BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2618.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774399.1| HD-GYP domain metal-dependent phosphohydrola... 712 0.0 ref|YP_003777374.1| HD-GYP domain-containing protein [Herbaspiri... 507 e-141 ref|YP_003774371.1| HD-GYP domain-containing protein [Herbaspiri... 458 e-127 gb|EGW62604.1| metal dependent phosphohydrolase [Dechlorosoma su... 388 e-105 ref|YP_283416.1| HDIG [Dechloromonas aromatica RCB] >gi|71845450... 385 e-105 >ref|YP_003774399.1| HD-GYP domain metal-dependent phosphohydrolase [Herbaspirillum seropedicae SmR1] gb|ADJ62491.1| HD-GYP domain metal-dependent phosphohydrolase protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 346/407 (85%), Positives = 372/407 (91%), Gaps = 4/407 (0%) Query: 1 MLKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNEADLRQAHGSGIEHCWIDPERGL 60 MLKKIK EDLVLGMYFCGFEAAWLDHPFWKNKFLLKN+++LRQAH SGI +CWID ERGL Sbjct: 1 MLKKIKVEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNDSELRQAHASGIAYCWIDTERGL 60 Query: 61 DVA---EAAAEAGPDEAAAPAEPSPELPPGPDIDTTLMEAEALRENAKKATKAMFSEARL 117 DVA EAA A P + P+ P PE P ID L++A ALRE AKKATKAMFSEAR+ Sbjct: 61 DVAQEEEAADSAAPLQETEPS-PEPEHAAAPPIDAVLLDAMALRETAKKATKAMFSEARM 119 Query: 118 GKALDMERCVTVVEEIAGAVLQSPNGTLSVLRLKLADEYTYLHSVAVCALMVALGRTLGL 177 GK LDMERCV+VVEEIAG+V++SPNG LSVLRLKLADEYTYLHSVAVCALMVALGRTLGL Sbjct: 120 GKVLDMERCVSVVEEIAGSVIKSPNGALSVLRLKLADEYTYLHSVAVCALMVALGRTLGL 179 Query: 178 DEKACREAGLGGFLHDVGKAFLPHELLNKPGKLTDEEFTQIKKHPELGYKYLSQDPNVPD 237 DE ACREAGLGGFLHDVGKAF+PHELLNKPGKL+DEEF+QIKKHPELGYKYLSQDPNVPD Sbjct: 180 DETACREAGLGGFLHDVGKAFIPHELLNKPGKLSDEEFSQIKKHPELGYKYLSQDPNVPD 239 Query: 238 YARDVCLHHHEKMDGHGYPELLRSGQISLYARMAAICDVYDALTSDRPYKRAWDPAEAIS 297 YARDVCLHHHEK+DG+GYPE LR+G I+LY+RMAAICDVYDALTSDRPYKRAWDPAEAIS Sbjct: 240 YARDVCLHHHEKIDGNGYPEGLRAGAITLYSRMAAICDVYDALTSDRPYKRAWDPAEAIS 299 Query: 298 SMASWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFRYND 357 +MASWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVF Y+D Sbjct: 300 AMASWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFHYDD 359 Query: 358 DMEMSDTEILDLMATPEADTIVARGGEEWARLSHLDTMQLLSTGVPT 404 M ++DTEILDL+A PEADTIVARGGEEWARLSHLD MQLLSTGVPT Sbjct: 360 SMTVTDTEILDLLANPEADTIVARGGEEWARLSHLDAMQLLSTGVPT 406 >ref|YP_003777374.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65466.1| HD-GYP domain protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 253/394 (64%), Positives = 296/394 (75%), Gaps = 3/394 (0%) Query: 1 MLKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNEADLRQAHGSGIEHCWIDPERGL 60 MLKKIK DLVLGMYFCGFEA+WL HPFWK +FLL E+DL+QA SGI +CWID RG Sbjct: 1 MLKKIKVGDLVLGMYFCGFEASWLAHPFWKTRFLLSRESDLQQARASGIAYCWIDVSRGR 60 Query: 61 DVAEAAAEAGPDEAAAPA-EPSPELPPGPDIDTTLMEAEALRENAKKATKAMFSEARLGK 119 DVA AA AA + + S G D D A ALRE+A++ T+ MF+ AR+GK Sbjct: 61 DVAGAAPAKAEAAAAPASPDQSAATHAGADADRA--SAVALREHAREVTRQMFNAARMGK 118 Query: 120 ALDMERCVTVVEEIAGAVLQSPNGTLSVLRLKLADEYTYLHSVAVCALMVALGRTLGLDE 179 +++ +CV +VEEIA +VL+ PNG LSVLRLKL DEYTYLHSV+VCAL++ LGRTLGL E Sbjct: 119 MVELPQCVALVEEIACSVLRDPNGLLSVLRLKLNDEYTYLHSVSVCALVIGLGRTLGLSE 178 Query: 180 KACREAGLGGFLHDVGKAFLPHELLNKPGKLTDEEFTQIKKHPELGYKYLSQDPNVPDYA 239 ACREAGL G+LHDVGKAF+ E+LNKPGKLT EEF IK+HPELGY+YL Q P++P YA Sbjct: 179 AACREAGLSGYLHDVGKAFIDDEILNKPGKLTAEEFALIKRHPELGYQYLIQTPDMPAYA 238 Query: 240 RDVCLHHHEKMDGHGYPELLRSGQISLYARMAAICDVYDALTSDRPYKRAWDPAEAISSM 299 DVC HHHE++DG GYP+ L + I+LYARM A+CDVYDALTS+RPYK WDPAEAIS M Sbjct: 239 SDVCRHHHERLDGRGYPDALPAESITLYARMTAVCDVYDALTSERPYKHGWDPAEAISQM 298 Query: 300 ASWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFRYNDDM 359 A W GHFDR + LAFVKTLGIYPVGS+V+LESG SG VIRQN DLTRPVLKV Sbjct: 299 ARWEGHFDRRLLLAFVKTLGIYPVGSLVRLESGVSGVVIRQNPADLTRPVLKVLHLQGPH 358 Query: 360 EMSDTEILDLMATPEADTIVARGGEEWARLSHLD 393 E + +LDLMA P DTI+ RG EEW RL D Sbjct: 359 ETTIGGVLDLMAWPRTDTIIGRGDEEWTRLRQQD 392 >ref|YP_003774371.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62463.1| HD-GYP domain containing protein [Herbaspirillum seropedicae SmR1] Length = 408 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 212/387 (54%), Positives = 281/387 (72%), Gaps = 6/387 (1%) Query: 2 LKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNEADLRQAHGSGIEHCWIDPERGLD 61 LKKI+ L +GMYF GF+ AW+D PFW+ FL++ +++ +A +G +CWID ++G+D Sbjct: 4 LKKIEVGQLSVGMYFSGFDGAWIDTPFWRTSFLVRKASEIARARAAGYTYCWIDTDQGID 63 Query: 62 VAEAAAEAGPDEAAAPAEPSPELPPGPDIDTTLMEAEALRENAKKATKAMFSEARLGKAL 121 +A A A+ P+ PE + L +A L ENAK+ T+ MF +ARLGK L Sbjct: 64 LAGAEADRLPETE------EPEAAGSSSSRSELDDALRLYENAKQTTQQMFKQARLGKTL 117 Query: 122 DMERCVTVVEEIAGAVLQSPNGTLSVLRLKLADEYTYLHSVAVCALMVALGRTLGLDEKA 181 D+E C ++VEEIA +V + N LS++RLK DEYTYLHS+AVC LMVAL RTLG+D+ A Sbjct: 118 DVENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIA 177 Query: 182 CREAGLGGFLHDVGKAFLPHELLNKPGKLTDEEFTQIKKHPELGYKYLSQDPNVPDYARD 241 C+EAGL G+LHDVGKAF+P E+LNKP +L+++E+ I++HP LGY YL VPDY D Sbjct: 178 CKEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLD 237 Query: 242 VCLHHHEKMDGHGYPELLRSGQISLYARMAAICDVYDALTSDRPYKRAWDPAEAISSMAS 301 VCLHHHEK+DG GYP + QIS+Y+RMAA+CDVYDA+TS+RPYK WDPAE++S MAS Sbjct: 238 VCLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMAS 297 Query: 302 WTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFRYNDDMEM 361 W GHFDR +FLAFVK LGIYP+GSIVKL+SGR+ VIRQN DLT+PV+K F +E+ Sbjct: 298 WQGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEV 357 Query: 362 SDTEILDLMATPEADTIVARGGEEWAR 388 ++EI+DL A + D I R G++W + Sbjct: 358 VESEIIDLSAPGQTDAIAERSGQDWLK 384 >gb|EGW62604.1| metal dependent phosphohydrolase [Dechlorosoma suillum PS] Length = 409 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 205/389 (52%), Positives = 251/389 (64%), Gaps = 8/389 (2%) Query: 1 MLKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNEADLRQAHGSGIEHCWIDPERGL 60 MLKKI E L +GMY F AW+DHPFW+N F+LK+ D+R S I WID +GL Sbjct: 1 MLKKIHVEQLRVGMYLKSFCGAWIDHPFWRNSFVLKDPEDIRAIRASCITEVWIDAGKGL 60 Query: 61 DV--AEAAAEAGPDEAAAPAEPSPELPPGPDIDTTLMEAEALR-----ENAKKATKAMFS 113 DV E A EA E E ++ T E R +AKKA +MF Sbjct: 61 DVEAGEVAISETESEALVAEEQVREAQATRSLERTSTAVEMQRAAKICNSAKKAVVSMFQ 120 Query: 114 EARLGKALDMERCVTVVEEIAGAVLQSPNGTLSVLRLKLADEYTYLHSVAVCALMVALGR 173 EAR+GKA+D E+ +VEEIA +V ++P +S+ RLK AD+YTY+HSVAVCALMVAL R Sbjct: 121 EARMGKAVDAEQAQVLVEEIADSVARNPGALISLARLKTADDYTYMHSVAVCALMVALAR 180 Query: 174 TLGLDEKACREAGLGGFLHDVGKAFLPHELLNKPGKLTDEEFTQIKKHPELGYKYLSQDP 233 LGLDE+ R AGL G LHD+GKAF+P E+LNKPGKLTDEEF IK HP G+K L + Sbjct: 181 QLGLDEQQTRLAGLSGLLHDMGKAFIPAEILNKPGKLTDEEFAVIKTHPAEGHKVLLEGK 240 Query: 234 NVPDYARDVCLHHHEKMDGHGYPELLRSGQISLYARMAAICDVYDALTSDRPYKRAWDPA 293 VP A DVCLHHHEKM+G GYP+ L+ +ISL A+M A+CDVYDA+TS+RPYK WDPA Sbjct: 241 GVPPEALDVCLHHHEKMNGGGYPKGLKGDEISLLAKMGAVCDVYDAITSNRPYKAGWDPA 300 Query: 294 EAISSMASWT-GHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKV 352 E+I MA W GHFD +F AFVK+LGIYP+GS V+LESGR G V+ Q+ + L P +KV Sbjct: 301 ESIKKMAEWADGHFDPRVFQAFVKSLGIYPIGSFVRLESGRLGVVVEQSEKSLLAPRVKV 360 Query: 353 FRYNDDMEMSDTEILDLMATPEADTIVAR 381 F E+LDL D I R Sbjct: 361 FFSTKSNAHIAPELLDLSRPGVHDKIAGR 389 >ref|YP_283416.1| HDIG [Dechloromonas aromatica RCB] gb|AAZ44946.1| HDIG protein [Dechloromonas aromatica RCB] Length = 401 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 190/376 (50%), Positives = 247/376 (65%), Gaps = 2/376 (0%) Query: 1 MLKKIKTEDLVLGMYFCGFEAAWLDHPFWKNKFLLKNEADLRQAHGSGIEHCWIDPERGL 60 MLKKI E L LGM+ F AWLDHPFW+ KF+L + DL S I WID +G Sbjct: 1 MLKKIPVEKLTLGMHLQAFCGAWLDHPFWRTKFVLTDPNDLCLIKESSIREVWIDASKGS 60 Query: 61 DVA--EAAAEAGPDEAAAPAEPSPELPPGPDIDTTLMEAEALRENAKKATKAMFSEARLG 118 DVA E A A EP P + + + A + K+A +MF EAR+G Sbjct: 61 DVATDEVAGTTEIVTAEEIPEPPPVVQEKASFNDEVKRAAKICAKGKEAVVSMFQEARMG 120 Query: 119 KALDMERCVTVVEEIAGAVLQSPNGTLSVLRLKLADEYTYLHSVAVCALMVALGRTLGLD 178 KA++ E +VEEI+ +V+++P +S+ RLK AD+YT++HSVAVCALM+AL R LGLD Sbjct: 121 KAIEAEAAAPLVEEISNSVMRNPGALISLARLKTADDYTFMHSVAVCALMIALARQLGLD 180 Query: 179 EKACREAGLGGFLHDVGKAFLPHELLNKPGKLTDEEFTQIKKHPELGYKYLSQDPNVPDY 238 ++ R+AG+ G LHD+GKA +P E+LNKP KLTDEEF +K HPE GYK L + + + Sbjct: 181 DRQVRDAGMAGLLHDLGKAMIPLEVLNKPSKLTDEEFDLVKTHPEAGYKLLLEGNGISEM 240 Query: 239 ARDVCLHHHEKMDGHGYPELLRSGQISLYARMAAICDVYDALTSDRPYKRAWDPAEAISS 298 +DVCLHHHEK+DG GYP+ L S +SL+A+M A+CDVYDA+TS+RPYK WDPAE+I Sbjct: 241 TKDVCLHHHEKIDGSGYPKGLNSDTMSLFAKMGAVCDVYDAVTSNRPYKAGWDPAESIKR 300 Query: 299 MASWTGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFRYNDD 358 MA W GHFD ++F AFVK+LGIYP+GS V+LESG+ G VI Q Q L +P +KVF Sbjct: 301 MAEWKGHFDPSVFQAFVKSLGIYPIGSFVRLESGKLGVVIEQGEQSLLKPKVKVFFSTKS 360 Query: 359 MEMSDTEILDLMATPE 374 E +DL +PE Sbjct: 361 QAYIRPETIDLARSPE 376