BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2622.p         (231 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EP...   212   3e-53
ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S1...   212   3e-53
ref|YP_001022665.1| hypothetical protein Mpe_A3477 [Methylibium ...   206   2e-51
ref|YP_004348431.1| radical SAM domain protein [Burkholderia gla...   202   4e-50
ref|YP_003911001.1| Radical SAM domain-containing protein [Burkh...   202   4e-50

>ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EPS]
 gb|ADU34817.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 356

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/140 (71%), Positives = 120/140 (85%)

Query: 50  ISELQSLGLRLDDPAAGAQSRRGGAGPSDHKAVTVDGHTVMIPVHTAGAWSSPYVATQPG 109
           ++ELQS GLRL DP+AG  SRRGGAGPSDHKAVTVDGHT+M+PVHT+ AW SP+ A  P 
Sbjct: 1   MTELQSFGLRLVDPSAGVASRRGGAGPSDHKAVTVDGHTIMVPVHTSTAWHSPFTAEAPD 60

Query: 110 ADGAARILRDGVEVGVVSFPHQPRFYKMQTFDGIPYGKIATLHGADVLATTILQSCIRYE 169
           A+G +R++R  + +  +SFP QPRFY MQTFDG+PY  IATLHG+DVLATT+LQ+CIRYE
Sbjct: 61  AEGMSRVMRGSIPIASISFPKQPRFYAMQTFDGVPYSHIATLHGSDVLATTVLQTCIRYE 120

Query: 170 SRRKSCQFCAIGQSLAAGRT 189
           SR+KSC+FCAIGQSLAAGRT
Sbjct: 121 SRKKSCKFCAIGQSLAAGRT 140


>ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S110]
 gb|ACS17223.1| Radical SAM domain protein [Variovorax paradoxus S110]
          Length = 360

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/140 (72%), Positives = 119/140 (85%)

Query: 50  ISELQSLGLRLDDPAAGAQSRRGGAGPSDHKAVTVDGHTVMIPVHTAGAWSSPYVATQPG 109
           ++ELQS GLRL DP+AG  SRRGGAGPSDHKAVTVDGHT+M+PVHT+ AW SP+ A  P 
Sbjct: 1   MTELQSFGLRLVDPSAGVASRRGGAGPSDHKAVTVDGHTIMVPVHTSSAWHSPFTAEAPD 60

Query: 110 ADGAARILRDGVEVGVVSFPHQPRFYKMQTFDGIPYGKIATLHGADVLATTILQSCIRYE 169
           A G +R++R  + +  +SFP QPRFY MQTFDG+PY  IATLHG+DVLATT+LQSCIRYE
Sbjct: 61  ARGVSRVMRGSIPIASISFPKQPRFYAMQTFDGVPYSHIATLHGSDVLATTVLQSCIRYE 120

Query: 170 SRRKSCQFCAIGQSLAAGRT 189
           SR+KSC+FCAIGQSLAAGRT
Sbjct: 121 SRKKSCKFCAIGQSLAAGRT 140


>ref|YP_001022665.1| hypothetical protein Mpe_A3477 [Methylibium petroleiphilum PM1]
 gb|ABM96430.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 359

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/143 (70%), Positives = 119/143 (83%), Gaps = 3/143 (2%)

Query: 50  ISELQSLGLRLDDPA---AGAQSRRGGAGPSDHKAVTVDGHTVMIPVHTAGAWSSPYVAT 106
           ++ELQS GLRL DP    AG  SRRGGAGPSDHKAVTVDGHT+M+PVHT GAW+SP+VA 
Sbjct: 1   MTELQSFGLRLADPGSPNAGVASRRGGAGPSDHKAVTVDGHTIMVPVHTHGAWASPFVAE 60

Query: 107 QPGADGAARILRDGVEVGVVSFPHQPRFYKMQTFDGIPYGKIATLHGADVLATTILQSCI 166
            P ADG +R+ R  + +  V+FP  PRFY +QTFDG+PY  IATLHG+DVLATT+LQ+CI
Sbjct: 61  APDADGTSRLTRGSIPIARVAFPKAPRFYALQTFDGVPYSHIATLHGSDVLATTVLQTCI 120

Query: 167 RYESRRKSCQFCAIGQSLAAGRT 189
           RYESRRK+C+FCAIGQSLAAGRT
Sbjct: 121 RYESRRKTCKFCAIGQSLAAGRT 143


>ref|YP_004348431.1| radical SAM domain protein [Burkholderia gladioli BSR3]
 gb|AEA62919.1| radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 357

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 101/141 (71%), Positives = 117/141 (82%)

Query: 49  LISELQSLGLRLDDPAAGAQSRRGGAGPSDHKAVTVDGHTVMIPVHTAGAWSSPYVATQP 108
           +I+ELQS+GLRL DP AG  SRRGGAGPSDHKAVTVDG TVM+PVHT+ AW SPYVA  P
Sbjct: 1   MITELQSVGLRLVDPKAGVASRRGGAGPSDHKAVTVDGVTVMVPVHTSTAWDSPYVAGAP 60

Query: 109 GADGAARILRDGVEVGVVSFPHQPRFYKMQTFDGIPYGKIATLHGADVLATTILQSCIRY 168
            A GA+ + R  + +  + FP QPRFY +QT DG+PY +IATLHGADVLATT+LQ+CIRY
Sbjct: 61  DALGASTLTRGSIPIAEIRFPAQPRFYALQTLDGVPYSQIATLHGADVLATTVLQTCIRY 120

Query: 169 ESRRKSCQFCAIGQSLAAGRT 189
           ESRRK CQFC+IGQSLAAGRT
Sbjct: 121 ESRRKMCQFCSIGQSLAAGRT 141


>ref|YP_003911001.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
 gb|ADN61710.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
          Length = 377

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 101/159 (63%), Positives = 125/159 (78%), Gaps = 1/159 (0%)

Query: 32  AVIQLHPQRP-SRKAAVELISELQSLGLRLDDPAAGAQSRRGGAGPSDHKAVTVDGHTVM 90
           A + L P  P +++   EL +ELQS+GLRL DP AGA SRRGGAGPSDHKAVTVDG T+M
Sbjct: 3   ANMSLSPAEPRTQRQMTELRTELQSVGLRLVDPNAGAASRRGGAGPSDHKAVTVDGVTIM 62

Query: 91  IPVHTAGAWSSPYVATQPGADGAARILRDGVEVGVVSFPHQPRFYKMQTFDGIPYGKIAT 150
           +PVHT+ AW+SP++A  P   GA+ +LR  + +  +SFP  PRF K+QT DG+PY  IAT
Sbjct: 63  VPVHTSSAWNSPFIAGAPDESGASALLRGTIPIASISFPSAPRFTKLQTLDGVPYSHIAT 122

Query: 151 LHGADVLATTILQSCIRYESRRKSCQFCAIGQSLAAGRT 189
           LH  DVLATT+LQ+CIRYESR+K+C+FCAIGQSLAAGRT
Sbjct: 123 LHSTDVLATTVLQTCIRYESRKKTCKFCAIGQSLAAGRT 161