BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2628.p         (332 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775106.1| leucine-responsive regulatory DNA-binding tr...   317   2e-84
ref|ZP_02884897.1| transcriptional regulator, AsnC family [Burkh...   271   1e-70
ref|YP_003907824.1| AsnC family transcriptional regulator [Burkh...   268   6e-70
ref|YP_004229087.1| AsnC family transcriptional regulator [Burkh...   268   8e-70
ref|YP_001857001.1| AsnC family transcriptional regulator [Burkh...   266   4e-69

>ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63198.1| leucine-responsive regulatory DNA-binding transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 160/162 (98%), Positives = 162/162 (100%)

Query: 171 MRTQQQSIRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGY 230
           MRTQQQS+RTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVI+GY
Sbjct: 1   MRTQQQSVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGY 60

Query: 231 YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 290
           YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI
Sbjct: 61  YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 120

Query: 291 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 332
           RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD
Sbjct: 121 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 162


>ref|ZP_02884897.1| transcriptional regulator, AsnC family [Burkholderia graminis
           C4D1M]
 gb|EDT09691.1| transcriptional regulator, AsnC family [Burkholderia graminis
           C4D1M]
          Length = 166

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 149/162 (91%)

Query: 171 MRTQQQSIRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGY 230
           MRTQ+Q +RTLDKLDH+IL +LQ+DGR++MK+L EQVGLSVTPCIERV+RMERDGVI+GY
Sbjct: 1   MRTQRQPVRTLDKLDHKILRLLQQDGRMAMKDLAEQVGLSVTPCIERVKRMERDGVITGY 60

Query: 231 YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 290
           YARVNP  LGA LLVFVEITL+HKSGNMF+QFRREV +IPEV ECHLVSGDFDYLIKARI
Sbjct: 61  YARVNPAELGAALLVFVEITLDHKSGNMFDQFRREVQKIPEVLECHLVSGDFDYLIKARI 120

Query: 291 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 332
             MA+YRKLLGDILLQLPGA QSKSYVVMEEIKETL +P+ D
Sbjct: 121 GEMADYRKLLGDILLQLPGAVQSKSYVVMEEIKETLTIPVGD 162


>ref|YP_003907824.1| AsnC family transcriptional regulator [Burkholderia sp. CCGE1003]
 gb|ADN58533.1| transcriptional regulator, AsnC family [Burkholderia sp. CCGE1003]
          Length = 166

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 132/162 (81%), Positives = 148/162 (91%)

Query: 171 MRTQQQSIRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGY 230
           MRTQ+Q +R LDKLDH+IL +LQ+DGR++MK+L EQVGLSVTPCIERV+RMERDGVI+GY
Sbjct: 1   MRTQRQPVRALDKLDHKILRLLQQDGRMAMKDLAEQVGLSVTPCIERVKRMERDGVITGY 60

Query: 231 YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 290
           YARVNP  LGA LLVFVEITL+HKSGNMF+QFRREV +IPEV ECHLVSGDFDYLIKARI
Sbjct: 61  YARVNPAELGAALLVFVEITLDHKSGNMFDQFRREVQKIPEVLECHLVSGDFDYLIKARI 120

Query: 291 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 332
             MA+YRKLLGDILLQLPGA QSKSYVVMEEIKETL +P+ D
Sbjct: 121 GEMADYRKLLGDILLQLPGAVQSKSYVVMEEIKETLTIPVGD 162


>ref|YP_004229087.1| AsnC family transcriptional regulator [Burkholderia sp. CCGE1001]
 gb|ADX56027.1| transcriptional regulator, AsnC family [Burkholderia sp. CCGE1001]
          Length = 166

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 132/162 (81%), Positives = 148/162 (91%)

Query: 171 MRTQQQSIRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGY 230
           MRTQ+Q +R LDKLDH+IL +LQ+DGR++MK+L EQVGLSVTPCIERV+RMERDGVI+GY
Sbjct: 1   MRTQRQPVRALDKLDHKILRLLQQDGRMAMKDLAEQVGLSVTPCIERVKRMERDGVITGY 60

Query: 231 YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 290
           YARVNP  LGA LLVFVEITL+HKSGNMF+QFRREV +IPEV ECHLVSGDFDYLIKARI
Sbjct: 61  YARVNPAELGAALLVFVEITLDHKSGNMFDQFRREVQKIPEVLECHLVSGDFDYLIKARI 120

Query: 291 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 332
             MA+YRKLLGDILLQLPGA QSKSYVVMEEIKETL +P+ D
Sbjct: 121 GEMADYRKLLGDILLQLPGAVQSKSYVVMEEIKETLTIPVGD 162


>ref|YP_001857001.1| AsnC family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC69955.1| transcriptional regulator, AsnC family [Burkholderia phymatum
           STM815]
          Length = 162

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 131/162 (80%), Positives = 145/162 (89%)

Query: 171 MRTQQQSIRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGY 230
           MRTQ+  +R LDKLDH+IL +LQ DGRI+MKEL EQVGLSVTPCIERV+RMERDGVI+GY
Sbjct: 1   MRTQRHPVRALDKLDHKILKILQIDGRIAMKELSEQVGLSVTPCIERVKRMERDGVITGY 60

Query: 231 YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 290
           YARVNP  LGA LLVFVEITL+HKSGNMF+QFRREV +IPEV ECHLVSGDFDYLIKARI
Sbjct: 61  YARVNPAELGAALLVFVEITLDHKSGNMFDQFRREVQKIPEVLECHLVSGDFDYLIKARI 120

Query: 291 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 332
             MA+YRKLLGDILLQLPGA QSKSYVVMEEIKETL + + +
Sbjct: 121 GEMADYRKLLGDILLQLPGAVQSKSYVVMEEIKETLTIAVGE 162