BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2615.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774396.1| integral transmembrane protein [Herbaspirill...   159   1e-37
ref|YP_984716.1| putative integral membrane protein [Acidovorax ...   110   7e-23
ref|ZP_04761569.1| putative integral membrane protein [Acidovora...   105   3e-21
ref|ZP_08274035.1| putative transmembrane protein [Oxalobacterac...   104   4e-21
ref|YP_001890391.1| putative transmembrane protein [Burkholderia...   103   8e-21

>ref|YP_003774396.1| integral transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62488.1| integral transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/94 (95%), Positives = 92/94 (97%)

Query: 1  MGNALSWMSWTPPVAIFFVCVVLMLIGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLT 60
          MGNALSWMSWTPPVAIFFVCVVLML+GMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLT
Sbjct: 1  MGNALSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLT 60

Query: 61 AAYINLAWVGLTDMEQWYAAALGFVALVLIMRKG 94
          AAYINLAWVGLTD +QWYA ALGFVALVLIMRKG
Sbjct: 61 AAYINLAWVGLTDKDQWYAVALGFVALVLIMRKG 94


>ref|YP_984716.1| putative integral membrane protein [Acidovorax sp. JS42]
 ref|YP_002551864.1| integral membrane protein [Acidovorax ebreus TPSY]
 gb|ABM40640.1| putative integral membrane protein [Acidovorax sp. JS42]
 gb|ACM31864.1| putative integral membrane protein [Acidovorax ebreus TPSY]
          Length = 102

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 11/101 (10%)

Query: 5   LSWMSWTPPVAIFFVCVVLMLIGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYI 64
             WM+WT PVA+FF C+VLMLIGMTVWEI+SPT+ERKGFLPM TTRGDRLFIGLLTAAYI
Sbjct: 2   FDWMAWTTPVAVFFTCIVLMLIGMTVWEIQSPTVERKGFLPMTTTRGDRLFIGLLTAAYI 61

Query: 65  NLAWVGLTD-MEQWYAA----------ALGFVALVLIMRKG 94
           NLAWVGL + M QW++            L  + L L++RKG
Sbjct: 62  NLAWVGLGEKMAQWFSLEAEPSVWISFVLSMLVLALVLRKG 102


>ref|ZP_04761569.1| putative integral membrane protein [Acidovorax delafieldii 2AN]
 gb|EER61588.1| putative integral membrane protein [Acidovorax delafieldii 2AN]
          Length = 102

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 72/101 (71%), Gaps = 11/101 (10%)

Query: 5   LSWMSWTPPVAIFFVCVVLMLIGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYI 64
             WM+WT PVA+FF C+VLMLIGMTVWEI+SPT+ RKGFLP+ TTRGDRLFIGLLTAAY+
Sbjct: 2   FDWMAWTTPVAVFFTCIVLMLIGMTVWEIKSPTVMRKGFLPIETTRGDRLFIGLLTAAYV 61

Query: 65  NLAWVGL-----------TDMEQWYAAALGFVALVLIMRKG 94
           NL +VGL            D   W + AL    L LIMRKG
Sbjct: 62  NLIFVGLGGKFAQWFGLDGDPSVWISFALSMGLLALIMRKG 102


>ref|ZP_08274035.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32499.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 87

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/87 (68%), Positives = 68/87 (78%)

Query: 8  MSWTPPVAIFFVCVVLMLIGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYINLA 67
          M WT PVAIFFV V LML GMT+WE++SPTIERKGF+PM TTRGDRLFIGLLTAAYINL 
Sbjct: 1  MEWTTPVAIFFVSVGLMLAGMTIWELKSPTIERKGFIPMITTRGDRLFIGLLTAAYINLG 60

Query: 68 WVGLTDMEQWYAAALGFVALVLIMRKG 94
          W  LT   QW    L F+ L+++MR G
Sbjct: 61 WTALTTGAQWPGTVLSFIVLLIVMRWG 87


>ref|YP_001890391.1| putative transmembrane protein [Burkholderia phytofirmans PsJN]
 gb|ACD21020.1| putative transmembrane protein [Burkholderia phytofirmans PsJN]
          Length = 93

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 72/92 (78%), Gaps = 2/92 (2%)

Query: 5  LSWMSWTPPVAIFFVCVVLMLIGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAYI 64
          L+WM WTP VAIFF CVV+ML GMTVWEIRSPT+ERKGFLP+ TTRGDRLFIGLL AAYI
Sbjct: 2  LTWMYWTPEVAIFFGCVVVMLAGMTVWEIRSPTLERKGFLPIGTTRGDRLFIGLLIAAYI 61

Query: 65 NLAWVGLT--DMEQWYAAALGFVALVLIMRKG 94
          NLAWVG++      W   A   + L+++M KG
Sbjct: 62 NLAWVGISAEHASAWPGFAASMLVLLIVMWKG 93