BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2614.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirill... 483 e-134 ref|YP_001900885.1| binding-protein-dependent transport systems ... 424 e-117 ref|ZP_07675362.1| sugar ABC transporter, permease protein [Rals... 424 e-117 ref|YP_002982926.1| binding-protein-dependent transport systems ... 424 e-116 ref|NP_521170.1| transmembrane ABC transporter protein [Ralstoni... 421 e-116 >ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62487.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 272 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 268/272 (98%), Positives = 270/272 (99%) Query: 7 MNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF 66 MN TQDK+LTR LVML+YIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF Sbjct: 1 MNNTQDKSLTRLLVMLLYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF 60 Query: 67 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 126 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF Sbjct: 61 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 120 Query: 127 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 186 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR Sbjct: 121 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 180 Query: 187 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 246 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI Sbjct: 181 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 240 Query: 247 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV Sbjct: 241 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 272 >ref|YP_001900885.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] gb|ACD28453.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] Length = 277 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 220/273 (80%), Positives = 249/273 (91%) Query: 6 NMNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTI 65 N N + + R + + VY+AF ++PLYW+L+ SLKTNEETL+ F++WP T +NYK I Sbjct: 5 NHNNEHKRRIARAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKII 64 Query: 66 FTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 125 FTDPSWY GYINSIIYV MNTV+S +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV Sbjct: 65 FTDPSWYWGYINSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 124 Query: 126 FLLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFP 185 FLLPFFQLYST+GL DTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP Sbjct: 125 FLLPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFP 184 Query: 186 RFFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWG 245 +FFL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG Sbjct: 185 KFFLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWG 244 Query: 246 ILAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 +LAAAGVLTI+PGALVIWFVRN+IAKGFAMGRV Sbjct: 245 VLAAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 277 >ref|ZP_07675362.1| sugar ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP66262.1| sugar ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 276 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 220/273 (80%), Positives = 249/273 (91%) Query: 6 NMNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTI 65 N N + + R + + VY+AF ++PLYW+L+ SLKTNEETL+ F++WP T +NYK I Sbjct: 4 NNNNEHQRKIARAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKII 63 Query: 66 FTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 125 FTDPSWY GYINSIIYV MNTV+S +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV Sbjct: 64 FTDPSWYWGYINSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 123 Query: 126 FLLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFP 185 FLLPFFQLYST+GL DTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP Sbjct: 124 FLLPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFP 183 Query: 186 RFFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWG 245 +FFL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG Sbjct: 184 KFFLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWG 243 Query: 246 ILAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 +LAAAGVLTI+PGALVIWFVRN+IAKGFAMGRV Sbjct: 244 VLAAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 276 >ref|YP_002982926.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] gb|ACS64254.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] Length = 276 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 220/273 (80%), Positives = 249/273 (91%) Query: 6 NMNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTI 65 N N + + R + + VY+AF ++PLYW+L+ SLKTNEETL+ F++WP T +NYK I Sbjct: 4 NNNNEHQRKIARAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKII 63 Query: 66 FTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 125 FTDPSWY GYINSIIYV MNTV+S +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV Sbjct: 64 FTDPSWYWGYINSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 123 Query: 126 FLLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFP 185 FLLPFFQLYST+GL DTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP Sbjct: 124 FLLPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFP 183 Query: 186 RFFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWG 245 +FFL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG Sbjct: 184 KFFLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWG 243 Query: 246 ILAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 +LAAAGVLTI+PGALVIWFVRN+IAKGFAMGRV Sbjct: 244 VLAAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 276 >ref|NP_521170.1| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD16758.1| probable transmembrane abc transporter protein [Ralstonia solanacearum GMI1000] Length = 276 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 220/273 (80%), Positives = 249/273 (91%) Query: 6 NMNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTI 65 N N + + R + ++VY+AF ++PLYW+L+ SLKTNEETL+ F+LWP T +NYK I Sbjct: 4 NNNNEHKRKIARAITLVVYVAFAVLPLYWMLSMSLKTNEETLAGFSLWPRLMTFDNYKVI 63 Query: 66 FTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 125 FTDPSWY GYINSI+YV MNTV+S +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV Sbjct: 64 FTDPSWYWGYINSILYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAV 123 Query: 126 FLLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFP 185 FLLPFFQLYST+GL DTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP Sbjct: 124 FLLPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFP 183 Query: 186 RFFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWG 245 FFL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG Sbjct: 184 AFFLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWG 243 Query: 246 ILAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 +LAAAGVLTI+PGALVIWFVRN+IAKGFAMGRV Sbjct: 244 VLAAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 276