BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2600.p         (208 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775825.1| hypothetical protein Hsero_2418 [Herbaspiril...   284   7e-75
ref|YP_004235098.1| hypothetical protein Acav_2619 [Acidovorax a...    58   1e-06

>ref|YP_003775825.1| hypothetical protein Hsero_2418 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63917.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 152/220 (69%), Positives = 171/220 (77%), Gaps = 12/220 (5%)

Query: 1   MTDIEILSHDETEKLLPWFVNGTLNEEQQRAVREHLQSCPECSAAYSWACSERAAIYTEQ 60
           MT+IEI SHDE ++LLPWFVNGTL+E  Q+AVR HLQSCP C AAY WA  ERAAIY EQ
Sbjct: 1   MTEIEIHSHDEIQRLLPWFVNGTLDEAMQQAVRAHLQSCPSCHAAYEWASRERAAIYLEQ 60

Query: 61  EAVPDVEASLARMMARIEP------------RAPGKTSSFLGRMTSLLVGKPWMPVALAL 108
             VPDVEASLARM  RI P              P K +S   R+ +L  GKPW+PVA A+
Sbjct: 61  LPVPDVEASLARMRERIAPSKATQASPVGNQHGPKKGASVFSRILALYGGKPWVPVAFAI 120

Query: 109 QAVLVVALGLGVFMQSGVKQYVALSDADSGKMKIAIVFKPDTTVQRMQEILRAINANIVA 168
           QA L+VALG+GVFMQS VKQYVAL +AD GK+KIA+VFKPDTTVQRMQEILRA NANIVA
Sbjct: 121 QAALIVALGMGVFMQSEVKQYVALGNADIGKLKIALVFKPDTTVQRMQEILRATNANIVA 180

Query: 169 GPTVTFAYVVEMPAGEESSALRHFKQAPEISLVQSLGPGK 208
           GPTVTFAYVVE+PA EE+ ALRHF+ APE+SLVQSLG  K
Sbjct: 181 GPTVTFAYVVEVPASEEAGALRHFRLAPEVSLVQSLGQEK 220


>ref|YP_004235098.1| hypothetical protein Acav_2619 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX46531.1| hypothetical protein Acav_2619 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 19/214 (8%)

Query: 8   SHDETEKLLPWFVNGTLNEEQQRAVREHLQSCPECSAAYSWACSERAAIYTEQEA-VPDV 66
           SH  T++LLPW VNGT  EEQ+ AV  HL +C +C A  +     ++ +  +    +PD 
Sbjct: 17  SHLLTQELLPWIVNGTATEEQRAAVAGHLAACADCQAELALQERIQSGLQLQPATHIPDT 76

Query: 67  EASLARMMARIEPRAPGKTSSFLGRMTSLLVGKP----WMPVALALQAVLVVALGLGVFM 122
           E  L R+M RI+  A     +      S    +P    W   ALA  AVL  A    V  
Sbjct: 77  EEGLHRLMQRIDLDALCDQPA---PQASQPAPQPRRHGWSTYALAAVAVLQTAALALVGW 133

Query: 123 QSGVK---QYVALSDADS-----GKMKIAIVFKPDT--TVQRMQEILRAINANIVAGPTV 172
           ++  +   QY   S   +     G+ +  I   PD   T+      L      +VAGP  
Sbjct: 134 RTADQDPAQYRMFSSPQATAGTGGEAQGTIRAVPDDRLTLAAWNAALAGSGLQVVAGPNA 193

Query: 173 TFAYVVE-MPAGEESSALRHFKQAPEISLVQSLG 205
             AY++  +P    + AL   +  P + LV+  G
Sbjct: 194 MGAYMLAPLPGTSGTQALAQLRAMPGMRLVEPAG 227