BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2597.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774382.1| branched-chain amino acid ABC transporter AT... 398 e-109 ref|YP_004155771.1| ABC transporter [Variovorax paradoxus EPS] >... 304 8e-81 ref|ZP_07674382.1| branched-chain amino acid ABC transporter, AT... 281 7e-74 ref|YP_002547041.1| ABC transporter nucleotide binding/ATPase pr... 279 4e-73 ref|NP_105923.1| ABC transporter, ATP-binding protein [Mesorhizo... 278 6e-73 >ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62474.1| ABC-type branched-chain amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 232/253 (91%), Positives = 241/253 (95%) Query: 36 MSAPLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 95 MSAPLLQIE+IEVRYQGALLAL++VSL+VQAGEIHALLGANGAGKSTTLKAVSNLLAAQR Sbjct: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 Query: 96 GQVRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAV 155 GQVR G IL+EGREV RSSPAELVRQGLAQVLEGRHCFASL+VEENLLTGWPAHFTRR V Sbjct: 61 GQVRAGHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTV 120 Query: 156 LREALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 215 LR AL+RIYAFFP LHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV Sbjct: 121 LRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 180 Query: 216 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQ 275 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHG SVLS EA ALR+RA IQ Sbjct: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQ 240 Query: 276 AFYFGEGRAWQAA 288 +FYFGEGR QAA Sbjct: 241 SFYFGEGRGLQAA 253 >ref|YP_004155771.1| ABC transporter [Variovorax paradoxus EPS] gb|ADU37660.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 256 Score = 304 bits (779), Expect = 8e-81, Method: Composition-based stats. Identities = 174/247 (70%), Positives = 203/247 (82%) Query: 36 MSAPLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 95 M+ PLL+IE++E YQ ++ AL VSL+V+AGEIHALLGANGAGKSTTLKAVSNLL A+R Sbjct: 1 MTTPLLRIEAVEAAYQRSIAALHGVSLEVRAGEIHALLGANGAGKSTTLKAVSNLLPAER 60 Query: 96 GQVRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAV 155 GQV GRI+F+G + RSSPA+LVR GL QVLEGRHCF +L+VEENLLTG RR+ Sbjct: 61 GQVTAGRIVFDGHDTGRSSPADLVRLGLVQVLEGRHCFRTLTVEENLLTGALGRSARRSE 120 Query: 156 LREALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 215 E L ++YA FP L RR++ AGLCSGGEQQM AIGRAL+SRPRLLVLDEPSMGLAP V Sbjct: 121 AAEDLAKVYAIFPKLKDRRKTPAGLCSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPLV 180 Query: 216 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQ 275 V DIF QL RLNRE G+++LVAEQNS VALQYA RATVL+ G +VLSG+A ALR+RA IQ Sbjct: 181 VRDIFEQLRRLNREAGLSILVAEQNSTVALQYADRATVLDAGVAVLSGDAEALRQRADIQ 240 Query: 276 AFYFGEG 282 +FYFGEG Sbjct: 241 SFYFGEG 247 >ref|ZP_07674382.1| branched-chain amino acid ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67202.1| branched-chain amino acid ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA] Length = 279 Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 161/253 (63%), Positives = 193/253 (76%) Query: 37 SAPLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRG 96 SA LL++ +E YQ A++AL +V+L VQ GE+HALLGANGAGKS+TLKA+SNLL +RG Sbjct: 6 SAVLLRVNGVEATYQNAIVALHNVNLTVQRGEVHALLGANGAGKSSTLKAISNLLVPERG 65 Query: 97 QVRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVL 156 QV G I+F+G +VAR++PA+LVR GL QVLEGR CF +LS+E NL+TG RA Sbjct: 66 QVTAGTIVFDGHDVARTTPAQLVRLGLVQVLEGRRCFPNLSIESNLVTGALGRSASRAET 125 Query: 157 REALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVV 216 L+R+YA FP L RRR AGL SGGEQQM AIGRAL+SRPRLLVLDEPSMGLAP VV Sbjct: 126 AADLERVYAIFPRLKARRRVAAGLTSGGEQQMAAIGRALMSRPRLLVLDEPSMGLAPLVV 185 Query: 217 ADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQA 276 DIFA+L +LNRE+G+++LVAEQNS VALQYA R TVLE G +VL+ A AL +R IQ Sbjct: 186 QDIFARLRQLNREDGLSILVAEQNSTVALQYADRTTVLEAGVTVLNDTAEALGQREDIQH 245 Query: 277 FYFGEGRAWQAAA 289 FYFG A QA A Sbjct: 246 FYFGRDVAHQAPA 258 >ref|YP_002547041.1| ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) [Agrobacterium vitis S4] gb|ACM38325.1| ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) [Agrobacterium vitis S4] Length = 257 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 152/244 (62%), Positives = 186/244 (76%) Query: 38 APLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQ 97 A LLQ++ + Y A+ AL VS + GEI ALLGANGAGK+T LKAVSNLL+A+RGQ Sbjct: 4 ARLLQVDGLHATYNHAITALHGVSFSLARGEILALLGANGAGKTTALKAVSNLLSAERGQ 63 Query: 98 VRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVLR 157 + G I F+G +V ++SPA LVR GL QVLEGRHCF SLSVEENL G + RA + Sbjct: 64 INAGSIHFDGVDVTKTSPAALVRAGLVQVLEGRHCFHSLSVEENLTCGGLGRSSSRAEIA 123 Query: 158 EALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVA 217 L+RIY FP L ++RR+L+GL SGGEQQM A+GRAL+SRPRLLVLDEPSMGLAP VV Sbjct: 124 NDLERIYGLFPRLKEKRRTLSGLTSGGEQQMTAVGRALMSRPRLLVLDEPSMGLAPIVVQ 183 Query: 218 DIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQAF 277 DIF L RLNREEG+++LVAEQNSA+AL YAHRAT+LE+G VL+G A +RER +++F Sbjct: 184 DIFRTLRRLNREEGLSILVAEQNSAIALTYAHRATILENGKDVLTGTAREIRERDDVKSF 243 Query: 278 YFGE 281 Y G+ Sbjct: 244 YLGQ 247 >ref|NP_105923.1| ABC transporter, ATP-binding protein [Mesorhizobium loti MAFF303099] dbj|BAB51709.1| ABC transporter, ATP-binding protein [Mesorhizobium loti MAFF303099] Length = 268 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 152/247 (61%), Positives = 189/247 (76%) Query: 40 LLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQVR 99 +L +++I Y A+ AL VS +++ GEI ALLGANGAGK+TTLKAVSNLL A+RGQV Sbjct: 7 ILAVDTIHATYNHAITALHGVSFEIRRGEILALLGANGAGKTTTLKAVSNLLPAERGQVN 66 Query: 100 GGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVLREA 159 G I ++G +V+R P +LVR GL VLEGRHCF SL+VEENL+ G RRA + + Sbjct: 67 AGTICYDGADVSRRKPGDLVRAGLVPVLEGRHCFKSLTVEENLVAGGIGRSGRRAEINQD 126 Query: 160 LDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADI 219 L+RIYA+FP L ++RR+L+GL SGGEQQM AIGRAL+SRPRLLVLDEPSMGLAP +V DI Sbjct: 127 LERIYAYFPRLKEKRRTLSGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPLIVQDI 186 Query: 220 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQAFYF 279 F L +LNRE G+++LVAEQNSAVAL+YA ATVLE+G SVLSG A LR+R ++AFY Sbjct: 187 FQTLRKLNRETGLSILVAEQNSAVALRYADHATVLENGVSVLSGAAADLRQREDVRAFYL 246 Query: 280 GEGRAWQ 286 G+ Q Sbjct: 247 GQSTTGQ 253