BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2639.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_559593.1| hypothetical protein Bxe_A1413 [Burkholderia xe...   112   1e-23
ref|YP_003911005.1| hypothetical protein BC1003_5803 [Burkholder...   112   2e-23
ref|ZP_06841308.1| conserved hypothetical protein [Burkholderia ...   111   3e-23
ref|ZP_03267119.1| conserved hypothetical protein [Burkholderia ...   110   1e-22
ref|YP_003609062.1| hypothetical protein BC1002_5641 [Burkholder...   109   1e-22

>ref|YP_559593.1| hypothetical protein Bxe_A1413 [Burkholderia xenovorans LB400]
 gb|ABE31541.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 94

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 67/94 (71%)

Query: 23  MPEMHFRVRWPDDTVTDCYSPSLVVKEHLEEGRSYALADFVQRSATALNIGSERVRAKYG 82
           MP MHFR++WPD    +CYSPSLV+ +    G +YAL DFV+RS  AL I SERVRAKYG
Sbjct: 1   MPVMHFRIQWPDGDEANCYSPSLVIGDFFTPGHAYALEDFVERSRQALGIASERVRAKYG 60

Query: 83  FACSSALDQLRRIEELAARFEASADPVVRVESFT 116
           FACS+ALDQL +IE  AARF    D  V+V  F+
Sbjct: 61  FACSAALDQLAQIERDAARFRDRPDATVKVIEFS 94


>ref|YP_003911005.1| hypothetical protein BC1003_5803 [Burkholderia sp. CCGE1003]
 gb|ADN61714.1| hypothetical protein BC1003_5803 [Burkholderia sp. CCGE1003]
          Length = 94

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 23  MPEMHFRVRWPDDTVTDCYSPSLVVKEHLEEGRSYALADFVQRSATALNIGSERVRAKYG 82
           MP MHF+V+WPD +  +CYSPS+VV E    G+ YAL DFV R+  AL+IGSERVR KYG
Sbjct: 1   MPVMHFKVQWPDGSEANCYSPSMVVGEFFVAGQRYALDDFVGRAREALHIGSERVREKYG 60

Query: 83  FACSSALDQLRRIEELAARFEASADPVVRV 112
           FACS+A+DQL +IEELA RF +  +  V+V
Sbjct: 61  FACSAAMDQLAQIEELAQRFASDPNAEVKV 90


>ref|ZP_06841308.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG71208.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 94

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 66/94 (70%)

Query: 23  MPEMHFRVRWPDDTVTDCYSPSLVVKEHLEEGRSYALADFVQRSATALNIGSERVRAKYG 82
           MP MHFR++WPD    +CYSPSLV+ +    G +YAL DFV+RS  AL I SERVR KYG
Sbjct: 1   MPVMHFRIQWPDGDEANCYSPSLVIGDFFTPGHAYALEDFVERSRQALGIASERVREKYG 60

Query: 83  FACSSALDQLRRIEELAARFEASADPVVRVESFT 116
           FACS+ALDQL +IE  AARF    D  V+V  F+
Sbjct: 61  FACSAALDQLAQIEHDAARFRDRPDATVKVIEFS 94


>ref|ZP_03267119.1| conserved hypothetical protein [Burkholderia sp. H160]
 gb|EEA01343.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 94

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 23  MPEMHFRVRWPDDTVTDCYSPSLVVKEHLEEGRSYALADFVQRSATALNIGSERVRAKYG 82
           MP MHFRV+WPD T  +CYSPS VV E    G+ YAL DFV+R+  AL+IGSERVR KYG
Sbjct: 1   MPVMHFRVQWPDGTEANCYSPSTVVGEFFVAGQRYALGDFVERAREALHIGSERVREKYG 60

Query: 83  FACSSALDQLRRIEELAARFEASADPVVRV 112
           FACS+A+DQL +IE  A RF  +ADP  +V
Sbjct: 61  FACSAAMDQLAQIEAQAQRF--AADPQAQV 88


>ref|YP_003609062.1| hypothetical protein BC1002_5641 [Burkholderia sp. CCGE1002]
 gb|ADG19551.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 94

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/90 (61%), Positives = 66/90 (73%)

Query: 23  MPEMHFRVRWPDDTVTDCYSPSLVVKEHLEEGRSYALADFVQRSATALNIGSERVRAKYG 82
           MP MHFRV+WPD T  +CYSPS VV E+   G+ YAL DFV+R+  AL+IGSERVR KYG
Sbjct: 1   MPVMHFRVQWPDGTEANCYSPSTVVGEYFVAGQRYALDDFVERAREALHIGSERVREKYG 60

Query: 83  FACSSALDQLRRIEELAARFEASADPVVRV 112
           FACS+A+DQL RIE  A RF + A   V +
Sbjct: 61  FACSAAMDQLARIEAQAERFASDAQAKVSI 90