVTAARWQAQAEWYIHYPIALQAGVSEADAQTIREGKRPDFADADDALIHDF 123 Query: 149 ASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGEDQLP 208 ASELY KRVS+ YA+A E FG QVV+NLVGLLGYYALVAMTLN F MRA GQ + LP Sbjct: 124 ASELYDTKRVSDAIYAKAVERFGHQVVINLVGLLGYYALVAMTLNVFGMRALGQ--ESLP 181 Query: 209 FAE 211 FAE Sbjct: 182 FAE 184 >ref|YP_554163.1| hypothetical protein Bxe_B1143 [Burkholderia xenovorans LB400] gb|ABE34813.1| putative membrane protein [Burkholderia xenovorans LB400] Length = 185 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 124/183 (67%), Positives = 142/183 (77%), Gaps = 2/183 (1%) Query: 29 RLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDTGLP 88 RLP P+Q+A+LD IL+GPR NLNGPF+ WIHSP L + AQRLGAFCRY TGLP Sbjct: 5 RLPHFDLSDATPEQKAVLDEILSGPRGNLNGPFLGWIHSPELAQQAQRLGAFCRYRTGLP 64 Query: 89 LRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALVWRF 148 LRLSELAIL TAA WQ+QAEW+IH PIA+EAG+ A AE IR G+ P F AD+AL+ F Sbjct: 65 LRLSELAILVTAARWQAQAEWYIHHPIALEAGVRAADAEAIRDGRRPDFAQADDALIHDF 124 Query: 149 ASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGEDQLP 208 ASELY KRVS+ TYA+A E FG +VV+NLVGLLGYYALVAMTLN F MRA GQ + LP Sbjct: 125 ASELYDTKRVSDATYAKAVERFGHRVVINLVGLLGYYALVAMTLNVFDMRAVGQ--ESLP 182 Query: 209 FAE 211 FAE Sbjct: 183 FAE 185 >ref|ZP_02881548.1| Carboxymuconolactone decarboxylase [Burkholderia graminis C4D1M] gb|EDT12977.1| Carboxymuconolactone decarboxylase [Burkholderia graminis C4D1M] Length = 184 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 124/183 (67%), Positives = 141/183 (77%), Gaps = 2/183 (1%) Query: 29 RLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDTGLP 88 RLPA P+Q+A+LD IL+GPR NLNGPF+ WIHSP L + AQRLGAFCRY TGLP Sbjct: 4 RLPAFQLSDATPEQKAVLDEILSGPRGNLNGPFLGWIHSPELAQQAQRLGAFCRYRTGLP 63 Query: 89 LRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALVWRF 148 LRLSELAIL TAA WQ+QAEW+IH PIA+EAG+ A AE IR G P F AD+AL++ F Sbjct: 64 LRLSELAILVTAARWQAQAEWYIHYPIALEAGVREADAEAIRNGLQPDFEDADDALIYDF 123 Query: 149 ASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGEDQLP 208 ASELY KRVS+ TYA+A FG +VV+NLVGLLGYYALVAMTLN F MRA GQ LP Sbjct: 124 ASELYDTKRVSDATYARALARFGHEVVINLVGLLGYYALVAMTLNVFDMRANGQ--QSLP 181 Query: 209 FAE 211 FAE Sbjct: 182 FAE 184