BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2613.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774394.1| sugar ABC transporter permease [Herbaspirill... 533 e-149 ref|NP_521169.1| sugar-phosphate transmembrane ABC transporter p... 471 e-131 ref|YP_003744351.1| ABC transporter permease [Ralstonia solanace... 469 e-130 ref|YP_003751126.1| ABC transporter permease [Ralstonia solanace... 468 e-130 emb|CCA85411.1| putative ABC transporter permease [Ralstonia syz... 468 e-130 >ref|YP_003774394.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62486.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 288/296 (97%), Positives = 294/296 (99%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFR+VMRD Sbjct: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFREVMRDG 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 ELHAALLRQLIFSFCVLLVQ+PLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW Sbjct: 61 ELHAALLRQLIFSFCVLLVQIPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGLGG+VLNLLG+DYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD Sbjct: 121 QIFGRADIGLGGYVLNLLGIDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 AYYQAAQIDGASRWAVFR+IQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT Sbjct: 181 AYYQAAQIDGASRWAVFRYIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQHE 296 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGN+ANASGGQHE Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNHANASGGQHE 296 >ref|NP_521169.1| sugar-phosphate transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD16757.1| probable sugar abc transporter, permease abc transporter protein [Ralstonia solanacearum GMI1000] Length = 296 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 242/295 (82%), Positives = 266/295 (90%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG+DWFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V++PLGIGLALAMP KGWK+SA LVILAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLGVEIPLGIGLALAMPSKGWKASAALVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGL G+ LN LGVDY+Y S+P DAW+TVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRLGVDYSYTSHPFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ + A+G H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASTAAGDDH 295 >ref|YP_003744351.1| ABC transporter permease [Ralstonia solanacearum CFBP2957] emb|CBJ41707.1| putative ABC transporter permease [Ralstonia solanacearum CFBP2957] Length = 296 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 241/295 (81%), Positives = 265/295 (89%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG+DWFR ++RDS Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDS 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V++PLGIGLALAMP KGWK+SA LV+LAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVVLAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGL G+ LN +GVDYNY S+ DAW+TVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGVDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ + A G H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRLGSASAAVGDDH 295 >ref|YP_003751126.1| ABC transporter permease [Ralstonia solanacearum PSI07] emb|CBJ49817.1| putative ABC transporter permease [Ralstonia solanacearum PSI07] Length = 296 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 240/295 (81%), Positives = 264/295 (89%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG+DWFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V++PLGIGLALAMP KGWK+SA LVILAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGL G+ LN +G+DYNY S+ DAW+TVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGIDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ + A G H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAMGDDH 295 >emb|CCA85411.1| putative ABC transporter permease [Ralstonia syzygii R24] Length = 296 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 240/295 (81%), Positives = 264/295 (89%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG+DWFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V++PLGIGLALAMP KGWK+SA LVILAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGL G+ LN +G+DYNY S+ DAW+TVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGIDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ + A G H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAVGDDH 295