BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2631.p (480 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775108.1| MocR family transcription regulator protein ... 893 0.0 ref|YP_004751260.1| GntR family transcriptional regulator [Colli... 622 e-176 ref|ZP_03580839.1| transcriptional regulator, GntR family [Burkh... 595 e-168 ref|ZP_02885845.1| transcriptional regulator, GntR family with a... 595 e-168 ref|YP_001585381.1| transcriptional regulator [Burkholderia mult... 594 e-167 >ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63200.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 458/480 (95%), Positives = 469/480 (97%) Query: 1 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE 60 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE Sbjct: 1 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE 60 Query: 61 SQPQSGYFVREQAESIPRPVIKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG 120 SQPQSGYFVREQ E+ P+P ++ S+ DHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG Sbjct: 61 SQPQSGYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG 120 Query: 121 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEE 180 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHP+LLRQIARRYLENGLKVDPEE Sbjct: 121 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEE 180 Query: 181 IVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVG 240 IV+TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRG+DVG Sbjct: 181 IVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVG 240 Query: 241 VLEERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGN 300 LEERMKTQ +AACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMP+IENAVYSELYYGN Sbjct: 241 ALEERMKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGN 300 Query: 301 AHPSSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR 360 AHPSSLKNYDR+GLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR Sbjct: 301 AHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR 360 Query: 361 AIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRV 420 AIAEYLTQGGYERHLRRVRR FAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQ V Sbjct: 361 AIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQGV 420 Query: 421 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVGKLVEELAG 480 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSY WSKETEQALKLVGKLVEELAG Sbjct: 421 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKLVEELAG 480 >ref|YP_004751260.1| GntR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60437.1| transcriptional regulator, GntR family [Collimonas fungivorans Ter331] Length = 518 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 309/481 (64%), Positives = 383/481 (79%), Gaps = 11/481 (2%) Query: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 PLY++FA+Q+ AS+++GVLRPG+R++SVR ASQQH +S+TTVVRAYELLES G++ES PQ Sbjct: 40 PLYQRFAEQMKASLQNGVLRPGDRLSSVRQASQQHGLSITTVVRAYELLESSGLVESHPQ 99 Query: 65 SGYFVREQAESIPRPVIKPPSQADHP-------AWQESTEVDVSRLVLATLKTIQQDGTV 117 SGYFVR + + + P Q D P S EVDVSR VLATLK+I Q+ Sbjct: 100 SGYFVRARFPA----AMSPAQQRDSPDEPGRSMPLPVSAEVDVSRHVLATLKSIHQNDAN 155 Query: 118 PLGSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVD 177 PLGSPYP+PALFP+ R++QY G I R V DDLPPGHP+L+RQI RR+LE GL VD Sbjct: 156 PLGSPYPDPALFPARRISQYNGAILRSGGPLGVLDDLPPGHPELIRQIVRRHLETGLSVD 215 Query: 178 PEEIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGL 237 P ++VVTVGATEAINLCLQAVA+ GDTIAVE+PTFYAMLHAIERLGMRA+EIPTDP+ G+ Sbjct: 216 PGDVVVTVGATEAINLCLQAVAKAGDTIAVESPTFYAMLHAIERLGMRAIEIPTDPRLGM 275 Query: 238 DVGVLEERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELY 297 DV L++ M+ QPVAACMVMPNFQNPLGF+MP+ K +LV L ++ MP+IEN V +ELY Sbjct: 276 DVAELKKIMQNQPVAACMVMPNFQNPLGFEMPEESKRQLVELGSRYNMPIIENGVCNELY 335 Query: 298 YGNAHPSSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTA 357 +G AHPS LK YD+ G+VL+CSSFSKSLTSAYRIGW +PGRYR QVEKLKFLNTL+T T Sbjct: 336 FGAAHPSVLKAYDKRGIVLYCSSFSKSLTSAYRIGWTLPGRYREQVEKLKFLNTLSTSTL 395 Query: 358 PQRAIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELP 417 PQRAIA YLT GGY+RHLRRVRR Q+ D+M FV RFFPAGT+++ P GGYVLW+ELP Sbjct: 396 PQRAIAAYLTAGGYDRHLRRVRRTLQQRCDIMSAFVGRFFPAGTRITRPAGGYVLWIELP 455 Query: 418 QRVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVGKLVEE 477 +D+M LYR++LA GIT+APGR+F+ ++ Y FIR+NYSY W+ E EQA++ +G+++ Sbjct: 456 AAIDSMALYRQALAEGITIAPGRLFSTSDAYRSFIRMNYSYSWTPEIEQAIRRLGEMLAA 515 Query: 478 L 478 + Sbjct: 516 M 516 >ref|ZP_03580839.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2] gb|EEE04769.1| transcriptional regulator, GntR family [Burkholderia multivorans CGD2] Length = 474 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 303/477 (63%), Positives = 370/477 (77%), Gaps = 7/477 (1%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY++FA+ + IR GV R G+R+ SVR ASQQH++S+TTV+ AY LLESRG++ES+PQS Sbjct: 3 LYEKFANDIERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQS 62 Query: 66 GYFVREQAESIPRPV--IKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPY 123 GYFV + + PV ++P S+ VDVSRLVL+TL++I D VPLGSPY Sbjct: 63 GYFVNLRRDDAHAPVRELRPSKPI-----AISSSVDVSRLVLSTLRSIGTDDAVPLGSPY 117 Query: 124 PNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEEIVV 183 P+P+LFP +L +YA R S V D LPPGHP L+RQIARRYLENG+ VDP EI+V Sbjct: 118 PDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIV 177 Query: 184 TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVGVLE 243 TVGATEAINLCLQAVA+PGDTIAVE+PTFYAMLHAIERLGM+A+E+ T P+ G+D+ L Sbjct: 178 TVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMKAIEVATHPEYGIDIAALA 237 Query: 244 ERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGNAHP 303 K+QP+AACMVMPNFQNPLGFQMPD K LV A + MPLIEN VY+ELY+GNAHP Sbjct: 238 AIAKSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATRVNMPLIENGVYNELYFGNAHP 297 Query: 304 SSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIA 363 S+LK++DREG+VLHCSSFSKSLT+AYRIGWA+PGRYR QVEKLKFLNTLATP+ PQ AIA Sbjct: 298 SALKSFDREGIVLHCSSFSKSLTAAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIA 357 Query: 364 EYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRVDAM 423 E+L + GYE HLRR+R+ +AQQ ++MR V RFFP GT++S P GGYVLW+ELP +VDAM Sbjct: 358 EFLERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWIELPAQVDAM 417 Query: 424 ELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVGKLVEELAG 480 LY+ +L GIT+ PG +F+ T+ Y +FIRLNYS WS E EQA+ VGKL G Sbjct: 418 RLYQLALDEGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAARVG 474 >ref|ZP_02885845.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia graminis C4D1M] gb|EDT08502.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia graminis C4D1M] Length = 477 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 297/474 (62%), Positives = 377/474 (79%), Gaps = 1/474 (0%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY++ AD++ S+R GV GERI SVR ASQQH VS+ TV+ AY LLESRGI+E++PQS Sbjct: 3 LYEKLADEITQSVRRGVFAAGERIPSVRQASQQHGVSIKTVLHAYALLESRGIVETRPQS 62 Query: 66 GYFVREQAESIPRP-VIKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYP 124 GYFVRE A + RP + S+A P + EVDVSRLVL+TL++I+ VP GSPYP Sbjct: 63 GYFVREAALNAFRPETRRGDSKAAPPVAPVAAEVDVSRLVLSTLRSIRAHDAVPFGSPYP 122 Query: 125 NPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEEIVVT 184 +P+LFP R+ QYA IAR + ++ DDLPPG+P+L+RQIARRY ENG+ VDP EIV+T Sbjct: 123 DPSLFPWRRINQYANAIARRQASWNLIDDLPPGNPELIRQIARRYAENGMPVDPGEIVIT 182 Query: 185 VGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVGVLEE 244 +GATEAINL LQA+A+PGDT+AVE+PT+YAMLHAIERLGMRA+E+ T P G+D+ L + Sbjct: 183 LGATEAINLSLQAIAKPGDTVAVESPTYYAMLHAIERLGMRAIEVATHPVDGIDIDALAQ 242 Query: 245 RMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGNAHPS 304 + Q +AACMVMPNFQNPLGFQMPD+ K +LV L HQ+P+IEN VY ELY+G + PS Sbjct: 243 VIARQKIAACMVMPNFQNPLGFQMPDARKRQLVELLAAHQIPVIENDVYQELYFGESRPS 302 Query: 305 SLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIAE 364 +LK++D +GLVLHC+SFSKSLT++YRIGWA+PGRYRAQVEKLKFLNTL TP+ PQ A+A+ Sbjct: 303 TLKSFDTQGLVLHCASFSKSLTASYRIGWALPGRYRAQVEKLKFLNTLTTPSVPQVAVAD 362 Query: 365 YLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRVDAME 424 YL Q GY+RHLR VR+V+ QQ +M V RFFPAGT++S PQGGYVLWVELP+RVD+M+ Sbjct: 363 YLRQDGYDRHLRHVRKVYRQQASIMSAMVQRFFPAGTRISAPQGGYVLWVELPERVDSMK 422 Query: 425 LYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVGKLVEEL 478 LYR +LA GITV PG +F+ N + HFIRLNYSY W+ ++E ALK +G+L+ ++ Sbjct: 423 LYRAALARGITVGPGMMFSTRNDFRHFIRLNYSYPWTADSEAALKTLGELITQM 476 >ref|YP_001585381.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001941868.1| 2-aminoadipate transaminase [Burkholderia multivorans ATCC 17616] gb|ABX19089.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia multivorans ATCC 17616] dbj|BAG47878.1| 2-aminoadipate transaminase [Burkholderia multivorans ATCC 17616] Length = 474 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 302/477 (63%), Positives = 370/477 (77%), Gaps = 7/477 (1%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY++FA+ + IR GV R G+R+ SVR ASQQH++S+TTV+ AY LLESRG++ES+PQS Sbjct: 3 LYEKFANDIERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQS 62 Query: 66 GYFVREQAESIPRPV--IKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPY 123 GYFV + + PV ++P S+ VDVSRLVL+TL++I D VPLGSPY Sbjct: 63 GYFVNLRRDDAHAPVRELRPSKPI-----AISSSVDVSRLVLSTLRSIGTDDAVPLGSPY 117 Query: 124 PNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEEIVV 183 P+P+LFP +L +YA R S V D LPPGHP L+RQIARRYLENG+ VDP EI+V Sbjct: 118 PDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIV 177 Query: 184 TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVGVLE 243 TVGATEAINLCLQAVA+PGDTIAVE+PTFYAMLHAIER+GM+A+E+ T P+ G+D+ L Sbjct: 178 TVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALA 237 Query: 244 ERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGNAHP 303 K+QP+AACMVMPNFQNPLGFQMPD K LV A + MPLIEN VY+ELY+GNAHP Sbjct: 238 AIAKSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATRVNMPLIENGVYNELYFGNAHP 297 Query: 304 SSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIA 363 S+LK++DREG+VLHCSSFSKSLT+AYRIGWA+PGRYR QVEKLKFLNTLATP+ PQ AIA Sbjct: 298 SALKSFDREGIVLHCSSFSKSLTAAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIA 357 Query: 364 EYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRVDAM 423 E+L + GYE HLRR+R+ +AQQ ++MR V RFFP GT++S P GGYVLW+ELP +VDAM Sbjct: 358 EFLERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWIELPAQVDAM 417 Query: 424 ELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVGKLVEELAG 480 LY+ +L GIT+ PG +F+ T+ Y +FIRLNYS WS E EQA+ VGKL G Sbjct: 418 RLYQLALDEGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAARVG 474