BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2619.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002967234.1| putative HTH-type transcriptional regulator ... 437 e-120 ref|YP_001922785.1| GntR family transcriptional regulator [Methy... 436 e-120 ref|YP_003695600.1| GntR family transcriptional regulator with a... 435 e-120 ref|YP_002362294.1| GntR family transcriptional regulator [Methy... 431 e-118 ref|YP_002961487.1| transcriptional regulator [methylobacterium ... 429 e-118 >ref|YP_002967234.1| putative HTH-type transcriptional regulator [Methylobacterium extorquens AM1] gb|ACS43893.1| Putative HTH-type transcriptional regulator [Methylobacterium extorquens AM1] Length = 465 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 230/460 (50%), Positives = 308/460 (66%), Gaps = 12/460 (2%) Query: 8 WVPKLKKGGGPLYLAIANAIAEDVATGHLQPEQRLPPQRKLAELLDLDFTTVARAYTEAH 67 W P LK+ G P YLAIA A+A+D+ TG L P RLP QR LAE LDL+FTTV+R Y EAH Sbjct: 5 WTPDLKRWGKPHYLAIAEALADDIRTGRLTPGTRLPTQRALAEALDLNFTTVSRGYVEAH 64 Query: 68 RRGLVDSVVGRGTFVCGKRRP--------RIPRVTEGRPNVDMSMNMPPEPESPELMELM 119 +RGL++ VG+GTFV R PRV VD +MN+PPEP++P L M Sbjct: 65 KRGLIEGRVGQGTFVVDPARRAASGDGAGSAPRVGP----VDFTMNLPPEPDAPALRARM 120 Query: 120 QAGWNKVNGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAIL 179 QA + +++G L +L+RYQ FGG+ ED+EA WL+ RG+ +RLL+ PGA AL ++L Sbjct: 121 QASFAELSGDLANLLRYQGFGGTDEDKEAALRWLKGRGIDTTRERLLICPGAHSALFSVL 180 Query: 180 TMLVGPGGVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVAFAGACAQYAPKALYC 239 + PG +C E +TYPG+RALA HL ++LV LPMD G+D AFA AC + APKA+Y Sbjct: 181 GQVARPGDAICAERITYPGIRALAAHLGLRLVDLPMDRHGVDPDAFAAACTKVAPKAIYL 240 Query: 240 NPTLLNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAPPAIASIGSELTYYVT 299 NP L NPTT T S +RR+A++ +AR Y V+IIEDDAY + A PP+ A + E+TYYV Sbjct: 241 NPLLQNPTTATLSRTRREAIIAVARRYAVSIIEDDAYARICPAPPPSFAELAPEITYYVA 300 Query: 300 GLAKSVGAGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLATHWIRDGVADLALAN 359 G+AK +GAGLR+A++VAP A +A L ALRA TVMASP+++ L T WI DG AD + Sbjct: 301 GVAKCLGAGLRLAFLVAPSARSALPLAGALRAATVMASPISTALTTRWIMDGTADAIVQF 360 Query: 360 IRKESMARQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSAQMRSNGVAVVGVDAF 419 +R+ES ARQ IVA +LP +Y ++ FH+W+ LP GW S+F++Q RS G+ VVG D F Sbjct: 361 VREESAARQHIVASLLPAETYTADPHGFHVWITLPEGWTRSAFASQGRSAGLGVVGSDPF 420 Query: 420 SVTAAPLQAVRVCIGGIASRSDLQHALGLIRSTLAEQPLI 459 V P +AVR+C+GG ++R + H L ++ L P + Sbjct: 421 CVAGTPPEAVRLCLGGPSTRQQITHGLEVLAHALEGSPAL 460 >ref|YP_001922785.1| GntR family transcriptional regulator [Methylobacterium populi BJ001] gb|ACB78250.1| transcriptional regulator, GntR family with aminotransferase domain [Methylobacterium populi BJ001] Length = 479 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 230/458 (50%), Positives = 304/458 (66%), Gaps = 3/458 (0%) Query: 5 SSVWVPKLKKGGGPLYLAIANAIAEDVATGHLQPEQRLPPQRKLAELLDLDFTTVARAYT 64 S W P LK+ G P YLAIA A+A+D+ TG L P RLP QR LAE LDL+FTTV+R Y Sbjct: 17 SGAWRPDLKRWGKPHYLAIAEALADDIRTGRLTPGTRLPTQRALAEALDLNFTTVSRGYV 76 Query: 65 EAHRRGLVDSVVGRGTFVCGKRRPRIPRVTEGRPN---VDMSMNMPPEPESPELMELMQA 121 AH+RGL++ VG+GTFV R P T G VD +MN+PPEP++P L MQA Sbjct: 77 AAHKRGLIEGRVGQGTFVVDPARSSRPGSTAGAARIGPVDFTMNLPPEPDAPALRARMQA 136 Query: 122 GWNKVNGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTM 181 ++G L +L+RYQ FGG+ ED+EA WL+ RG+ +RLL+ PGA AL ++L Sbjct: 137 SLADLSGDLINLLRYQGFGGTDEDKEAALRWLKGRGIDTTRERLLICPGAHSALFSVLGQ 196 Query: 182 LVGPGGVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNP 241 + PG +C E +TYPG+RALA HL ++LV LPMD G+D AFA C + AP+A+Y NP Sbjct: 197 VARPGDTICAERITYPGIRALAAHLGLRLVDLPMDCYGVDPDAFAAVCTKVAPRAIYLNP 256 Query: 242 TLLNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAPPAIASIGSELTYYVTGL 301 L NPTT T SLSRRQA++ +AR Y V+IIEDDAY L A PP+ A + E+TYYV GL Sbjct: 257 LLQNPTTATLSLSRRQAVIAVARRYAVSIIEDDAYARLCPAPPPSFAELAPEITYYVAGL 316 Query: 302 AKSVGAGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLATHWIRDGVADLALANIR 361 AK +GAGLR+A++VAP A + L ALR TVMASP+ + LAT WI DG AD + +R Sbjct: 317 AKCLGAGLRLAFLVAPSARSVLPLAGALRTATVMASPIATALATRWIMDGTADAVVQFVR 376 Query: 362 KESMARQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSAQMRSNGVAVVGVDAFSV 421 +ES ARQ+I A +LP +Y ++ FH+W+ LP GW ++F++Q RS G+ VVG D F V Sbjct: 377 EESAARQRIAASLLPAGTYTADPHGFHVWITLPEGWTRAAFASQGRSAGLGVVGSDPFCV 436 Query: 422 TAAPLQAVRVCIGGIASRSDLQHALGLIRSTLAEQPLI 459 P +AVR+C+GG ++R + H L ++ L P + Sbjct: 437 AGTPPEAVRLCLGGPSTRQQITHGLEVLAHALEGSPAL 474 >ref|YP_003695600.1| GntR family transcriptional regulator with aminotransferase domain-containing protein [Starkeya novella DSM 506] gb|ADH90981.1| transcriptional regulator, GntR family with aminotransferase domain protein [Starkeya novella DSM 506] Length = 461 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 242/458 (52%), Positives = 308/458 (67%), Gaps = 1/458 (0%) Query: 8 WVPKLKKGGGPLYLAIANAIAEDVATGHLQPEQRLPPQRKLAELLDLDFTTVARAYTEAH 67 W+P L + P YLAIA+ IAED+ G L RLPPQRKLA LD+DFTTVAR Y EA Sbjct: 4 WIPDLSRSDKPRYLAIADLIAEDIRAGKLAIGDRLPPQRKLATRLDIDFTTVARGYVEAQ 63 Query: 68 RRGLVDSVVGRGTFVCGKRRPRIPRVTEGRP-NVDMSMNMPPEPESPELMELMQAGWNKV 126 +RGLV+S VG+GTFV G RP+ + RP VD+SMN+PPEP+ P L+E MQ G +V Sbjct: 64 KRGLVESRVGQGTFVTGSPRPKTRTASAARPGTVDLSMNLPPEPDDPVLIERMQDGLAEV 123 Query: 127 NGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVGPG 186 L L+RYQ FGG+ D++A + WL RR LV +R+ VTPGA ALL IL +L G Sbjct: 124 ARDLVALLRYQGFGGTPADKDAASAWLGRRALVPAQERVFVTPGAHPALLGILGLLAKAG 183 Query: 187 GVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLLNP 246 + CE VTYPG RA+A L ++L GLPMD +GID AFA ACA++APKALY NPTL NP Sbjct: 184 DTVLCEAVTYPGARAVAAQLGVRLCGLPMDRDGIDPDAFARACAEHAPKALYLNPTLQNP 243 Query: 247 TTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAPPAIASIGSELTYYVTGLAKSVG 306 TT T +RR A+ +AR + V I+EDDAYGF+P PP +A+I +LT++V GLAK +G Sbjct: 244 TTLTIPEARRTAIAQVARRFGVPIVEDDAYGFIPAHGPPPLAAIAPDLTWHVAGLAKCIG 303 Query: 307 AGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLATHWIRDGVADLALANIRKESMA 366 AGLR AY+V PDA + AALR VMASPLT+ LAT WI DG AD L IR E+MA Sbjct: 304 AGLRAAYVVVPDARSGYPFAAALRTANVMASPLTTALATRWIEDGTADTLLRFIRSETMA 363 Query: 367 RQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSAQMRSNGVAVVGVDAFSVTAAPL 426 RQ++ ILP S+ ++ AF+LW++LP W S+F MRS G+ VV DAF+V + Sbjct: 364 RQQMATDILPAGSFRADPLAFNLWIELPEPWTRSAFVGHMRSTGIGVVASDAFTVAGPAM 423 Query: 427 QAVRVCIGGIASRSDLQHALGLIRSTLAEQPLIKPAVV 464 +AVRVC+GG ASR+ ++ AL + L + P +VV Sbjct: 424 EAVRVCLGGPASRAQIRSALDFMAHALEQSPEAVSSVV 461 >ref|YP_002362294.1| GntR family transcriptional regulator [Methylocella silvestris BL2] gb|ACK50932.1| transcriptional regulator, GntR family with aminotransferase domain [Methylocella silvestris BL2] Length = 461 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 233/451 (51%), Positives = 299/451 (66%), Gaps = 1/451 (0%) Query: 8 WVPKLKKGGGPLYLAIANAIAEDVATGHLQPEQRLPPQRKLAELLDLDFTTVARAYTEAH 67 W P L P YLAIA+ IAED+ +G L RLPPQR+LA L +DFTTVAR Y EA Sbjct: 4 WTPDLTGSDKPRYLAIADLIAEDLRSGRLSIGDRLPPQRQLAARLGVDFTTVARGYVEAK 63 Query: 68 RRGLVDSVVGRGTFVCGKRRPRIPRVTEGRPN-VDMSMNMPPEPESPELMELMQAGWNKV 126 +RGLV+S VGRGTFVC R P R + VD+SMN+PPEP+ P L+ MQ G +V Sbjct: 64 KRGLVESRVGRGTFVCAPPRQAPPPPRPARSDFVDLSMNLPPEPDDPALIARMQDGVAEV 123 Query: 127 NGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVGPG 186 + L L+RYQ FGGS D++A + WL RR LV RL VTPGA ALL I ++L PG Sbjct: 124 SRDLVSLLRYQAFGGSPADKDAASAWLGRRSLVPSQDRLFVTPGAHPALLGIFSILAAPG 183 Query: 187 GVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLLNP 246 V+ CE++TYPG+RA+A L +KLVGLPMD +G+D AF +C PKA+Y NPTL NP Sbjct: 184 DVVLCEELTYPGMRAIAAQLRLKLVGLPMDADGVDPDAFKSSCETLKPKAIYLNPTLHNP 243 Query: 247 TTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAPPAIASIGSELTYYVTGLAKSVG 306 TT T +RR A+ +AR Y V I+EDDAYGF+P P A+I +LT++V GLAK +G Sbjct: 244 TTLTIPATRRVAIAAVARRYNVPIVEDDAYGFIPTQGQPPFAAIAPDLTWHVAGLAKCIG 303 Query: 307 AGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLATHWIRDGVADLALANIRKESMA 366 AGLR AY+VAPDA + AA+RA VMASPLT+ +AT WI DG AD L IR E+ A Sbjct: 304 AGLRAAYVVAPDARSGWPFAAAMRAANVMASPLTAAIATRWIEDGAADTILRFIRAETAA 363 Query: 367 RQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSAQMRSNGVAVVGVDAFSVTAAPL 426 RQ++ A ILP+ S+ S+ +F+LW++LP W S+F M S + VV DAF+V P+ Sbjct: 364 RQQLAADILPKGSFRSDRLSFNLWMELPKPWTRSAFIGHMGSTRIGVVASDAFTVGGDPI 423 Query: 427 QAVRVCIGGIASRSDLQHALGLIRSTLAEQP 457 +A+R+CIGG R +++ AL I LA+ P Sbjct: 424 EAIRICIGGPTGREEIRSALEYIAHALAQSP 454 >ref|YP_002961487.1| transcriptional regulator [methylobacterium extorquens AM1] gb|ACS38210.1| putative HTH-type transcriptional regulator [Methylobacterium extorquens AM1] Length = 464 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 225/455 (49%), Positives = 303/455 (66%), Gaps = 3/455 (0%) Query: 8 WVPKLKKGGGPLYLAIANAIAEDVATGHLQPEQRLPPQRKLAELLDLDFTTVARAYTEAH 67 W P LK+ G P YLAIA A+AED+ TG L RLP QR LAE LDL+FTTV+R Y EAH Sbjct: 5 WTPDLKRWGKPHYLAIAEALAEDIRTGRLTFGTRLPTQRALAEALDLNFTTVSRGYVEAH 64 Query: 68 RRGLVDSVVGRGTFVCGKRRPRIPRVTEGRPNV---DMSMNMPPEPESPELMELMQAGWN 124 +RGL++ VG+GTFV R G P V D +MN+PPEP++P L MQA + Sbjct: 65 KRGLIEGRVGQGTFVVDPARSARAGAAAGVPQVGPVDFTMNLPPEPDAPALRARMQASFA 124 Query: 125 KVNGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVG 184 +++G L +L+RYQ FGG+ +D+EA WL+ RG+ +R+L+ PGA AL ++L + Sbjct: 125 ELSGNLANLLRYQGFGGTDDDKEAALRWLKGRGIETTRERVLICPGAHSALFSVLGQIAR 184 Query: 185 PGGVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLL 244 G +C E +TYPG+RALA HL ++LV LPMD GID AFA AC + APKA+Y NP L Sbjct: 185 SGDTICAERITYPGIRALAAHLGLRLVELPMDRHGIDPDAFAAACTKVAPKAIYLNPLLQ 244 Query: 245 NPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAPPAIASIGSELTYYVTGLAKS 304 NPTT T S +RR+A++ +AR Y V IIEDDAY + A PP+ A + E+TYYV G+AK Sbjct: 245 NPTTATLSRTRREAIIAVARRYAVTIIEDDAYARICPAPPPSFAELAPEVTYYVAGVAKC 304 Query: 305 VGAGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLATHWIRDGVADLALANIRKES 364 +GAGLR+A++VAP A +A L ALRA TVMASP+++ L T WI DG AD + +R+ES Sbjct: 305 LGAGLRLAFLVAPSARSALPLAGALRAATVMASPISTALTTRWIMDGTADAIVQFVREES 364 Query: 365 MARQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSAQMRSNGVAVVGVDAFSVTAA 424 ARQ+IV +LP +Y ++ FH+W+ LP GW S+F++Q RS G+ VVG D F V Sbjct: 365 AARQRIVTSLLPAGTYTADPHGFHVWITLPEGWTRSAFASQGRSAGLGVVGSDPFCVAGT 424 Query: 425 PLQAVRVCIGGIASRSDLQHALGLIRSTLAEQPLI 459 P +A R+C+GG ++R + H L ++ L P + Sbjct: 425 PPEAARLCLGGPSTRQQITHGLEVLAHALEGSPAL 459