BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2623.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775105.1| glycine/D-amino acid oxidase [Herbaspirillum... 703 0.0 ref|YP_004754870.1| D-amino acid dehydrogenase small subunit [Co... 594 e-167 gb|EGD02222.1| D-amino acid dehydrogenase small subunit [Burkhol... 582 e-164 ref|ZP_03574318.1| D-amino acid dehydrogenase 1 small subunit [B... 578 e-163 ref|ZP_04939295.1| D-amino-acid dehydrogenase [Burkholderia ceno... 578 e-163 >ref|YP_003775105.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ63197.1| glycine/D-amino acid oxidase (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 360/383 (93%), Positives = 368/383 (96%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI Sbjct: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNAESYAVNKERMVRLAEYSRDCLR 120 PLKAIKWMFQEHAPLAIR DG+ NQLRWMWQMLRNCNAE YAVNKERMVRLAEYSRDCLR Sbjct: 61 PLKAIKWMFQEHAPLAIRLDGSFNQLRWMWQMLRNCNAERYAVNKERMVRLAEYSRDCLR 120 Query: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLDGAAKDIAVLQEAGVPFELLTPEQLGGAEPALE 180 DLRADVGIPYEGRQQGTLQLFRSQEQL+GAAKDIAVL+EAGVPFELLTP+QLG AEPAL Sbjct: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLEGAAKDIAVLKEAGVPFELLTPDQLGNAEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYGVSIDALTMAGGKIAGVVCG 240 KVR KLTGGLRLPNDETGDCQLFTTRLA MAEQ+GVKFRYGV IDAL MAGGKIAGVVCG Sbjct: 181 KVRDKLTGGLRLPNDETGDCQLFTTRLATMAEQIGVKFRYGVDIDALAMAGGKIAGVVCG 240 Query: 241 KELVQADSYVVALGSYSPQLLRDIPGLPGIPVYPLKGYSITVPITDASAAPVSTILDETY 300 KELVQADSYVVALGSYSPQLL ++PGLP IPVYPLKGYSITVPITDASAAPVSTILDETY Sbjct: 241 KELVQADSYVVALGSYSPQLLGEVPGLPAIPVYPLKGYSITVPITDASAAPVSTILDETY 300 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTKQASFWTGLRPM 360 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDT QASFWTGLRPM Sbjct: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTAQASFWTGLRPM 360 Query: 361 TPDGTPVVGATPVSNLYIHAWCG 383 TPDGTPVVGATPVSNLYI+ G Sbjct: 361 TPDGTPVVGATPVSNLYINTGHG 383 >ref|YP_004754870.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK64047.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 428 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 296/383 (77%), Positives = 333/383 (86%), Gaps = 3/383 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRV+ILGSGV+GVTSA+YLARAGH+VTV+DR PGPA +TSF NAGQISPGYASPWAAPGI Sbjct: 1 MRVLILGSGVVGVTSAYYLARAGHEVTVIDRLPGPAQDTSFANAGQISPGYASPWAAPGI 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNAESYAVNKERMVRLAEYSRDCLR 120 PLKA+KWM QEHAPL+I PDGTL QLRWMWQMLRNC+A YAVNKERMVRLAEYSRDC + Sbjct: 61 PLKALKWMLQEHAPLSITPDGTLFQLRWMWQMLRNCSAARYAVNKERMVRLAEYSRDCFK 120 Query: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLDGAAKDIAVLQEAGVPFELLTPEQLGGAEPALE 180 LRAD GI YEGRQ GT+Q+FRSQ+QLD AAKDI VLQ+ GVPFELLTP+QL AEPAL+ Sbjct: 121 VLRADTGIAYEGRQLGTMQVFRSQQQLDDAAKDIQVLQDTGVPFELLTPDQLALAEPALD 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYGVSIDALTMAGGKIAGVVCG 240 V+ KL+G LRLPNDETGDCQ+FTTRLAKMAE+LGV+FRY + IDALT+A G+IAGV CG Sbjct: 181 AVKHKLSGALRLPNDETGDCQMFTTRLAKMAEELGVRFRYNLQIDALTLANGEIAGVQCG 240 Query: 241 KELVQADSYVVALGSYSPQLLRDIPGLPGIPVYPLKGYSITVPITDASAAPVSTILDETY 300 E +QAD YVVALG+YS L L IPVYPLKGYSITVPI DA AAPVST+LDETY Sbjct: 241 PEHLQADRYVVALGAYSTGFL---GSLVDIPVYPLKGYSITVPIVDAEAAPVSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTKQASFWTGLRPM 360 KIA+TRFDDRIRVGGMAEIVG++ LK KRRATLE+VVNDLFPGAG+T ASFWTGLRPM Sbjct: 298 KIAITRFDDRIRVGGMAEIVGFNKTLKPKRRATLEMVVNDLFPGAGNTAAASFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLYIHAWCG 383 TPDGTP+VGAT + NL+++ G Sbjct: 358 TPDGTPIVGATHIRNLFLNTGHG 380 >gb|EGD02222.1| D-amino acid dehydrogenase small subunit [Burkholderia sp. TJI49] Length = 428 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 294/383 (76%), Positives = 327/383 (85%), Gaps = 3/383 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SA+YLARAGH+VTV+DR+ GPALETSF NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALETSFANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNAESYAVNKERMVRLAEYSRDCLR 120 PLKA+KWMF++HAPLAIR DGT QL+WMWQMLRNC AE YAVNK RMVRLAEYSRDCL+ Sbjct: 61 PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTAERYAVNKGRMVRLAEYSRDCLQ 120 Query: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLDGAAKDIAVLQEAGVPFELLTPEQLGGAEPALE 180 LRAD GI YEGR GTLQLFR+Q+QLDGAAKDIAVLQEA VPFELL+P +L AEPAL Sbjct: 121 ALRADTGIQYEGRTGGTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKNAEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYGVSIDALTMAGGKIAGVVCG 240 V KLTGGLRLP DETGDCQLFTTRLA +AE LGVKFRY IDAL +AGG+IAGV CG Sbjct: 181 AVSHKLTGGLRLPGDETGDCQLFTTRLAALAESLGVKFRYNTPIDALAIAGGRIAGVQCG 240 Query: 241 KELVQADSYVVALGSYSPQLLRDIPGLPGIPVYPLKGYSITVPITDASAAPVSTILDETY 300 E V+AD+YVVALGSYS I L IPVYPLKGYSIT PI DA+AAPVST+LDETY Sbjct: 241 SETVRADAYVVALGSYSTNF---IANLMKIPVYPLKGYSITAPIVDAAAAPVSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTKQASFWTGLRPM 360 KIA+TRFD RIRVGGMAEIVG+D L+A RR TLE+ VNDLFPG GDT +A+FWTGLRPM Sbjct: 298 KIAITRFDQRIRVGGMAEIVGFDKNLRAARRETLEMCVNDLFPGGGDTSKATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLYIHAWCG 383 TPDGTP+VG TPVSNL+++ G Sbjct: 358 TPDGTPIVGRTPVSNLFLNTGHG 380 >ref|ZP_03574318.1| D-amino acid dehydrogenase 1 small subunit [Burkholderia multivorans CGD2M] ref|ZP_03579281.1| D-amino acid dehydrogenase 1 small subunit [Burkholderia multivorans CGD2] gb|EEE06011.1| D-amino acid dehydrogenase 1 small subunit [Burkholderia multivorans CGD2] gb|EEE11535.1| D-amino acid dehydrogenase 1 small subunit [Burkholderia multivorans CGD2M] Length = 428 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 291/383 (75%), Positives = 325/383 (84%), Gaps = 3/383 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SA+YLARAGH+VTV+DR+ GPALETSF NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALETSFANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNAESYAVNKERMVRLAEYSRDCLR 120 PLKA+KWMF++HAPLAIR DGT QL+WMWQMLRNC AE YAVNK RMVRLAEYSRDCL+ Sbjct: 61 PLKAVKWMFEKHAPLAIRLDGTRFQLQWMWQMLRNCTAERYAVNKSRMVRLAEYSRDCLQ 120 Query: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLDGAAKDIAVLQEAGVPFELLTPEQLGGAEPALE 180 LRAD GI YEGR GTLQLFR+Q+QLDGAAKDIAVL+EA VPFELL+P +L AEPAL Sbjct: 121 ALRADTGIQYEGRTGGTLQLFRTQQQLDGAAKDIAVLREANVPFELLSPAELKNAEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYGVSIDALTMAGGKIAGVVCG 240 V KLTGGLRLP DETGDCQLFTTRLA +AE LGVKFRY ID L +AGGKIAGV CG Sbjct: 181 AVSHKLTGGLRLPGDETGDCQLFTTRLAALAESLGVKFRYNTPIDGLAIAGGKIAGVQCG 240 Query: 241 KELVQADSYVVALGSYSPQLLRDIPGLPGIPVYPLKGYSITVPITDASAAPVSTILDETY 300 E V+AD+YVVALGSYS + L IPVYPLKGYSIT PI D +AAPVST+LDETY Sbjct: 241 SETVRADAYVVALGSYSTNF---VANLMKIPVYPLKGYSITAPIVDEAAAPVSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTKQASFWTGLRPM 360 KIA+TRFD RIRVGGMAEIVG+D L+A RR TLE+ VNDLFPG GDT +A+FWTGLRPM Sbjct: 298 KIAITRFDQRIRVGGMAEIVGFDKTLRAARRETLEMCVNDLFPGGGDTSKATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLYIHAWCG 383 TPDGTP+VG TPVSNL+++ G Sbjct: 358 TPDGTPIVGRTPVSNLFLNTGHG 380 >ref|ZP_04939295.1| D-amino-acid dehydrogenase [Burkholderia cenocepacia PC184] gb|EAY62466.1| D-amino-acid dehydrogenase [Burkholderia cenocepacia PC184] Length = 428 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 297/392 (75%), Positives = 329/392 (83%), Gaps = 6/392 (1%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SA+YLARAGH+VTV+DR+ GPALETSF NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAYYLARAGHEVTVIDREAGPALETSFANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNAESYAVNKERMVRLAEYSRDCLR 120 PLKA+KWMF++HAPLAIR DGT QL+WM QMLRNC AE YAVNK RMVRLAEYSRDCL+ Sbjct: 61 PLKAVKWMFEKHAPLAIRLDGTRFQLQWMVQMLRNCTAERYAVNKGRMVRLAEYSRDCLQ 120 Query: 121 DLRADVGIPYEGRQQGTLQLFRSQEQLDGAAKDIAVLQEAGVPFELLTPEQLGGAEPALE 180 LRAD GI YEGR GTLQLFR+Q+QLDGAAKDIAVLQEA VPFELL+P +L AEPAL Sbjct: 121 ALRADTGIQYEGRTGGTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKQAEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYGVSIDALTMAGGKIAGVVCG 240 V KLTGGLRLP DETGDCQLFTTRLA +AE LGVKFRY IDAL +AGGKIAGV CG Sbjct: 181 AVSHKLTGGLRLPGDETGDCQLFTTRLAALAESLGVKFRYNTPIDALAIAGGKIAGVQCG 240 Query: 241 KELVQADSYVVALGSYSPQLLRDIPGLPGIPVYPLKGYSITVPITDASAAPVSTILDETY 300 E V+AD+YVVALGSYS I L IPVYPLKGYSIT PI DA+AAPVST+LDETY Sbjct: 241 NETVRADAYVVALGSYSTNF---ISNLMKIPVYPLKGYSITAPIVDAAAAPVSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALKAKRRATLELVVNDLFPGAGDTKQASFWTGLRPM 360 KIA+TRFD RIRVGGMAEIVG+D L+A RR TLE+ VNDLFPG GDT +A+FWTGLRPM Sbjct: 298 KIAITRFDQRIRVGGMAEIVGFDKTLRAARRETLEMCVNDLFPGGGDTSKATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLYI---HAWCGRPPATG 389 TPDGTP+VG TPVSNL++ H GR + G Sbjct: 358 TPDGTPIVGRTPVSNLFLNTGHGTLGRTMSCG 389