BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2630.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004349219.1| hypothetical protein bgla_2g12590 [Burkholde...    56   2e-06
ref|YP_001860900.1| transcriptional regulator [Burkholderia phym...    54   6e-06
ref|ZP_02891112.1| conserved hypothetical protein [Burkholderia ...    54   6e-06
ref|ZP_02904908.1| conserved hypothetical protein [Burkholderia ...    54   7e-06

>ref|YP_004349219.1| hypothetical protein bgla_2g12590 [Burkholderia gladioli BSR3]
 gb|AEA63707.1| hypothetical protein bgla_2g12590 [Burkholderia gladioli BSR3]
          Length = 106

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query: 22 GVPPEVLLIVETLQADAEEKEGGALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEMNE 81
          G+ P ++ ++  L+    E  G A SLA+LSKR+Q+ MSTLRR L+ L+ AG+ K E+NE
Sbjct: 23 GLDPVIVAVLGCLRDALSETPGRAWSLAKLSKRSQVPMSTLRRTLTELDAAGITKTELNE 82

Query: 82 DGTGSVSL 89
          +G G  +L
Sbjct: 83 EGIGHAAL 90


>ref|YP_001860900.1| transcriptional regulator [Burkholderia phymatum STM815]
 gb|ACC73854.1| transcriptional regulator [Burkholderia phymatum STM815]
          Length = 102

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query: 25 PEVLLIVETLQADAEEKEGGALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEMNEDGT 84
          P V  +++ L   A E      SLA++SKRT+L MSTLRR+L+ L+ AGV+ V+M+E+G 
Sbjct: 23 PTVEQLLQLLWEAASESPSKPWSLAKISKRTELPMSTLRRYLTQLQSAGVILVQMDEEGR 82

Query: 85 GSVSLLV 91
          G+ +L V
Sbjct: 83 GTAALTV 89


>ref|ZP_02891112.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gb|EDT03310.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 111

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 6  MPAQQDADLQARAQQMGVPPEVLLIVETLQADAEEKEGGALSLARLSKRTQLRMSTLRRF 65
          +PA +   + + +    + P ++  + TL   A +  G   SL +++KRTQL MSTLRR 
Sbjct: 10 VPAHESNPMTSESDDAPLDPALVATLATLHEAATDPSGKTWSLPKIAKRTQLPMSTLRRV 69

Query: 66 LSALEEAGVVKVEMNEDGTGSVSL 89
          L+ L+ AG+    +++DGTGS +L
Sbjct: 70 LTQLDAAGLSATTLSDDGTGSAAL 93


>ref|ZP_02904908.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT43979.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 111

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 50/83 (60%)

Query: 7  PAQQDADLQARAQQMGVPPEVLLIVETLQADAEEKEGGALSLARLSKRTQLRMSTLRRFL 66
          PA +   + + +  + + P ++  + TL   A +  G   SL +++KRTQL MSTLRR L
Sbjct: 11 PAHESEPMTSESDDVPLDPALVATLATLHEAATDPSGKTWSLPKIAKRTQLPMSTLRRML 70

Query: 67 SALEEAGVVKVEMNEDGTGSVSL 89
          + L+ AG+    +++DGTGS +L
Sbjct: 71 TQLDAAGLSATTLSDDGTGSAAL 93