BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2609.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774390.1| glycerol-3-phosphate regulon repressor trans... 451 e-125 ref|ZP_08274029.1| Glycerol-3-phosphate regulon repressor, DeoR ... 336 3e-90 ref|YP_002006011.1| glycerol-3-phosphate regulon repressor, deor... 311 5e-83 ref|YP_001631198.1| hypothetical protein Bpet2588 [Bordetella pe... 308 5e-82 ref|YP_003979521.1| glycerol-3-phosphate regulon repressor [Achr... 308 9e-82 >ref|YP_003774390.1| glycerol-3-phosphate regulon repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62482.1| glycerol-3-phosphate regulon repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 249/257 (96%), Positives = 253/257 (98%) Query: 40 ISITSMLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGV 99 I+ +MLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGV Sbjct: 12 INYHTMLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGV 71 Query: 100 GLLSSTENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNL 159 GLLSSTENIAYP+RQVMHA+AKRRIGRTVAARVPDGCSLILNLGTTTEEVA ALQQHKNL Sbjct: 72 GLLSSTENIAYPQRQVMHAEAKRRIGRTVAARVPDGCSLILNLGTTTEEVALALQQHKNL 131 Query: 160 HVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIE 219 HVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIE Sbjct: 132 HVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIE 191 Query: 220 MDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPP 279 MDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPP Sbjct: 192 MDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPP 251 Query: 280 ELATLLAETDVEVVIAK 296 ELA LLAETDVEVVIAK Sbjct: 252 ELAKLLAETDVEVVIAK 268 >ref|ZP_08274029.1| Glycerol-3-phosphate regulon repressor, DeoR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32493.1| Glycerol-3-phosphate regulon repressor, DeoR family [Oxalobacteraceae bacterium IMCC9480] Length = 253 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 184/250 (73%), Positives = 207/250 (82%) Query: 46 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSST 105 LNPRQ+ LLE VRK GTISVEELAQQL+VT QTVRRDVK M A LLARYHGGVGL SS Sbjct: 3 LNPRQRQLLEVVRKRGTISVEELAQQLDVTPQTVRRDVKQMELARLLARYHGGVGLPSSV 62 Query: 106 ENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVVTNN 165 ENI Y +RQ++++DAK+RI AARVP G SL++N+GTTTE VARAL +HK LHVVTNN Sbjct: 63 ENIDYSQRQILNSDAKQRIAAAAAARVPAGSSLLINIGTTTEAVARALMRHKGLHVVTNN 122 Query: 166 LNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLR 225 LNVA L+ NP EVI+ GG+VR RDRGIVGEATIDFIRQFKVDI IIG+SSIE DG LR Sbjct: 123 LNVATILSDNPDCEVIVTGGLVRGRDRGIVGEATIDFIRQFKVDISIIGVSSIEADGTLR 182 Query: 226 DFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELATLL 285 DFD+REVKVAQ IIEQ+R+VWLVAD+ KFGRQALV+MAHLSQIDVL TDA PP LA +L Sbjct: 183 DFDSREVKVAQAIIEQAREVWLVADSDKFGRQALVRMAHLSQIDVLITDAAPPEALAAVL 242 Query: 286 AETDVEVVIA 295 V VV+A Sbjct: 243 KAAQVTVVVA 252 >ref|YP_002006011.1| glycerol-3-phosphate regulon repressor, deor family [Cupriavidus taiwanensis LMG 19424] emb|CAQ69948.1| Glycerol-3-phosphate regulon repressor, DeoR family [Cupriavidus taiwanensis LMG 19424] Length = 256 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 161/252 (63%), Positives = 201/252 (79%), Gaps = 1/252 (0%) Query: 46 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLL-SS 104 LNPRQ LLE VR G S++ELA++ VT QTVRRDV + + +LAR+HGGV + S+ Sbjct: 3 LNPRQTALLEEVRTQGFASIDELARKFGVTLQTVRRDVNMLAENGMLARFHGGVRVEDST 62 Query: 105 TENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVVTN 164 TENIAY +RQV++A+ K RI R VA+ VP+GCSLILN+GTT EE+AR L H+ L V+TN Sbjct: 63 TENIAYRQRQVLNAEGKARIARAVASAVPEGCSLILNIGTTVEEIARGLVHHRGLRVITN 122 Query: 165 NLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVL 224 NLNVAN LA NP EVI+AGGV+R+RDRGIVGEAT++FIRQFKVDIG+IGIS IE DG L Sbjct: 123 NLNVANILADNPDCEVIVAGGVLRSRDRGIVGEATVEFIRQFKVDIGLIGISGIEADGTL 182 Query: 225 RDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELATL 284 RD+D REVKVA+TIIE SR+VWL ADASKF RQA+V++AH+SQ+D LFTDAP + Sbjct: 183 RDYDFREVKVARTIIEHSREVWLAADASKFNRQAMVELAHVSQVDRLFTDAPLAAPFDQI 242 Query: 285 LAETDVEVVIAK 296 LA++ V+ V+A+ Sbjct: 243 LADSGVKCVVAE 254 >ref|YP_001631198.1| hypothetical protein Bpet2588 [Bordetella petrii DSM 12804] emb|CAP42930.1| glpR [Bordetella petrii] Length = 268 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 160/250 (64%), Positives = 200/250 (80%), Gaps = 1/250 (0%) Query: 46 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSST 105 LNPRQ L+E VR G+ ++E LA+ +VT QTVRRDV + +A LL+R+HGGV + +ST Sbjct: 3 LNPRQSALVEMVRSQGSATIEALARHFDVTLQTVRRDVNLLAEAGLLSRFHGGVRIEAST 62 Query: 106 -ENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVVTN 164 ENIAY +RQ +HA+AK+RI R VA VPDGCSLILN+GTTTE +ARAL +H+ L V+TN Sbjct: 63 IENIAYRKRQGLHAEAKQRIARAVAQAVPDGCSLILNIGTTTEAIARALLRHRGLRVITN 122 Query: 165 NLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVL 224 NL+VA+ L+ NP E+I+AGGVVR RDRGIVGEAT+DFIRQFKVDIG+IGIS IE DG L Sbjct: 123 NLHVADILSDNPDCEIIVAGGVVRPRDRGIVGEATVDFIRQFKVDIGLIGISGIEADGTL 182 Query: 225 RDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELATL 284 RD+D REV+VA++IIEQSR+VWL AD+SKF RQA+V++AH+SQID FTDA P LA + Sbjct: 183 RDYDFREVRVARSIIEQSREVWLAADSSKFQRQAMVELAHISQIDRFFTDAYPQEPLAQV 242 Query: 285 LAETDVEVVI 294 L E+ V I Sbjct: 243 LQESGVRCEI 252 >ref|YP_003979521.1| glycerol-3-phosphate regulon repressor [Achromobacter xylosoxidans A8] gb|ADP16806.1| glycerol-3-phosphate regulon repressor [Achromobacter xylosoxidans A8] Length = 263 Score = 308 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 161/251 (64%), Positives = 200/251 (79%), Gaps = 1/251 (0%) Query: 46 LNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSST 105 LNPRQ L+E VR G+ S+EELA++ +VT QTVRRDV + +A LL+R+HGGV + +ST Sbjct: 3 LNPRQSALIEMVRAQGSASIEELAKRFDVTLQTVRRDVNILSEAGLLSRFHGGVRIEAST 62 Query: 106 -ENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVVTN 164 ENIAY +RQ +HA K+RI VA VPDGCSLILN+GTTTE +ARAL +H+ L V+TN Sbjct: 63 IENIAYRKRQGLHAAGKQRIAEAVARAVPDGCSLILNIGTTTEAIARALLRHRGLRVITN 122 Query: 165 NLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVL 224 NL+VA+ L+ NP EVI+AGGVVR+RDRGIVGEAT+DFIRQFKVDIG+IGIS IE DG L Sbjct: 123 NLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEATMDFIRQFKVDIGLIGISGIEADGTL 182 Query: 225 RDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELATL 284 RD+D REV+VA+TIIEQSR+VWL AD+SKF RQA+V++AH+SQID FTDA P LA + Sbjct: 183 RDYDFREVRVARTIIEQSREVWLAADSSKFKRQAMVELAHISQIDRFFTDAHPQEPLAQV 242 Query: 285 LAETDVEVVIA 295 L + V +A Sbjct: 243 LLDAGVRCDVA 253