BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2611.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum... 573 e-162 gb|AEG67753.1| sn-glycerol-3-phosphate transport ATP-binding pro... 383 e-104 ref|ZP_07675365.1| sugar ABC transporter, ATP-binding protein [R... 382 e-104 ref|YP_001900882.1| ABC transporter-like protein [Ralstonia pick... 381 e-104 ref|YP_003744353.1| sn-glycerol-3-phosphate transport ATP-bindin... 381 e-104 >ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62484.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 305/322 (94%), Positives = 315/322 (97%) Query: 1 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 60 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ Sbjct: 45 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 104 Query: 61 PEQEISKRVKEIADKLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 120 PEQEISKRVKEIADKLHI HLLQRLP ELSGGQQQRCALARALIKRAPLVLLDEPLVNLD Sbjct: 105 PEQEISKRVKEIADKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 164 Query: 121 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSP 180 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMH+GRLLQFAPTLELFNSP Sbjct: 165 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSP 224 Query: 181 ASTRVAAIFNDPPMNLLDATAISTAHGVAAIRMNDGSVLEIAGRSLSLSEGQPCKLGIRC 240 AST+VAAIFNDPPMNLL+ATAI++A GVAAI M+DGSVLEIAGR L+LSEGQ CKLGIRC Sbjct: 225 ASTQVAAIFNDPPMNLLEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRC 284 Query: 241 NDVRLEALSAPGVSLGCSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSI 300 NDVRLEAL+ PGVSLGCSVTLAELSGSETYLHLRHG+VPLVAQLSGVHEVAIGSTVQVSI Sbjct: 285 NDVRLEALTGPGVSLGCSVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSI 344 Query: 301 AAAKAFLFDTQGRLLSAPLETR 322 AAAKAFLFDTQGRLLSAP+ETR Sbjct: 345 AAAKAFLFDTQGRLLSAPMETR 366 >gb|AEG67753.1| sn-glycerol-3-phosphate transport ATP-binding protein [Ralstonia solanacearum Po82] Length = 376 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 208/327 (63%), Positives = 245/327 (74%), Gaps = 13/327 (3%) Query: 1 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 60 MRI+AGLD+PT GRVLVDG+DVTGVGVR RNLAMVYQQFINYP +TV++NIA+PLRLQ Sbjct: 45 MRIMAGLDRPTTGRVLVDGKDVTGVGVRNRNLAMVYQQFINYPAMTVYDNIASPLRLQGT 104 Query: 61 PEQEISKRVKEIADKLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 120 EI RV+ +A KLHI HLLQRLP LSGGQQQRCALARAL+KRAPLVLLDEPLVNLD Sbjct: 105 ARDEIDARVRTVAAKLHIDHLLQRLPAALSGGQQQRCALARALVKRAPLVLLDEPLVNLD 164 Query: 121 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSP 180 YKLREELR+EL SLFA G TTVVYATTEPQEALLLGGHT VMHEGR+LQ PTL++++ P Sbjct: 165 YKLREELRAELASLFADGGTTVVYATTEPQEALLLGGHTIVMHEGRVLQSGPTLQMYDVP 224 Query: 181 ASTRVAAIFNDPPMNLLDATAISTAHGVAAIRMNDGSVLEIA---GRSLSLSEGQPCKLG 237 S AAIFNDPPMN+ AT + H IR+ D + I R L + G C++G Sbjct: 225 VSVDAAAIFNDPPMNVFHATVVEGNH----IRLQDWNNQGIDVPWTRPLPMHAGTRCRVG 280 Query: 238 IRCNDVRLEALSAPGVSLGCSVTLAELSGSETYLHLR------HGDVPLVAQLSGVHEVA 291 +R + +RL ++ V+L V LAELSGSETYLHLR G + LVAQL GVHE Sbjct: 281 LRPSHIRLATRTSRCVALPGLVELAELSGSETYLHLRAHAPGESGGIGLVAQLPGVHEFG 340 Query: 292 IGSTVQVSIAAAKAFLFDTQGRLLSAP 318 +G+T+ V + A+ FLFD G+L+SAP Sbjct: 341 LGATLDVFVDPAELFLFDDAGKLVSAP 367 >ref|ZP_07675365.1| sugar ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP66265.1| sugar ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] Length = 362 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 207/325 (63%), Positives = 249/325 (76%), Gaps = 13/325 (4%) Query: 1 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 60 MRI+AGLD+PT GRVLVDG+DVTGVGVR+RNLAMVYQQFINYP +TV++NIA+PLRLQ Sbjct: 35 MRIMAGLDRPTTGRVLVDGKDVTGVGVRDRNLAMVYQQFINYPAMTVYDNIASPLRLQGT 94 Query: 61 PEQEISKRVKEIADKLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 120 + EI RV+ +A KLHI HLLQRLP ELSGGQQQRCALARAL+KRAPLVLLDEPLVNLD Sbjct: 95 NKGEIDTRVRAVASKLHIDHLLQRLPAELSGGQQQRCALARALVKRAPLVLLDEPLVNLD 154 Query: 121 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSP 180 YKLREELR+EL SLFA G TTVVYATTEPQEALLLGGHT VMHEGR+LQ PTL+++ P Sbjct: 155 YKLREELRAELASLFADGGTTVVYATTEPQEALLLGGHTVVMHEGRVLQDGPTLDMYEVP 214 Query: 181 ASTRVAAIFNDPPMNLLDATAISTAHGVAAIRMNDGSVLEIA-GRSLSLSEGQPCKLGIR 239 S AAIFNDPPMN+LDAT + IR+ G +++A R L ++ G C++G+R Sbjct: 215 VSVNAAAIFNDPPMNVLDATVVEGNQ----IRLPQG--IDVAWTRPLPMAAGTRCRIGLR 268 Query: 240 CNDVRLEALSAPGVSLGCSVTLAELSGSETYLHLR------HGDVPLVAQLSGVHEVAIG 293 + +RL + V+L +V LAELSGSETYLH+R + LVAQL GVHE +G Sbjct: 269 PSHIRLAPRNGGAVALPGTVELAELSGSETYLHVRAHAAGQSNTIGLVAQLPGVHEFELG 328 Query: 294 STVQVSIAAAKAFLFDTQGRLLSAP 318 + + V + A+ FLFD G+L+SAP Sbjct: 329 AALDVFVDPAELFLFDDAGKLVSAP 353 >ref|YP_001900882.1| ABC transporter-like protein [Ralstonia pickettii 12J] gb|ACD28450.1| ABC transporter related [Ralstonia pickettii 12J] Length = 372 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 207/325 (63%), Positives = 249/325 (76%), Gaps = 13/325 (4%) Query: 1 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 60 MRI+AGLD+PT GRVLVDG+DVTGVGVR+RNLAMVYQQFINYP +TV++NIA+PLRLQ Sbjct: 45 MRIMAGLDRPTTGRVLVDGKDVTGVGVRDRNLAMVYQQFINYPAMTVYDNIASPLRLQGT 104 Query: 61 PEQEISKRVKEIADKLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 120 + EI RV+ +A KLHI HLLQRLP ELSGGQQQRCALARAL+KRAPLVLLDEPLVNLD Sbjct: 105 NKGEIDSRVRAVAAKLHIEHLLQRLPAELSGGQQQRCALARALVKRAPLVLLDEPLVNLD 164 Query: 121 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSP 180 YKLREELR+EL SLFA G TTVVYATTEPQEALLLGGHT VMHEGR+LQ PTL+++ P Sbjct: 165 YKLREELRAELASLFADGGTTVVYATTEPQEALLLGGHTVVMHEGRVLQDGPTLDMYEVP 224 Query: 181 ASTRVAAIFNDPPMNLLDATAISTAHGVAAIRMNDGSVLEIA-GRSLSLSEGQPCKLGIR 239 S AAIFNDPPMN+LDAT + IR+ G +++A R L ++ G C++G+R Sbjct: 225 VSVNAAAIFNDPPMNVLDATVVEGNQ----IRLPQG--IDVAWTRPLPMTAGTRCRIGLR 278 Query: 240 CNDVRLEALSAPGVSLGCSVTLAELSGSETYLHLR------HGDVPLVAQLSGVHEVAIG 293 + +RL + V+L +V LAELSGSETYLH+R + LVAQL GVHE +G Sbjct: 279 PSHIRLAPRNGGAVALPGTVELAELSGSETYLHVRAHAAGQSNTIGLVAQLPGVHEFELG 338 Query: 294 STVQVSIAAAKAFLFDTQGRLLSAP 318 + + V + A+ FLFD G+L+SAP Sbjct: 339 AALDVFVDPAELFLFDDAGKLVSAP 363 >ref|YP_003744353.1| sn-glycerol-3-phosphate transport ATP-binding protein [Ralstonia solanacearum CFBP2957] emb|CBJ41709.1| sn-glycerol-3-phosphate transport ATP-binding protein [Ralstonia solanacearum CFBP2957] Length = 375 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 207/327 (63%), Positives = 245/327 (74%), Gaps = 13/327 (3%) Query: 1 MRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQ 60 MRI+AGLD+PT GRVLVDG+DVTGVGVR+RNLAMVYQQFINYP +TV++NIA+PLRLQ Sbjct: 44 MRIMAGLDRPTTGRVLVDGKDVTGVGVRDRNLAMVYQQFINYPAMTVYDNIASPLRLQGT 103 Query: 61 PEQEISKRVKEIADKLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLD 120 EI RV+ +A KLHI HLLQRLP LSGGQQQRCALARAL+KRAPLVLLDEPLVNLD Sbjct: 104 ARDEIDARVRTVAAKLHIDHLLQRLPAALSGGQQQRCALARALVKRAPLVLLDEPLVNLD 163 Query: 121 YKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSP 180 YKLREELR+EL SLFA G TTVVYATTEPQEALLLGGHT VMHEGR+LQ PTL++++ P Sbjct: 164 YKLREELRAELASLFADGGTTVVYATTEPQEALLLGGHTIVMHEGRVLQSGPTLQMYDVP 223 Query: 181 ASTRVAAIFNDPPMNLLDATAISTAHGVAAIRMNDGSVLEIA---GRSLSLSEGQPCKLG 237 S AAIFNDPPMN+ AT + H IR+ D + I R L + G C++G Sbjct: 224 VSVDAAAIFNDPPMNVFHATVVEGNH----IRLQDWNNPGIDVPWARPLPMHAGTRCRVG 279 Query: 238 IRCNDVRLEALSAPGVSLGCSVTLAELSGSETYLHLRH------GDVPLVAQLSGVHEVA 291 +R + +RL ++ V+L V LAELSGSETYLHLR G + LVAQL GVHE Sbjct: 280 LRPSHIRLATRTSRCVALPGLVELAELSGSETYLHLRAHAPGEPGSIGLVAQLPGVHEFE 339 Query: 292 IGSTVQVSIAAAKAFLFDTQGRLLSAP 318 +G+ + V + A+ FLFD G+L+SAP Sbjct: 340 LGAALDVFVDPAELFLFDDAGKLVSAP 366