BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2646.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774403.1| AraC family transcription regulator protein ... 442 e-122 ref|YP_001632037.1| AraC family transcriptional regulator [Borde... 248 1e-63 gb|EFV85122.1| AraC family Transcriptional regulator [Achromobac... 247 3e-63 gb|EGP44537.1| AraC family regulatory helix-turn-helix protein 1... 245 9e-63 ref|YP_347991.1| AraC family transcriptional regulator [Pseudomo... 243 3e-62 >ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62495.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 245/271 (90%), Positives = 258/271 (95%) Query: 77 MRAHLTSVCPSAEVDAFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTP 136 MRAHLTSVCPSAEVD FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAV+GVMQVRTP Sbjct: 1 MRAHLTSVCPSAEVDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTP 60 Query: 137 QGVWLVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELI 196 QGVWLVPP RALWVPPQVEHEI MLSKVSMRTLYI + +G+ +G QCRLLEVSVLLRELI Sbjct: 61 QGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELI 120 Query: 197 LALLAEPREYAPLSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILDDPGRQF 256 LALLAEPR+YAP SRAGHVAELILSEL RAPAIPVAIPWP DRRLQAICEAIL DPGRQF Sbjct: 121 LALLAEPRDYAPQSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQF 180 Query: 257 SLADWAGLGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYR 316 SLADWAG+GGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRL+RGD VGVVAQALGYR Sbjct: 181 SLADWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYR 240 Query: 317 SQSAFSNMFRKALRSSPNHYLPRQEKRRITL 347 SQSAFSNMFRKALR++PNHYL RQE+RR++L Sbjct: 241 SQSAFSNMFRKALRTTPNHYLQRQERRRLSL 271 >ref|YP_001632037.1| AraC family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43769.1| transcriptional regulator, AraC family [Bordetella petrii] Length = 284 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 136/251 (54%), Positives = 169/251 (67%) Query: 87 SAEVDAFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQR 146 S + + +QH+P V A A++ + HSH RGQL+YA++GVM+V TP G W +P R Sbjct: 30 SRQAEDYQHVPRLVTALAKDFVPSETTGPHSHPRGQLVYAIEGVMRVSTPDGFWTLPSLR 89 Query: 147 ALWVPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELILALLAEPREY 206 ALWVPP H I+M+ KVSMRTLY+ + +C+++EVS LLRELILAL AEP EY Sbjct: 90 ALWVPPGTVHGIQMVGKVSMRTLYVHANAANSLWDRCQVVEVSGLLRELILALTAEPIEY 149 Query: 207 APLSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILDDPGRQFSLADWAGLGG 266 A R G +A L+L+EL AP IP+ IPWP+DRRLQ +C AIL PG ++ DW G Sbjct: 150 ALEGRGGQIATLLLTELKAAPVIPIRIPWPQDRRLQTVCRAILAQPGLARTVDDWGDEVG 209 Query: 267 ASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSNMFR 326 AS RT+IRLF E GL +R WVQQV L+EAL RL+ G V VA LGYRS SAFS MFR Sbjct: 210 ASGRTLIRLFQAEVGLNYRQWVQQVRLAEALHRLSLGQPVARVAAELGYRSPSAFSAMFR 269 Query: 327 KALRSSPNHYL 337 +AL S P YL Sbjct: 270 RALGSPPQAYL 280 >gb|EFV85122.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 268 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 143/266 (53%), Positives = 173/266 (65%), Gaps = 2/266 (0%) Query: 77 MRAHLTSVCPSAEVDA--FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVR 134 M T + P+ +DA +QH P V A A+E A AHSH R QL+YA++GVM+V Sbjct: 1 MPTRPTRLDPARSIDAQDYQHRPRGVTAMAKEFPAGARTGAHSHPRAQLIYAIEGVMRVT 60 Query: 135 TPQGVWLVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRE 194 TP G W +PP RALWVP V H + M+ VSMR+LYI + QC+++EVS LLRE Sbjct: 61 TPSGFWALPPLRALWVPAGVSHGVDMVGAVSMRSLYIQADAARAYWPQCQVIEVSGLLRE 120 Query: 195 LILALLAEPREYAPLSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILDDPGR 254 LILAL AEP +Y RA VA LILSEL A +P+ IPWPRDRRLQ ICEAILD PG Sbjct: 121 LILALTAEPIDYPLGGRAEQVAALILSELAAARVVPIQIPWPRDRRLQIICEAILDRPGL 180 Query: 255 QFSLADWAGLGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALG 314 Q + DW GAS RT+IRLF E GL +R WVQQV L++A+ RL+ G V +A LG Sbjct: 181 QRGIEDWGSEVGASARTLIRLFQAELGLNYRQWVQQVRLADAVCRLSLGVPVARIAADLG 240 Query: 315 YRSQSAFSNMFRKALRSSPNHYLPRQ 340 YRS SAFS MF +AL + P YL RQ Sbjct: 241 YRSASAFSAMFHRALGAPPQRYLHRQ 266 >gb|EGP44537.1| AraC family regulatory helix-turn-helix protein 11 [Achromobacter xylosoxidans AXX-A] Length = 268 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 141/254 (55%), Positives = 168/254 (66%), Gaps = 2/254 (0%) Query: 86 PSAEVDA--FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVP 143 P+ +DA +Q P V A A+E +A AHSH R QL+YAV+GVM V TP G W +P Sbjct: 10 PARSIDAQDYQDRPRGVTAMAKEFTAGARTGAHSHPRAQLIYAVEGVMHVTTPSGFWALP 69 Query: 144 PQRALWVPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELILALLAEP 203 P RALWVP V H + M+ VSMR+LYI Q QC+++EVS LLRELILAL AEP Sbjct: 70 PLRALWVPAGVPHGVDMIGAVSMRSLYIHPDAAQAYWPQCQVIEVSGLLRELILALTAEP 129 Query: 204 REYAPLSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILDDPGRQFSLADWAG 263 +Y RA VA LILSEL A +P+ IPWPRDRRLQ ICEAILD PG Q + DWA Sbjct: 130 IDYPLGGRAEQVAALILSELAAARVVPIQIPWPRDRRLQTICEAILDRPGLQRGIEDWAS 189 Query: 264 LGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSN 323 GAS RT+IRLF E GL +R WVQQV L++A+ RL+ G V +A LGYRS SAFS Sbjct: 190 EVGASARTLIRLFQAELGLNYRQWVQQVRLADAVCRLSLGVPVARIAADLGYRSPSAFSA 249 Query: 324 MFRKALRSSPNHYL 337 MF +AL + P YL Sbjct: 250 MFHRALGAPPQRYL 263 >ref|YP_347991.1| AraC family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA74002.1| putative AraC-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 271 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 166/247 (67%) Query: 93 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVDGVMQVRTPQGVWLVPPQRALWVPP 152 +Q +P + R+ + + H HR GQLLYA +GVM+V T +G+W++PP+RALW+PP Sbjct: 24 YQDVPRVMTVLVRDQATGEYNEPHVHRHGQLLYASNGVMRVATERGLWILPPKRALWIPP 83 Query: 153 QVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELILALLAEPREYAPLSRA 212 V H+ MLS V MR++YI +G C++LE+ LLRELILAL +P EY R Sbjct: 84 GVIHDQLMLSAVKMRSIYIEPQVCAGLGDHCKVLEIPGLLRELILALAEQPIEYPQEGRN 143 Query: 213 GHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILDDPGRQFSLADWAGLGGASVRTV 272 H+ LILSEL A +P+ +PWP DRRL +CEAIL DPG+ S+ WA GAS RT+ Sbjct: 144 AHIVALILSELQAARTLPIEVPWPVDRRLVTVCEAILQDPGQDHSIGYWADRVGASSRTL 203 Query: 273 IRLFPKETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSNMFRKALRSS 332 IRLF ETGL FRHW+QQV L+ A+ RL +G +VGV+A+ LGY SQSAFS MFR+ + S Sbjct: 204 IRLFVNETGLNFRHWLQQVRLATAIDRLDQGQSVGVIARDLGYASQSAFSAMFRRVMGES 263 Query: 333 PNHYLPR 339 P +L R Sbjct: 264 PREFLVR 270