BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2603.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775827.1| hypothetical protein Hsero_2420 [Herbaspiril... 245 3e-63 gb|ACY24858.1| conserved hypothetical protein [uncultured organism] 77 1e-12 ref|YP_001790895.1| hypothetical protein Lcho_1863 [Leptothrix c... 77 1e-12 ref|YP_001268390.1| hypothetical protein Pput_3078 [Pseudomonas ... 69 3e-10 ref|YP_001983074.1| hypothetical protein CJA_2614 [Cellvibrio ja... 69 3e-10 >ref|YP_003775827.1| hypothetical protein Hsero_2420 [Herbaspirillum seropedicae SmR1] gb|ADJ63919.1| hypothetical protein Hsero_2420 [Herbaspirillum seropedicae SmR1] Length = 194 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 157/194 (80%), Positives = 177/194 (91%) Query: 1 MKLFLDVTRISMIYLHIISMIAAAVSIVMVDFLVFNRQGSPSRARLIERLASIVLISLLA 60 MKLFLDVTRI+MIYLHII+MIAAAVSIVMVDFL FNRQGSP+ AR+I+RLA++VL+SLLA Sbjct: 1 MKLFLDVTRITMIYLHIIAMIAAAVSIVMVDFLAFNRQGSPALARMIDRLATVVLLSLLA 60 Query: 61 LWATGLTVIGIDTGFDPHLILQNGKLLAKLLVVTILSINGVGVHFYVLPQLANATRRSAV 120 LWATGLTVIGIDTGFDPHLI QNGKLLAKLLVVTILSINGVGVH YVLP+LA+ +R+A+ Sbjct: 61 LWATGLTVIGIDTGFDPHLIAQNGKLLAKLLVVTILSINGVGVHLYVLPRLADGGQRTAL 120 Query: 121 LGLTTLAIGVVSAVSWGYAAFLGIAKALSPHLGFAGFIALYVLALVIAWIVAVTIVRPRL 180 LG TL+IGVVSAVSWGYAAFLGIAKALSPHLGF GFIALY LA+ +AW+VAV IVRPRL Sbjct: 121 LGSLTLSIGVVSAVSWGYAAFLGIAKALSPHLGFGGFIALYALAIALAWMVAVLIVRPRL 180 Query: 181 LKPRQRQAQQAVVM 194 L+PR Q QA ++ Sbjct: 181 LRPRGLQKAQAAIL 194 >gb|ACY24858.1| conserved hypothetical protein [uncultured organism] Length = 201 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 12/175 (6%) Query: 12 MIYLHIISMIAAAVSIVMVDFLVFNRQGSPSRARLIERL---ASIVLISLLALWATGLTV 68 ++Y H+++ + +++ D + +G P A I+ L A I+ I+L+ LW +GL++ Sbjct: 5 IVYAHLLAACVSIGILLIQDLALAKSKGGPLSATAIKDLTKSAEIMFIALVVLWISGLSL 64 Query: 69 IGIDTGFDPHLILQNGKLLAKLLVVTILSINGVGVHFYVLPQLANATRRSAVLGLTTLA- 127 + + +P L N KL AK VV++L++NG+ +H++ P++ T R +LGL T Sbjct: 65 VLLGYLENPQQYLMNPKLWAKFTVVSVLTLNGIALHYFSFPRV---TSRRGLLGLPTFEQ 121 Query: 128 -----IGVVSAVSWGYAAFLGIAKALSPHLGFAGFIALYVLALVIAWIVAVTIVR 177 G +S+VSW +A +LGIA+ + + ++ + +Y LV A+IVA I+R Sbjct: 122 ILVTLTGALSSVSWLFACYLGIARPWNYTVDYSFVMFIYSGLLVGAFIVAGEILR 176 >ref|YP_001790895.1| hypothetical protein Lcho_1863 [Leptothrix cholodnii SP-6] gb|ACB34130.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 208 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 11/172 (6%) Query: 5 LDVTRISMIYLHIISMIAAAVSIVMVDFLVFNR--QGSPSRARL----IERLASIVLISL 58 ++ TR++++YLH+I+ A ++ D + + G +R+R +++L S V +L Sbjct: 1 MEFTRLAVVYLHLIACCVAIGLVLTSDIAMVRKLITGDTTRSRSDSEHLDQLQSTVSRAL 60 Query: 59 LALWATGLTVIGIDTGFDPHLILQNGKLLAKLLVVTILSINGVGVHFYVLPQLANATR-- 116 LALW TG+ V+ +D +N KL AK+ +V +L+INGV +H VLP + A Sbjct: 61 LALWITGIAVVALDASVKGWSYFENPKLQAKIGLVLLLTINGVLLHRTVLPLMQKAGSLL 120 Query: 117 --RSAVLGLTTLAIGVVSAVSWGYAAFLGIAKALSPHLGFAGFIALYVLALV 166 + A L LT A G VS V+W YAAF+G+ + L+ +A Y + +V Sbjct: 121 KLKPAQLHLTVFA-GSVSGVTWFYAAFMGVGRPLAWKYSLVELLAAYPVMIV 171 >ref|YP_001268390.1| hypothetical protein Pput_3078 [Pseudomonas putida F1] gb|ABQ79206.1| hypothetical protein Pput_3078 [Pseudomonas putida F1] Length = 247 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 8/181 (4%) Query: 5 LDVTRISMIYLHIISMIAA-----AVSIVMVDFLVFNRQGSPSRARLIERLASIVLISLL 59 +++ R+S+IY+H+++ A A MV L+ Q + R + RL V +L+ Sbjct: 44 MELVRLSVIYVHLLACCVAIGLVFASDAEMVRDLLKGHQQAGHDGRHMARLQKSVTNALM 103 Query: 60 ALWATGLTVIGIDTGFDPHLILQNGKLLAKLLVVTILSINGVGVHFYVLPQLANA-TRRS 118 LW TG VIGID N KL AK+++V +L+ NG+ +H YVLP L A + Sbjct: 104 FLWLTGAAVIGIDYLEKGMGYFANPKLHAKVIIVLLLTFNGMLLHRYVLPALLKAGSLLD 163 Query: 119 AVLGLTTLAI--GVVSAVSWGYAAFLGIAKALSPHLGFAGFIALYVLALVIAWIVAVTIV 176 +G+ A+ G +S VSW YAA LG+ + L+ + Y + +++ + + + Sbjct: 164 LNIGVRMFALFSGALSGVSWLYAAMLGVGRPLAWKYSLTELLLAYPVMILLGFALMAALT 223 Query: 177 R 177 + Sbjct: 224 Q 224 >ref|YP_001983074.1| hypothetical protein CJA_2614 [Cellvibrio japonicus Ueda107] gb|ACE84938.1| putative membrane protein [Cellvibrio japonicus Ueda107] Length = 210 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 12/174 (6%) Query: 12 MIYLHIISMIAAAVSIVMVDFLVFNRQGSPSRARLIE---RLASIVLISLLALWATGLTV 68 ++Y+H+++ A ++M D + +G P + I+ R A I+ +SL+ LW +GL + Sbjct: 5 IVYVHLLAACVAVGILLMQDLALAKTRGKPLSHQGIKELTRAAEIISLSLIVLWISGLAL 64 Query: 69 IGIDTGFDPHLILQNGKLLAKLLVVTILSINGVGVHFYVLPQLANATRRSAVLGLTTLA- 127 + I +P L N KL AK VV +L++NGV +H + P++ + +LGL + Sbjct: 65 VLIGYIENPQEYLLNQKLWAKFTVVAVLTLNGVVLHHFSFPRVVS---NRGILGLGNIEK 121 Query: 128 -----IGVVSAVSWGYAAFLGIAKALSPHLGFAGFIALYVLALVIAWIVAVTIV 176 G +S +SW +A +LGIA+ + + ++ + +Y+ L A I+A T++ Sbjct: 122 VLVVLSGAISTISWLFACYLGIARPWNHTVEYSFVMFVYLGLLGPACILACTLI 175