BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2633.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004304729.1| ATPase, histidine kinase-, DNA gyrase B-, an... 194 1e-47 ref|ZP_02925592.1| integral membrane sensor signal transduction ... 188 5e-46 ref|YP_001417323.1| integral membrane sensor signal transduction... 183 2e-44 ref|ZP_05085370.1| osmolarity sensor protein EnvZ [Pseudovibrio ... 182 3e-44 ref|ZP_08522010.1| sensor histidine kinase [Aeromonas caviae Ae398] 181 9e-44 >ref|YP_004304729.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] gb|ADZ71425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 469 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 122/238 (51%), Positives = 153/238 (64%), Gaps = 26/238 (10%) Query: 1 MQQRLRRFVEDRTRMLAAISHDLRTPITSLRLRAELVDDAALRTAMIRTLDEMRVMVEET 60 MQ RL RFV DRTRMLAAISHDLRTPITSLR+RAE +DD R MI LDEM M E T Sbjct: 253 MQDRLTRFVRDRTRMLAAISHDLRTPITSLRIRAEFIDDDEDREKMIAILDEMAQMTEAT 312 Query: 61 VRFARDDAHAEATREIDLAELLQELAQEHASQGRDVQITVQKNAQQKVQNNVLHETLAQQ 120 + FARD+A E R +DL L++ +A + + GRDV++ + Sbjct: 313 LAFARDEATQEERRSVDLGGLMESIAGDQSDLGRDVEVAARDR----------------- 355 Query: 121 DAPLRYRCRPVHLKRALSNLVDNAVRHGQRARLSLIVEHDGSLSILVDDDGPGIAEEHLQ 180 + CRPV LKRAL NLV+NAVR+G RAR+++ E G + VDDDGPGIA++ L Sbjct: 356 ---VVLACRPVALKRALRNLVENAVRYGTRARIAVRAE-GGQAVLTVDDDGPGIADDRLA 411 Query: 181 EVFKPFVRLDPARSG--GNFGLGLAIARSCIEAHGGLLELRNRRQPGDQGLQACISLP 236 +VF+PFVRL+ +RSG G GLGLAIARS + AHGG + L NR + GL+A + LP Sbjct: 412 DVFEPFVRLEESRSGETGGIGLGLAIARSIVHAHGGTIALENRPE---GGLRATVHLP 466 >ref|ZP_02925592.1| integral membrane sensor signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 453 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 152/238 (63%), Gaps = 26/238 (10%) Query: 1 MQQRLRRFVEDRTRMLAAISHDLRTPITSLRLRAELVDDAALRTAMIRTLDEMRVMVEET 60 MQ+RLRRFV+DRT+M+AA+SHDLRTPITS+RLRAE + +A R +I TLDEM+ + E T Sbjct: 238 MQERLRRFVQDRTQMVAAMSHDLRTPITSMRLRAEFISEADTREKIIATLDEMKAIAEST 297 Query: 61 VRFARDDAHAEATREIDLAELLQELAQEHASQGRDVQITVQKNAQQKVQNNVLHETLAQQ 120 + FAR++A E TR +DL LL+ L + A G DV Sbjct: 298 LAFAREEAATEPTRTVDLNALLESLCDDLAGLGWDVTFAPGNRTP--------------- 342 Query: 121 DAPLRYRCRPVHLKRALSNLVDNAVRHGQRARLSLIVEHDGSLSILVDDDGPGIAEEHLQ 180 +RCRP ++RA+ N+V+N+VR+G RAR++L V +L I VDDDG GI+EE + Sbjct: 343 -----WRCRPDAMRRAVRNVVENSVRYGHRARVALEVRGQRAL-ITVDDDGTGISEEDSE 396 Query: 181 EVFKPFVRLDPARS--GGNFGLGLAIARSCIEAHGGLLELRNRRQPGDQGLQACISLP 236 VF PFVRL+ +R+ G GLGL+IAR+ I +HGG + L NR PG GL+A I LP Sbjct: 397 RVFNPFVRLESSRNRGTGGVGLGLSIARTIIRSHGGDITLANR--PGG-GLRANIELP 451 >ref|YP_001417323.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gb|ABS67666.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 493 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 145/238 (60%), Gaps = 27/238 (11%) Query: 1 MQQRLRRFVEDRTRMLAAISHDLRTPITSLRLRAELVDDAALRTAMIRTLDEMRVMVEET 60 MQ+RL RFV+DRTRM AA+SHDLRTP+TSLRLRAE V D LR M+ T+ E++ M E + Sbjct: 254 MQERLTRFVDDRTRMFAALSHDLRTPLTSLRLRAEFVADDELREKMLGTIAEIQGMAEAS 313 Query: 61 VRFARDDAHAEATREIDLAELLQELAQEHASQGRDVQITVQKNAQQKVQNNVLHETLAQQ 120 + F R DA AE TR +DL+ L++ L + A G DV ++ Sbjct: 314 LAFVRADATAETTRTVDLSALVESLCDDLAEIGWDVTF--------------------EE 353 Query: 121 DAPLRYRCRPVHLKRALSNLVDNAVRHGQRARLSLIVEHDGSLSILVDDDGPGIAEEHLQ 180 + RCRP ++RA NLV+NAVR+G+RAR+ + D +L I+V+DDGPGIAEE + Sbjct: 354 SPKVGCRCRPDAVRRACRNLVENAVRYGKRARVRVERSGDAAL-IVVEDDGPGIAEELKE 412 Query: 181 EVFKPFVRLDPAR--SGGNFGLGLAIARSCIEAHGGLLELRNRRQPGDQGLQACISLP 236 +VF PF RL+ +R G GLGLAI R+ HGG + L NR GL A SLP Sbjct: 413 QVFAPFFRLESSRCMETGGHGLGLAIVRTVARRHGGDVTLANR----PSGLTAIFSLP 466 >ref|ZP_05085370.1| osmolarity sensor protein EnvZ [Pseudovibrio sp. JE062] gb|EEA94370.1| osmolarity sensor protein EnvZ [Pseudovibrio sp. JE062] Length = 492 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 143/238 (60%), Gaps = 26/238 (10%) Query: 1 MQQRLRRFVEDRTRMLAAISHDLRTPITSLRLRAELVDDAALRTAMIRTLDEMRVMVEET 60 MQ+RL RF+ DRTRMLAAISHDLRTPITSLR+RAE ++D R MI TLDEM+ MVEET Sbjct: 278 MQERLTRFISDRTRMLAAISHDLRTPITSLRIRAEFIEDDEDRERMIATLDEMQAMVEET 337 Query: 61 VRFARDDAHAEATREIDLAELLQELAQEHASQGRDVQITVQKNAQQKVQNNVLHETLAQQ 120 + F R+D+ E R +DL LL+ +A + G V + Q K Sbjct: 338 LAFTREDSKQEELRSVDLGGLLESIANDQEDMGNHVNVEAQSRVVLK------------- 384 Query: 121 DAPLRYRCRPVHLKRALSNLVDNAVRHGQRARLSLIVEHDGSLSILVDDDGPGIAEEHLQ 180 CRPV LKRA NL+ NA+R+G+ A +S V+ + + + D GPGI + L+ Sbjct: 385 -------CRPVALKRAFQNLIGNAIRYGEEAEVSFRVD-EAHAEVRISDRGPGIPQNRLE 436 Query: 181 EVFKPFVRLDPARS--GGNFGLGLAIARSCIEAHGGLLELRNRRQPGDQGLQACISLP 236 +VF+PFVRL+ +R+ G GLGLAI RS I A GG + L N + +GL A + LP Sbjct: 437 DVFEPFVRLEESRNEETGGIGLGLAITRSIIHAQGGTIRLENGEE---KGLIAIVRLP 491 >ref|ZP_08522010.1| sensor histidine kinase [Aeromonas caviae Ae398] Length = 461 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 145/238 (60%), Gaps = 26/238 (10%) Query: 1 MQQRLRRFVEDRTRMLAAISHDLRTPITSLRLRAELVDDAALRTAMIRTLDEMRVMVEET 60 M RL RFV+DRTRMLAAISHDLRTPITSLRLR+E + D + +TL +M M+ T Sbjct: 247 MHTRLDRFVQDRTRMLAAISHDLRTPITSLRLRSEFLADGEDKERFQQTLQQMEQMLAAT 306 Query: 61 VRFARDDAHAEATREIDLAELLQELAQEHASQGRDVQITVQKNAQQKVQNNVLHETLAQQ 120 + FAR++ EATRE+DL LL+ L ++A G+ V + Sbjct: 307 LSFAREEGQQEATRELDLVSLLESLCDDYADMGQPVTCLAEGKQV--------------- 351 Query: 121 DAPLRYRCRPVHLKRALSNLVDNAVRHGQRARLSLIVEHDGSLSILVDDDGPGIAEEHLQ 180 Y CR L+R L NL+ NA+++ A +SL V DG L ILV D GPGIAE L+ Sbjct: 352 -----YACRANTLRRVLQNLIGNAIKYAGGAEVSL-VRGDGELLILVRDQGPGIAESQLE 405 Query: 181 EVFKPFVRLDPARS--GGNFGLGLAIARSCIEAHGGLLELRNRRQPGDQGLQACISLP 236 EVFKPFVRLD AR+ G+ GLGLAIAR+ + HGG L L NR++ GL+A ISLP Sbjct: 406 EVFKPFVRLDEARNTESGSVGLGLAIARTLVHQHGGELSLHNRQE---GGLEARISLP 460