BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2634.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGH13091.1| sensor histidine kinase [Pseudomonas syringae pv.... 70 2e-10 ref|ZP_08550441.1| two-component sensor histidine kinase protein... 65 7e-09 ref|NP_790632.1| sensor histidine kinase [Pseudomonas syringae p... 64 1e-08 ref|YP_002873204.1| putative transmembrane two-component sensor ... 63 2e-08 gb|EGH68776.1| sensor histidine kinase [Pseudomonas syringae pv.... 60 2e-07 >gb|EGH13091.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 459 Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 16/200 (8%) Query: 3 VWPRSMTAQLLALLLLGLVAAHLIGLLLVQPNGTRIHVISRDQMAEHAAVAWRLAQ-LPA 61 +WP+ MT QL LLLL L+A++ I +L +Q G IH +SR E A+ Q L A Sbjct: 7 LWPKRMTQQLALLLLLALLASNAIAMLYLQRTGALIHPLSRTLAVERLITAYHATQGLSA 66 Query: 62 AQAQEALARASDGDTRYRLDPDPQIDAAHEEGGDQDLLRQRLQARLGLPPEA-LRISLRE 120 A LA D+ + P I + ++ L L RL LP E + + L Sbjct: 67 EDASRLLAAMQTPDSELWVSAWP-IANTLDMRAEEYRLVADLSHRLKLPAETTIGMQLER 125 Query: 121 ADDGPAL-------------LRIALRTPAGLWVNTQQQPLITQGWVRPLRFSVPVSTLPV 167 GPA LR ++ G ++N Q P W R L +++PV+T+PV Sbjct: 126 ISGGPAREHVFVAAGWAPLRLRTSIDLLNGSFLNGIQHPAGGYEWGRMLAYTLPVTTIPV 185 Query: 168 LLIVALFLRRILRPVKVPSR 187 LLIV F+RRI+RPVK ++ Sbjct: 186 LLIVVFFMRRIVRPVKTLAK 205 >ref|ZP_08550441.1| two-component sensor histidine kinase protein [Salinisphaera shabanensis E1L3A] ref|ZP_08552375.1| two-component sensor histidine kinase protein [Salinisphaera shabanensis E1L3A] gb|EGM30179.1| two-component sensor histidine kinase protein [Salinisphaera shabanensis E1L3A] gb|EGM34907.1| two-component sensor histidine kinase protein [Salinisphaera shabanensis E1L3A] Length = 443 Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 18/198 (9%) Query: 3 VWPRSMTAQLLALLLLGLVAAHLIGLLLVQPNGTR-IHVISRDQMAEHAAVAWR-LAQLP 60 +WPRS++ +++AL LL LV + L+ L R + + MA++ A A R L +P Sbjct: 1 MWPRSLSGRIVALTLLALVISQLVSFFLFMHERDRFLERVILGNMADNVAAAMRTLEFVP 60 Query: 61 AAQAQEALARASDGDTRYRLDPDP------QIDA----AHEEGGDQDLLRQRLQARLGLP 110 EA+A S D RYRL P + DA AH+ G+ + R++ +G Sbjct: 61 EGDRAEAVAALSTRDLRYRLAAAPGRAFAGRSDAANTFAHDMAGNMGIETTRVRVAIG-- 118 Query: 111 PEALRISLREADDGPALLRIALRTPAGLWVNTQQQPL-ITQGWVRPLRFSVPVSTLPVLL 169 P R R A D LR+A++ G+W+ +Q T+ W R ++ VS L +++ Sbjct: 119 PGLARGPNRRAGDA---LRMAVQIDDGVWLRARQMVFDPTRHWARSSLMTLVVSALLMVV 175 Query: 170 IVALFLRRILRPVKVPSR 187 IV L RRI P++ +R Sbjct: 176 IVVLTSRRITAPLRDLAR 193 >ref|NP_790632.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] ref|ZP_03399202.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] ref|ZP_07232613.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13] ref|ZP_07252422.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40] ref|ZP_07258844.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gb|AAO54327.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] gb|EEB57765.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1] gb|EGH98405.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 448 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 16/195 (8%) Query: 8 MTAQLLALLLLGLVAAHLIGLLLVQPNGTRIHVISRDQMAEHAAVAWRLAQ-LPAAQAQE 66 MT QL LLLL L+A++ I +L +Q G IH +SR E A+ Q L A A Sbjct: 1 MTQQLALLLLLALLASNAIAMLFLQRTGALIHPLSRTLAVERLITAYHATQGLSAEDASR 60 Query: 67 ALARASDGDTRYRLDPDPQIDAAHEEGGDQDLLRQRLQARLGLPPEA-LRISLREADDGP 125 LA D+ + P I + ++ L L RL LP E + + L GP Sbjct: 61 LLAAMQTPDSELWVSAWP-IANTLDMRAEEYRLVADLSHRLKLPAETTIGMQLERISGGP 119 Query: 126 AL-------------LRIALRTPAGLWVNTQQQPLITQGWVRPLRFSVPVSTLPVLLIVA 172 A LR ++ G ++N Q P W R L +++PV+T+PVLLIV Sbjct: 120 AREHVFVAAGWAPLRLRTSIDLLNGSYLNGIQHPAGGYEWGRMLAYTLPVTTIPVLLIVV 179 Query: 173 LFLRRILRPVKVPSR 187 F+RRI+RPVK ++ Sbjct: 180 FFMRRIVRPVKTLAK 194 >ref|YP_002873204.1| putative transmembrane two-component sensor histidine kinase transcriptional regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY49879.1| putative transmembrane two-component sensor histidine kinase transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 439 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 16/173 (9%) Query: 26 IGLLLVQPNGTRIHVISRDQMAEHAAVAWRLA-QLPAAQAQEALARASDGDTRYRLDPDP 84 I +L +Q G+ IH +SR E + A A L ++ + LA DTR+ + Sbjct: 19 IAMLFLQRTGSLIHPLSRRFSLERLSTAHHAAIDLTPSETEHLLAAIGTDDTRFWIAHTA 78 Query: 85 QIDAAHEEGGDQDLLRQRLQARLGLPPEAL------RISLREADD--------GPALLRI 130 ++ A E ++ L L+++L L P A R+S +A P LR Sbjct: 79 EV-APFELRPEEQRLADELRSQLQLDPAAAIGMQLERVSGADARTHVFSPAGWAPLRLRT 137 Query: 131 ALRTPAGLWVNTQQQPLITQGWVRPLRFSVPVSTLPVLLIVALFLRRILRPVK 183 ++ P G ++N Q P W R L +S+PV+TLPVLLIV F+ R++RPV+ Sbjct: 138 SVPLPNGSYLNAVQYPAGAYEWGRVLAYSLPVTTLPVLLIVMFFIARVVRPVR 190 >gb|EGH68776.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 197 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 16/194 (8%) Query: 9 TAQLLALLLLGLVAAHLIGLLLVQPNGTRIHVISRDQMAEHAAVAWRLAQ-LPAAQAQEA 67 T QL LLL+ L+A++ I +L +Q G IH +SR E A+ Q L A A Sbjct: 1 TQQLALLLLIALLASNAIAMLYLQRTGALIHPLSRTLAVERLITAYHATQGLSAEDASRL 60 Query: 68 LARASDGDTRYRLDPDPQIDAAHEEGGDQDLLRQRLQARLGLPPEA-LRISLREADDGPA 126 LA D+ + P I + ++ L L RL LP E + + L GPA Sbjct: 61 LAAMQTPDSELWVSAWP-IANTLDMRAEEYRLVADLSHRLKLPAETTIGMQLERISGGPA 119 Query: 127 L-------------LRIALRTPAGLWVNTQQQPLITQGWVRPLRFSVPVSTLPVLLIVAL 173 LR ++ G ++N Q P W R L +++PV+T+PVLLIV Sbjct: 120 REHVFVAAGWAPLRLRTSIDLLNGSFLNGIQHPAGGYEWGRMLAYTLPVTTIPVLLIVVF 179 Query: 174 FLRRILRPVKVPSR 187 F+RRI+RPVK ++ Sbjct: 180 FMRRIVRPVKTLAK 193