BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2635.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003546557.1| CheY-like response regulator [Sphingobium ja... 241 1e-61 ref|ZP_08210162.1| two component transcriptional regulator [Novo... 238 4e-61 ref|YP_001314850.1| two component transcriptional regulator [Sin... 238 5e-61 ref|ZP_01550656.1| DNA-binding response regulator [Stappia aggre... 238 8e-61 ref|YP_004536066.1| two component transcriptional regulator [Nov... 237 9e-61 >ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 131/243 (53%), Positives = 164/243 (67%), Gaps = 10/243 (4%) Query: 1 MHAQRHVLVVDDHADISEPLAAYLRRQDMQVSLAANAAQARALLQAQAFDLVVLDVMMPG 60 M + H+L+VDD I EPLA YL R +V+ NAA+AR L A A DLV+LD+MMPG Sbjct: 1 MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPG 60 Query: 61 EDGLSLCQSISQQHGTPVILLTALAASSDRIRGLETGADDYVVKPFDPHELLARIRSVLR 120 EDGLSLC+ I + PVILLTA + +DRI GLE GADDYV+KPF P EL+ARI+ + R Sbjct: 61 EDGLSLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFR 120 Query: 121 RV---GRQLPVPAKAASTGTVQRYVFDTWTLDVQRRELRDRDGTLVTLSSVEYRLLRALV 177 RV G+++ P A Y F W L Q R L D +G + LS+ EY L+ A Sbjct: 121 RVATGGQRVTAPDGAT-------YAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFA 173 Query: 178 EHPNTVLSRDRLLDLTAGSDALAFDRSIDSQVSRLRKKLEPDPRKPGLLKTVWGNGYLLA 237 PN VLSRD+LLD+T G +A AFDR+ID+Q+SRLRKK+EPDP+ P L+KTVWG GY L+ Sbjct: 174 TRPNQVLSRDQLLDITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTLS 233 Query: 238 ARV 240 A V Sbjct: 234 ADV 236 >ref|ZP_08210162.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gb|EGD57644.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 260 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 169/238 (71%), Gaps = 6/238 (2%) Query: 3 AQRHVLVVDDHADISEPLAAYLRRQDMQVSLAANAAQARALLQAQAFDLVVLDVMMPGED 62 A +L+VDD A + EPLA YL RQ V+ AA+AA+AR + + +DLV+LD+MMPGED Sbjct: 22 AATEILLVDDEAALREPLADYLARQGFVVTQAASAAEARGRIASAHYDLVLLDIMMPGED 81 Query: 63 GLSLCQSISQQHGTPVILLTALAASSDRIRGLETGADDYVVKPFDPHELLARIRSVLRRV 122 GLSLC+ +++ PVI +TA S+DRI GLE G DDYVVKPFDP EL+ARIRSVLRR Sbjct: 82 GLSLCRHLAETRRMPVIFITAKGESTDRIVGLEIGGDDYVVKPFDPRELVARIRSVLRRS 141 Query: 123 GRQLPVPAKAASTGTVQRYVFDTWTLDVQRRELRDRDGTLVTLSSVEYRLLRALVEHPNT 182 GR +P +A Y F++W LD +R L D +G +V +SS E+RLL A ++HP Sbjct: 142 GRVIPEAVEAT------LYEFESWRLDPLKRRLTDPEGVVVPISSAEFRLLMAFLDHPRQ 195 Query: 183 VLSRDRLLDLTAGSDALAFDRSIDSQVSRLRKKLEPDPRKPGLLKTVWGNGYLLAARV 240 VL RDRLLD+ G +A FDR++D+Q+SRLR+K+E D R P L++TVWG GY+LAA V Sbjct: 196 VLDRDRLLDMVQGREAHLFDRAVDNQISRLRRKIEIDSRNPQLIQTVWGGGYMLAAEV 253 >ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gb|ABR64917.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 239 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 132/235 (56%), Positives = 161/235 (68%), Gaps = 4/235 (1%) Query: 6 HVLVVDDHADISEPLAAYLRRQDMQVSLAANAAQARALLQAQAFDLVVLDVMMPGEDGLS 65 H+ VVDDH DI + + YL Q +VS+A + R +L+ A DLVVLD+MMPGEDGL+ Sbjct: 6 HIAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMPGEDGLT 65 Query: 66 LCQSISQQHGTPVILLTALAASSDRIRGLETGADDYVVKPFDPHELLARIRSVLRRVGRQ 125 +C+ + PVI LTA+A +DRI GLE GADDY+ KPF+P ELLARIR+VLRRV Sbjct: 66 VCRQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVN-S 124 Query: 126 LPVPAKAASTGTVQRYVFDTWTLDVQRRELRDRDGTLVTLSSVEYRLLRALVEHPNTVLS 185 LP T++ FD W LD RREL RDG V LS+ E+RLL A +EHP VLS Sbjct: 125 LPPQRSRIKAKTIR---FDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLVLS 181 Query: 186 RDRLLDLTAGSDALAFDRSIDSQVSRLRKKLEPDPRKPGLLKTVWGNGYLLAARV 240 RD+LLDLTAG A +FDRSID+QVSRLRKK+E DP+ P L+KT WG GY A V Sbjct: 182 RDQLLDLTAGRAAESFDRSIDNQVSRLRKKIESDPKNPSLIKTHWGGGYSFVAEV 236 >ref|ZP_01550656.1| DNA-binding response regulator [Stappia aggregata IAM 12614] gb|EAV40818.1| DNA-binding response regulator [Stappia aggregata IAM 12614] Length = 233 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 135/237 (56%), Positives = 168/237 (70%), Gaps = 5/237 (2%) Query: 9 VVDDHADISEPLAAYLRRQDMQVSLAANAAQARALLQAQAFDLVVLDVMMPGEDGLSLCQ 68 +VDDH DI E LA YL + ++ ++A NAAQAR L+A + DLVVLD+MMPGEDGLSLC+ Sbjct: 1 MVDDHRDIRETLARYLIKNGLRATVAENAAQARKTLKAASIDLVVLDIMMPGEDGLSLCR 60 Query: 69 SISQQHGTPVILLTALAASSDRIRGLETGADDYVVKPFDPHELLARIRSVLRRVGRQLPV 128 + + PVILLTA+A +DR+ GLE GADDYV KPF+P ELLARIR+VLRR V Sbjct: 61 HLVETGSMPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRRTSL---V 117 Query: 129 PAKAASTGTVQRYVFDTWTLDVQRRELRDRDGTLVTLSSVEYRLLRALVEHPNTVLSRDR 188 P K R FD W+L+V RREL D +GT V LSS E++LL A ++ P VL+RD+ Sbjct: 118 P-KERDPIEHDRLHFDGWSLNVSRRELLDPEGTSVALSSGEFQLLCAFLKRPKMVLNRDQ 176 Query: 189 LLDLTAGSDALAFDRSIDSQVSRLRKKLEPDPRKPGLLKTVWGNGYLLAARVSADPA 245 L+DLT G FDRSID+QVSRLR+K+E DP+ P L+KTVWG GY+ A V DPA Sbjct: 177 LMDLTTGRTPAVFDRSIDNQVSRLRRKIEIDPKDPKLIKTVWGGGYMFTADVK-DPA 232 >ref|YP_004536066.1| two component transcriptional regulator [Novosphingobium sp. PP1Y] emb|CCA94248.1| two component transcriptional regulator [Novosphingobium sp. PP1Y] Length = 244 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 134/245 (54%), Positives = 172/245 (70%), Gaps = 6/245 (2%) Query: 3 AQRHVLVVDDHADISEPLAAYLRRQDMQVSLAANAAQARALLQAQAFDLVVLDVMMPGED 62 A +L+VDD A + EPLA YL RQ VS A +AA+AR+ L+ + +LV+LD+MMPGED Sbjct: 5 APPRLLLVDDEAALREPLAEYLSRQGFAVSQAVSAAEARSRLREEKPELVLLDIMMPGED 64 Query: 63 GLSLCQSISQQHGTPVILLTALAASSDRIRGLETGADDYVVKPFDPHELLARIRSVLRRV 122 GLSLC+ + + PVI LTA ++DRI GLE GADDYVVKPF+P EL+ARIRSVLRR Sbjct: 65 GLSLCRHLVESQDLPVIFLTARGEATDRIVGLEIGADDYVVKPFEPRELVARIRSVLRRS 124 Query: 123 GRQLPVPAKAASTGTVQRYVFDTWTLDVQRRELRDRDGTLVTLSSVEYRLLRALVEHPNT 182 R VPA A + +VF+ W LD +R L D +G +V +SSVE+RLL A +EHP Sbjct: 125 SR---VPAAPAEN---EAFVFEGWHLDPLKRRLTDAEGAVVAISSVEFRLLMAFLEHPRQ 178 Query: 183 VLSRDRLLDLTAGSDALAFDRSIDSQVSRLRKKLEPDPRKPGLLKTVWGNGYLLAARVSA 242 VL+RDRLLD+ G +A FDR++D+QVSRLR+K+E D R P L++TVWG GY+LA V Sbjct: 179 VLNRDRLLDMVQGREAHLFDRAVDNQVSRLRRKIEVDSRNPQLIQTVWGGGYMLATDVKR 238 Query: 243 DPATP 247 P P Sbjct: 239 VPLAP 243