BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2598.p         (222 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775823.1| hypothetical protein Hsero_2416 [Herbaspiril...   297   8e-79
gb|ADV55841.1| conserved hypothetical protein [Shewanella putref...    57   2e-06
ref|YP_962020.1| hypothetical protein Sputw3181_0615 [Shewanella...    56   3e-06
ref|YP_962270.1| hypothetical protein Sputw3181_0866 [Shewanella...    56   4e-06

>ref|YP_003775823.1| hypothetical protein Hsero_2416 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63915.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  297 bits (761), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 157/224 (70%), Positives = 186/224 (83%), Gaps = 2/224 (0%)

Query: 1   MPLRRYAAVALMMI--SADALAQMSKSISGSSDYWYRGISLSSGLPVVQATLNHDFRDGW 58
           M L R   +AL++I  S DA AQMSKS+  SSDYWYRGISLS+G PV Q TLN+DFRDGW
Sbjct: 1   MSLPRLGGLALVLIMGSLDASAQMSKSVGWSSDYWYRGISLSAGQPVFQGTLNYDFRDGW 60

Query: 59  YAGASGSGARNSNEASVGQLVLFGGNAMRLDATTSLDLGAHMTRLLDAPSLVFTELYAGI 118
           YAGASGS ARN+  A V Q VLFGG + RLDA TSLDLGAH+T L+DAPSL FTE+YAG+
Sbjct: 61  YAGASGSSARNAKGAGVAQAVLFGGVSKRLDAATSLDLGAHVTSLVDAPSLAFTEIYAGV 120

Query: 119 VKERYSLRLYYSPRYLGEKKQTTYLDFNMAHPLSSSVYLSLHLGWLESMAVESKRFSNRF 178
           +++ YSLRLYYSPRYLGEKKQTTY+DFN A+ LSSS YL LHLGWLE+M+VE   FSNR+
Sbjct: 121 IRQSYSLRLYYSPRYLGEKKQTTYIDFNTAYSLSSSWYLMLHLGWLEAMSVERTHFSNRY 180

Query: 179 DTRLGIGTYIGFWNCQVTYNMVRASEPLTVNAANRVILNLSYSF 222
           D RLG+G Y+GFWN Q+++N VR+SEPLTV+AANR +LN+SYSF
Sbjct: 181 DARLGMGAYVGFWNYQLSFNKVRSSEPLTVDAANRWVLNVSYSF 224


>gb|ADV55841.1| conserved hypothetical protein [Shewanella putrefaciens 200]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 6   YAAVAL---MMISADALAQMSKSISGSSDYWYRGISLSSGLPVVQATLNHDFRDGWYAGA 62
           Y+ +AL   M+++++A A +S +I G+S+Y +RG++ +     +Q  +++    G+YAG 
Sbjct: 6   YSVLALSTGMLLTSNAFAAVSANIGGTSNYLWRGVTQTDDAVAIQGGIDYSHDSGFYAGT 65

Query: 63  SGSGARNSNEASVGQLVLFGGNAMRLDATTSLDLGAHMTRLLDAP-SLVFTELYAGIVKE 121
             S     +E S  +L L+ G A  +    S D+G       DAP S+ F EL+  +  +
Sbjct: 66  WASNVDFGDETSY-ELDLYVGYAGNITEDISYDIGYLYYGYPDAPGSIDFGELHGAVTWK 124

Query: 122 RYSLRLYY----------SPRYLGEKKQTTYLDFNMAHPLSSSVYLSLHLGWLESMAVES 171
              L   +          SP    + K  +YL   ++ PL+  V LS+H G+     VE+
Sbjct: 125 WIELSYSHVINAGDDVAASPL---DNKDLSYLAATVSIPLTEKVSLSMHYGYSSGDVVEA 181


>ref|YP_962020.1| hypothetical protein Sputw3181_0615 [Shewanella sp. W3-18-1]
 ref|YP_001184837.1| hypothetical protein Sputcn32_3326 [Shewanella putrefaciens CN-32]
 gb|ABM23466.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
 gb|ABP77038.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 6   YAAVAL---MMISADALAQMSKSISGSSDYWYRGISLSSGLPVVQATLNHDFRDGWYAGA 62
           Y+ +AL   M+++++A A +S +I G+S+Y +RG++ +     +Q  +++    G+YAG 
Sbjct: 6   YSVLALSTGMLLTSNAFAAVSANIGGTSNYLWRGVTQTDDAVAIQGGIDYSHDSGFYAGT 65

Query: 63  SGSGARNSNEASVGQLVLFGGNAMRLDATTSLDLGAHMTRLLDAP-SLVFTELYAGIVKE 121
             S     +E S  +L L+ G A  +    S D+G       DAP S+ F EL+  +  +
Sbjct: 66  WASNVDFGDETSY-ELDLYVGYAGNITEDISYDIGYLYYGYPDAPGSIDFGELHGAVTWK 124

Query: 122 RYSLRLYY----------SPRYLGEKKQTTYLDFNMAHPLSSSVYLSLHLGWLESMAVES 171
              L   +          SP    + K  +YL   ++ PL+  V LS+H G+     VE+
Sbjct: 125 WIELSYSHVINAGDDVAASPL---DNKDLSYLAATVSIPLTEKVSLSVHYGYSTGDVVEA 181


>ref|YP_962270.1| hypothetical protein Sputw3181_0866 [Shewanella sp. W3-18-1]
 gb|ABM23716.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
          Length = 256

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 20/192 (10%)

Query: 16  ADALAQMSKSISGSSDYWYRGISLSSGLPVVQA--TLNHDFRDGWYAGASGSGARNSNEA 73
            +A  Q   S+  +SDY +RGIS +   P VQA  TL+HD   GWY    GS     + +
Sbjct: 39  GNASWQSQGSVMLTSDYAFRGISQTDEGPAVQAGYTLSHD--SGWYGSLWGSNIEFGDGS 96

Query: 74  SVGQLVLFGGNAMRLDATTSLDLGA-HMTRLLDAPSLVFTELYAGIVKERYSLRLYYSPR 132
              +L L  G A   D   + DLG        D   L + E+YA +      L L YSP 
Sbjct: 97  L--ELDLSAGWAKDWDNGLTTDLGVIRYQYSQDDTDLSYNEIYAVVSYADAKLGLVYSPD 154

Query: 133 YLGEK-KQTTYLDFNMAHPLSSSVYLSLHLGWLESMAVESKRFSNRFDTRLGIGTYIG-- 189
           Y GE      Y+  +    L S+V L+LHLG        S  F+++ D    +G+ +   
Sbjct: 155 YFGENVDDFQYVYVSYEPQLFSNVSLALHLG--------SNFFASQQDMAQFLGSMVADN 206

Query: 190 --FWNCQVTYNM 199
             +W+ +V  N+
Sbjct: 207 NHYWDWRVGLNL 218