BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2610.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase [Herbaspi... 948 0.0 ref|YP_001900881.1| glycerol-3-phosphate dehydrogenase [Ralstoni... 691 0.0 ref|ZP_07675366.1| glycerol-3-phosphate dehydrogenase [Ralstonia... 687 0.0 ref|YP_002982922.1| glycerol-3-phosphate dehydrogenase [Ralstoni... 683 0.0 emb|CCA85408.1| glycerol-3-phosphate dehydrogenase [Ralstonia sy... 666 0.0 >ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62483.1| glycerol-3-phosphate dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 485/510 (95%), Positives = 494/510 (96%) Query: 1 MTLEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYY 60 MTLEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYY Sbjct: 1 MTLEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYY 60 Query: 61 EFKLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDYLAKREILPA 120 EFKLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYD+LAKREILP Sbjct: 61 EFKLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDHLAKREILPP 120 Query: 121 SEGANLARHPGGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISAR 180 SEGANLARH GQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISAR Sbjct: 121 SEGANLARHDAGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISAR 180 Query: 181 REGDTWHAVLEHQHASGVQQEEVRARAIVNAAGPWAARFAQSVPQAKTGRSLRLIKGSHI 240 REGD WHAVLEHQ GVQQEEVRARAIVNAAGPWAARFAQ+VPQAK+GRSLRLIKGSHI Sbjct: 181 REGDIWHAVLEHQREGGVQQEEVRARAIVNAAGPWAARFAQAVPQAKSGRSLRLIKGSHI 240 Query: 241 VVKRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAEEIDYLCE 300 VVKR+FDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDA EIDYLC+ Sbjct: 241 VVKRMFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAAEIDYLCD 300 Query: 301 MANRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLECDDAGAPMLNVWGGKIT 360 MANRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLECDDAGAPMLNVWGGKIT Sbjct: 301 MANRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLECDDAGAPMLNVWGGKIT 360 Query: 361 TYRKLAEEALFMLAPHLGASSQPWTAGAPLPGGDLEQPGKMVARYDFDAYLRKLQARYPW 420 TYRKLAEEAL MLAPHLGASSQ WTAGAPLPGGDLEQPGKMVARYDFDAYLRK QAR+PW Sbjct: 361 TYRKLAEEALAMLAPHLGASSQSWTAGAPLPGGDLEQPGKMVARYDFDAYLRKFQARHPW 420 Query: 421 LPAGLAHRYARSYGSRVDQIIGQADSLAALGEELTPGLYEAEARYLVQHEWARGADDILW 480 LPA LAHRYARSYGSRV+QIIGQADSLAALGEEL+PGLYEAEARYLVQHEWAR ADDILW Sbjct: 421 LPAELAHRYARSYGSRVEQIIGQADSLAALGEELSPGLYEAEARYLVQHEWARSADDILW 480 Query: 481 RRSKLGLHCGPQHRGRLEAWLANLPDATPL 510 RRSKLGLHCGPQHRGRLEAWLA+LPD L Sbjct: 481 RRSKLGLHCGPQHRGRLEAWLASLPDHATL 510 >ref|YP_001900881.1| glycerol-3-phosphate dehydrogenase [Ralstonia pickettii 12J] gb|ACD28449.1| FAD dependent oxidoreductase [Ralstonia pickettii 12J] Length = 525 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 363/516 (70%), Positives = 411/516 (79%), Gaps = 12/516 (2%) Query: 3 LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEF 62 L+ DLLVVGGGING GIARDA GRGL V+LCE+ DLAQHTSSASTKLIHGGLRYLEYYEF Sbjct: 9 LDCDLLVVGGGINGVGIARDAVGRGLSVVLCEKDDLAQHTSSASTKLIHGGLRYLEYYEF 68 Query: 63 KLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDYLAKREILPASE 122 LVRKALQEREVLLR APHI+WPLRFVMPHDA QRPAWMIRAGLF+YD+LA+R LP SE Sbjct: 69 SLVRKALQEREVLLRMAPHIMWPLRFVMPHDAAQRPAWMIRAGLFLYDHLARRRFLPGSE 128 Query: 123 GANLARHPGGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARRE 182 LARHP G+PLK Y +GFVYSDGWVDDARLVVLNA DA +RGA+I TRT+C++A R Sbjct: 129 SIKLARHPAGKPLKAGYTRGFVYSDGWVDDARLVVLNARDAADRGAQIFTRTRCLNAERR 188 Query: 183 GDTWHAVLEHQHASGVQQEEVRARAIVNAAGPWAARFAQSVPQAKTGRSLRLIKGSHIVV 242 D WHA L G++ VRA+AIVNAAGPWAA FA+S + R LRLIKGSHIVV Sbjct: 189 ADGWHASL--AGPDGIRS--VRAKAIVNAAGPWAAEFARSAHALPSTRGLRLIKGSHIVV 244 Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAEEIDYLCEMA 302 +R+FDHP+AYIFQNPD RI+FAIPYQ +FTLIGTTDLEY G +V IDA EI YLCEMA Sbjct: 245 RRMFDHPFAYIFQNPDGRIVFAIPYQNDFTLIGTTDLEYKGSVDQVAIDAGEIQYLCEMA 304 Query: 303 NRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLEC----DDAGAPMLNVWGGK 358 +RYF RQ+ DVVW+YSGVRPLLDDSA NASAITRDYL+EC D A AP++NVWGGK Sbjct: 305 SRYFTRQLTPSDVVWSYSGVRPLLDDSAANASAITRDYLVECETGADGANAPLINVWGGK 364 Query: 359 ITTYRKLAEEALFMLAPHLGASSQP-WTAGAPLPGGDLEQPGKMVARYDFDAYLRKLQAR 417 ITTYRKLAEEAL LAPHL + +P WTA A LPGGDLE PG++VA Y FD ++ +LQ R Sbjct: 365 ITTYRKLAEEALDQLAPHLPLAGKPSWTATASLPGGDLEAPGQLVAEYTFDDFVARLQKR 424 Query: 418 YPWLPAGLAHRYARSYGSRVDQIIGQADSLAALGEELTPGLYEAEARYLVQHEWARGADD 477 PWLP LA RYA YG+RV+ ++ A L LG E+TPGLYEAE RYL++HEWAR A D Sbjct: 425 LPWLPTLLAMRYAHQYGTRVNTLLAGATRLEELGAEVTPGLYEAEIRYLIEHEWARTAQD 484 Query: 478 ILWRRSKLGLHCGPQHRGRLEAWLA-NLP--DATPL 510 ILWRR+KLGLH R RLE WLA +LP D TP+ Sbjct: 485 ILWRRTKLGLHASDADRSRLEVWLARHLPEGDTTPV 520 >ref|ZP_07675366.1| glycerol-3-phosphate dehydrogenase [Ralstonia sp. 5_7_47FAA] gb|EFP66266.1| glycerol-3-phosphate dehydrogenase [Ralstonia sp. 5_7_47FAA] Length = 525 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 359/511 (70%), Positives = 408/511 (79%), Gaps = 10/511 (1%) Query: 3 LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEF 62 L+ DLLVVGGGING GIARDA GRGL V+LCE+ DLAQHTSSASTKLIHGGLRYLEYYEF Sbjct: 9 LDCDLLVVGGGINGVGIARDAVGRGLSVVLCEKDDLAQHTSSASTKLIHGGLRYLEYYEF 68 Query: 63 KLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDYLAKREILPASE 122 LVRKALQEREVLLR APHI+WPLRFVMPHDA QRPAWMIRAGLF+YD+LA+R LP SE Sbjct: 69 SLVRKALQEREVLLRMAPHIMWPLRFVMPHDAAQRPAWMIRAGLFLYDHLARRRFLPGSE 128 Query: 123 GANLARHPGGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARRE 182 LARHP GQPLK Y +GFVYSDGWVDDARLVVLNA DA +RGA+ILTRT+C++A R Sbjct: 129 SIKLARHPAGQPLKAGYTRGFVYSDGWVDDARLVVLNARDAADRGAQILTRTRCLNAERR 188 Query: 183 GDTWHAVLEHQHASGVQQEEVRARAIVNAAGPWAARFAQSVPQAKTGRSLRLIKGSHIVV 242 D WHA L G++ VRA+AIVNAAGPWAA FA+S + R LRLIKGSHIVV Sbjct: 189 ADGWHASL--AGPDGIRS--VRAKAIVNAAGPWAAEFARSAHALPSTRGLRLIKGSHIVV 244 Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAEEIDYLCEMA 302 +R+FDHP+AYIFQNPD RI+FAIPYQ +FTLIGTTDLEY G +V IDA EI YLCEMA Sbjct: 245 RRMFDHPFAYIFQNPDGRIVFAIPYQNDFTLIGTTDLEYKGSVDQVAIDAGEIQYLCEMA 304 Query: 303 NRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLEC----DDAGAPMLNVWGGK 358 +RYF RQ+ DVVW+YSGVRPLLDDSA NASAITRDYL+EC D A AP++NVWGGK Sbjct: 305 SRYFTRQLTPSDVVWSYSGVRPLLDDSAANASAITRDYLVECETGADGASAPLINVWGGK 364 Query: 359 ITTYRKLAEEALFMLAPHLGASSQP-WTAGAPLPGGDLEQPGKMVARYDFDAYLRKLQAR 417 ITTYRKLAEEAL LAPHL + +P WTA A LPGGDLE PG++VA Y FD ++ +LQ R Sbjct: 365 ITTYRKLAEEALDQLAPHLPLAGKPSWTATASLPGGDLEAPGQLVAEYTFDDFVTRLQKR 424 Query: 418 YPWLPAGLAHRYARSYGSRVDQIIGQADSLAALGEELTPGLYEAEARYLVQHEWARGADD 477 PW+P LA RYA YG+R++ ++ A L LG E+TPGLYEAE RYL++HEWAR A D Sbjct: 425 LPWMPTQLALRYAHQYGTRINTLLAGATRLEELGAEVTPGLYEAEIRYLIEHEWARTAQD 484 Query: 478 ILWRRSKLGLHCGPQHRGRLEAWLA-NLPDA 507 ILWRR+KLGLH RLE WLA +LP+ Sbjct: 485 ILWRRTKLGLHASDADCSRLEGWLARHLPEG 515 >ref|YP_002982922.1| glycerol-3-phosphate dehydrogenase [Ralstonia pickettii 12D] gb|ACS64250.1| FAD dependent oxidoreductase [Ralstonia pickettii 12D] Length = 525 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 357/511 (69%), Positives = 407/511 (79%), Gaps = 10/511 (1%) Query: 3 LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEF 62 L+ DLLVVGGGING GIARDA GRGL V+LCE+ DLAQHTSSASTKLIHGGLRYLEYYEF Sbjct: 9 LDCDLLVVGGGINGVGIARDAVGRGLSVVLCEKDDLAQHTSSASTKLIHGGLRYLEYYEF 68 Query: 63 KLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDYLAKREILPASE 122 LVRKALQEREVLLR APHI+WPLRFVMPHDA QRPAWMIRAGLF+YD+LA+R LP SE Sbjct: 69 SLVRKALQEREVLLRMAPHIMWPLRFVMPHDAAQRPAWMIRAGLFLYDHLARRRFLPGSE 128 Query: 123 GANLARHPGGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARRE 182 LARHP GQPLK Y +GFVYSDGWVDDARLVVLNA DA +RGA+ILTRT+C++A R Sbjct: 129 SIKLARHPAGQPLKAGYTRGFVYSDGWVDDARLVVLNARDAADRGAQILTRTRCLNAERR 188 Query: 183 GDTWHAVLEHQHASGVQQEEVRARAIVNAAGPWAARFAQSVPQAKTGRSLRLIKGSHIVV 242 WHA L G++ VRA+AIVNAAGPWAA FA+S + R LRLIKGSHIVV Sbjct: 189 AGGWHASL--AGPDGIRS--VRAKAIVNAAGPWAAEFARSAHALPSTRGLRLIKGSHIVV 244 Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAEEIDYLCEMA 302 +R+FDHP+AYIFQNPD RI+FAIPYQ +FTLIGTTDLEY G +V IDA EI YLCEMA Sbjct: 245 RRMFDHPFAYIFQNPDGRIVFAIPYQNDFTLIGTTDLEYKGSVDQVAIDAGEIQYLCEMA 304 Query: 303 NRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLEC----DDAGAPMLNVWGGK 358 +RYF +Q+ DVVW+YSGVRPLLDDSA NASAITRDYL+EC D A AP++NVWGGK Sbjct: 305 SRYFTQQLTPADVVWSYSGVRPLLDDSAANASAITRDYLVECETGADSASAPLINVWGGK 364 Query: 359 ITTYRKLAEEALFMLAPHLGASSQP-WTAGAPLPGGDLEQPGKMVARYDFDAYLRKLQAR 417 ITTYRKLAEEAL LAPHL + +P WTA A LPGGDLE PG++VA Y FD ++ +LQ R Sbjct: 365 ITTYRKLAEEALDQLAPHLPLAGKPSWTATASLPGGDLEAPGQLVAEYTFDDFVTRLQKR 424 Query: 418 YPWLPAGLAHRYARSYGSRVDQIIGQADSLAALGEELTPGLYEAEARYLVQHEWARGADD 477 PW+P LA RYA YG+R++ ++ A L LG E+TPGLYEAE RYL++HEWAR A D Sbjct: 425 LPWMPTQLALRYAHQYGTRINTLLAGATRLEELGAEVTPGLYEAEIRYLIEHEWARTAQD 484 Query: 478 ILWRRSKLGLHCGPQHRGRLEAWLA-NLPDA 507 ILWRR+KLGLH RLE WLA +LP+ Sbjct: 485 ILWRRTKLGLHASDADCSRLEGWLARHLPEG 515 >emb|CCA85408.1| glycerol-3-phosphate dehydrogenase [Ralstonia syzygii R24] Length = 525 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 352/505 (69%), Positives = 407/505 (80%), Gaps = 9/505 (1%) Query: 3 LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEF 62 L+ DLLVVGGGING GIARDA GRGL V+LCE+ DLAQHTSSASTKLIHGGLRYLEYYEF Sbjct: 9 LDCDLLVVGGGINGVGIARDAVGRGLSVVLCEKDDLAQHTSSASTKLIHGGLRYLEYYEF 68 Query: 63 KLVRKALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDYLAKREILPASE 122 LVRKALQEREVLLR APHI+WPLRFVMPHD +QRPAWMIRAGLF+YD+LA+R LP SE Sbjct: 69 SLVRKALQEREVLLRMAPHIMWPLRFVMPHDRSQRPAWMIRAGLFLYDHLARRRFLPGSE 128 Query: 123 GANLARHPGGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARRE 182 LA+HP G+PLK + +GFVYSDGWVDDARLVVLNA DA +RGA+ILTRT+C++A R Sbjct: 129 AVRLAQHPAGRPLKPGFTRGFVYSDGWVDDARLVVLNARDAADRGAQILTRTRCLNAERR 188 Query: 183 GDTWHAVLEHQHASGVQQEEVRARAIVNAAGPWAARFAQSVPQAKTGRSLRLIKGSHIVV 242 D WHA L G++ VRA+AIVNAAGPWAA FA++ + R LRLIKGSHI+V Sbjct: 189 ADGWHASL--TGPDGIR--PVRAKAIVNAAGPWAAEFARAAHALPSTRGLRLIKGSHIIV 244 Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAEEIDYLCEMA 302 +R+FDHP+AYIFQNPD RI+FAIPYQ++FTLIGTTDLEY G +V IDA EIDYLCEMA Sbjct: 245 RRMFDHPFAYIFQNPDGRIVFAIPYQDDFTLIGTTDLEYTGPLDQVAIDAGEIDYLCEMA 304 Query: 303 NRYFKRQIGKEDVVWTYSGVRPLLDDSAENASAITRDYLLEC----DDAGAPMLNVWGGK 358 RYF +Q+ DVVW+YSGVRPLLDDSA +ASAITRDY++EC D GAP++NVWGGK Sbjct: 305 GRYFAQQLTPADVVWSYSGVRPLLDDSAASASAITRDYMVECETGADGKGAPLINVWGGK 364 Query: 359 ITTYRKLAEEALFMLAPHLGASSQP-WTAGAPLPGGDLEQPGKMVARYDFDAYLRKLQAR 417 ITTYRKLAEEAL LAPHL A+ +P WTA A LPGGDLE PG++VA+Y F ++ +LQ R Sbjct: 365 ITTYRKLAEEALDQLAPHLPAAGKPSWTATASLPGGDLETPGQLVAQYTFADFVTRLQKR 424 Query: 418 YPWLPAGLAHRYARSYGSRVDQIIGQADSLAALGEELTPGLYEAEARYLVQHEWARGADD 477 PWLP LA RYA YG+RV ++ A L LG E+TPGLYEAE RYL++HEWAR A D Sbjct: 425 LPWLPPRLARRYAHQYGTRVTTLLAGAMRLDDLGTEVTPGLYEAEIRYLIEHEWARTAQD 484 Query: 478 ILWRRSKLGLHCGPQHRGRLEAWLA 502 ILWRR+KLGL+ R RLEAWLA Sbjct: 485 ILWRRTKLGLYTAEADRNRLEAWLA 509