BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2624.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_982333.1| radical SAM domain-containing protein [Polaromo... 296 1e-78 ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S1... 295 3e-78 ref|ZP_08506841.1| Radical SAM domain protein [Methyloversatilis... 293 7e-78 ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EP... 291 3e-77 ref|YP_002967231.1| putative oxidoreductase [Methylobacterium ex... 289 2e-76 >ref|YP_982333.1| radical SAM domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM37412.1| Radical SAM domain protein [Polaromonas naphthalenivorans CJ2] Length = 362 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 146/191 (76%), Positives = 166/191 (86%) Query: 1 MVMTTGTPNATDRGAQLLCESAFGVKSAVNLPIQGQCEPPDDNAWFRRMADAGIDTLGMH 60 MVMTTGTPNATDRGAQ+LCESA +++AV+LP+Q QCEPPDD+ WF+RM DAGIDTLGMH Sbjct: 168 MVMTTGTPNATDRGAQVLCESALAIRAAVDLPLQAQCEPPDDDRWFQRMRDAGIDTLGMH 227 Query: 61 LEAVTPEVRKRIMPGKATVPVERYMEAFAAAVEVFGRGQVSTYILAGLGDSDEAILKMSE 120 LE VTPE+R RIMPGKATVP+ RYM AF A+V VFGRGQVSTYILAGLGD+ EAIL +S Sbjct: 228 LEVVTPELRARIMPGKATVPISRYMAAFEASVRVFGRGQVSTYILAGLGDTPEAILSISG 287 Query: 121 QLIALGVYPFVVPFVPISGTPLEDHPSPDALAMRRLLAPLAAMLEHAGMRSGDAKAGCGK 180 QL+ALGVYPFVVPFVPISGTPLEDHP+P A M+ LL PL AM+ AG+R+ D KAGCGK Sbjct: 288 QLLALGVYPFVVPFVPISGTPLEDHPAPPADFMKALLEPLGAMVARAGLRANDIKAGCGK 347 Query: 181 CGACSSLSSFE 191 CGACSSLS +E Sbjct: 348 CGACSSLSVYE 358 >ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S110] gb|ACS17223.1| Radical SAM domain protein [Variovorax paradoxus S110] Length = 360 Score = 295 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 147/193 (76%), Positives = 164/193 (84%) Query: 1 MVMTTGTPNATDRGAQLLCESAFGVKSAVNLPIQGQCEPPDDNAWFRRMADAGIDTLGMH 60 MVMTTGTPNATDRGA +LCESAF +K+AV+LPIQGQCEPPDD+ WF RM AGIDTLGMH Sbjct: 165 MVMTTGTPNATDRGAAILCESAFAIKAAVDLPIQGQCEPPDDDQWFHRMKAAGIDTLGMH 224 Query: 61 LEAVTPEVRKRIMPGKATVPVERYMEAFAAAVEVFGRGQVSTYILAGLGDSDEAILKMSE 120 LE VTPEVR+RIMPGKA+VPV RYM AF AAV VFGRGQVSTYILAGLGD+ EAIL + Sbjct: 225 LEVVTPEVRERIMPGKASVPVSRYMSAFEAAVRVFGRGQVSTYILAGLGDTREAILDTCD 284 Query: 121 QLIALGVYPFVVPFVPISGTPLEDHPSPDALAMRRLLAPLAAMLEHAGMRSGDAKAGCGK 180 QL+A GVYPFVVPFVPISGTPLEDHP+P M+ LLAPL + AG+RS D KAGCGK Sbjct: 285 QLLARGVYPFVVPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGLRSADIKAGCGK 344 Query: 181 CGACSSLSSFERK 193 CGACSSLS +E++ Sbjct: 345 CGACSSLSIYEKE 357 >ref|ZP_08506841.1| Radical SAM domain protein [Methyloversatilis universalis FAM5] gb|EGK69968.1| Radical SAM domain protein [Methyloversatilis universalis FAM5] Length = 387 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 150/192 (78%), Positives = 167/192 (86%) Query: 1 MVMTTGTPNATDRGAQLLCESAFGVKSAVNLPIQGQCEPPDDNAWFRRMADAGIDTLGMH 60 MVMTTGTP DRGAQ+LC+SAF V++AV+LPIQGQCEPPDD+ WF RM AGIDTLGMH Sbjct: 188 MVMTTGTPATPDRGAQVLCDSAFAVRAAVDLPIQGQCEPPDDDRWFARMKAAGIDTLGMH 247 Query: 61 LEAVTPEVRKRIMPGKATVPVERYMEAFAAAVEVFGRGQVSTYILAGLGDSDEAILKMSE 120 LE VTP +R++IMPGKATVP+ RYMEAFAAAVEVFGRGQVS+YILAGLGD+ +AIL MS Sbjct: 248 LEVVTPALREQIMPGKATVPLARYMEAFAAAVEVFGRGQVSSYILAGLGDTKDAILDMSA 307 Query: 121 QLIALGVYPFVVPFVPISGTPLEDHPSPDALAMRRLLAPLAAMLEHAGMRSGDAKAGCGK 180 QLIALGVYPFVVPFVPISGTPLEDHP+P MR +LAPL M+ AG+RS D KAGCGK Sbjct: 308 QLIALGVYPFVVPFVPISGTPLEDHPAPSPEFMRSILAPLGEMVSAAGLRSADIKAGCGK 367 Query: 181 CGACSSLSSFER 192 CGACSSLSSFER Sbjct: 368 CGACSSLSSFER 379 >ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EPS] gb|ADU34817.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 356 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 146/191 (76%), Positives = 161/191 (84%) Query: 1 MVMTTGTPNATDRGAQLLCESAFGVKSAVNLPIQGQCEPPDDNAWFRRMADAGIDTLGMH 60 MVMTTGTPNATDRGA +LCESAF +K+AV++PIQGQCEPPDD+ WF RM AGIDTLGMH Sbjct: 165 MVMTTGTPNATDRGAAILCESAFAIKAAVDIPIQGQCEPPDDDQWFHRMKAAGIDTLGMH 224 Query: 61 LEAVTPEVRKRIMPGKATVPVERYMEAFAAAVEVFGRGQVSTYILAGLGDSDEAILKMSE 120 LE VTPEVR RIMPGKA+VPV RYM AF AAV VFGRGQVSTYILAGLGD+ EAIL + Sbjct: 225 LEVVTPEVRDRIMPGKASVPVSRYMSAFEAAVGVFGRGQVSTYILAGLGDTREAILDTCD 284 Query: 121 QLIALGVYPFVVPFVPISGTPLEDHPSPDALAMRRLLAPLAAMLEHAGMRSGDAKAGCGK 180 QL+A GVYPFVVPFVPISGTPLEDHP+P M+ LLAPL + AG+RS D KAGCGK Sbjct: 285 QLLARGVYPFVVPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGLRSADIKAGCGK 344 Query: 181 CGACSSLSSFE 191 CGACSSLS +E Sbjct: 345 CGACSSLSVYE 355 >ref|YP_002967231.1| putative oxidoreductase [Methylobacterium extorquens AM1] gb|ACS43890.1| Putative oxidoreductase [Methylobacterium extorquens AM1] Length = 377 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 146/192 (76%), Positives = 165/192 (85%) Query: 1 MVMTTGTPNATDRGAQLLCESAFGVKSAVNLPIQGQCEPPDDNAWFRRMADAGIDTLGMH 60 MVMTTGTPNATDRGA +LCESAF VK+AV+LPIQ QCEPPDD+ WF RM +GID LGMH Sbjct: 181 MVMTTGTPNATDRGAAVLCESAFAVKAAVDLPIQAQCEPPDDDRWFERMKASGIDALGMH 240 Query: 61 LEAVTPEVRKRIMPGKATVPVERYMEAFAAAVEVFGRGQVSTYILAGLGDSDEAILKMSE 120 LEAVTPEVR RIMPGKA+VP+ERY EAFAAAV VFGRGQVSTYILAGLGD+ EAIL+M+E Sbjct: 241 LEAVTPEVRARIMPGKASVPLERYYEAFAAAVPVFGRGQVSTYILAGLGDTPEAILEMAE 300 Query: 121 QLIALGVYPFVVPFVPISGTPLEDHPSPDALAMRRLLAPLAAMLEHAGMRSGDAKAGCGK 180 +L+ LGVYPFVVPFVPISGTPLE HP+P M +L PLA ML A +RS D KAGCG+ Sbjct: 301 RLVGLGVYPFVVPFVPISGTPLESHPAPGPDFMHAVLKPLADMLAQANLRSTDIKAGCGR 360 Query: 181 CGACSSLSSFER 192 CGACS+LS++ER Sbjct: 361 CGACSALSTYER 372