BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2596.p (494 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774381.1| dibenzothiophene desulfurization flavin redu... 768 0.0 ref|YP_004233312.1| acyl-CoA dehydrogenase type 2 domain-contain... 625 e-177 ref|YP_969249.1| acyl-CoA dehydrogenase type 2 [Acidovorax citru... 619 e-175 ref|ZP_08529174.1| acyl-CoA dehydrogenase [Agrobacterium sp. ATC... 595 e-168 ref|NP_396455.2| acyl-CoA dehydrogenase [Agrobacterium tumefacie... 592 e-167 >ref|YP_003774381.1| dibenzothiophene desulfurization flavin reductase [Herbaspirillum seropedicae SmR1] gb|ADJ62473.1| dibenzothiophene desulfurization flavin reductase protein [Herbaspirillum seropedicae SmR1] Length = 419 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 401/419 (95%), Positives = 410/419 (97%) Query: 76 MSAVLAPSTQSYSPASGPVPGLPRATQPAHVIRDDAEAIAVAHTLAKRLAEGASERDQLR 135 MSAVLAPS S S A+ PVPGLPRA+QPAHVIRDDAEAIAVAH LA RLA+GASERDQLR Sbjct: 1 MSAVLAPSLHSTSSAAAPVPGLPRASQPAHVIRDDAEAIAVAHALAPRLAQGASERDQLR 60 Query: 136 RWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVA 195 RWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVA Sbjct: 61 RWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVA 120 Query: 196 AVRTVSDPEQQQRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVSGKKFYST 255 AVRTVSDPEQQ+RFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHVIV+GKKFYST Sbjct: 121 AVRTVSDPEQQRRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVTGKKFYST 180 Query: 256 GALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVILDQVKVPKT 315 GALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVI+DQVKVPKT Sbjct: 181 GALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVIIDQVKVPKT 240 Query: 316 HLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWED 375 HLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWED Sbjct: 241 HLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWED 300 Query: 376 PYSIQAVGDLQIRLHASEALLERAGRAIDVAVAAPDAENVARAQILTAEAKVLSTEIAIH 435 PYSIQA+GDLQIRLHASEALLERAGRAID AVAAPDA++VA AQILTAEAKVLSTEIAIH Sbjct: 301 PYSIQAIGDLQIRLHASEALLERAGRAIDAAVAAPDAQSVAHAQILTAEAKVLSTEIAIH 360 Query: 436 ATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS 494 ATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS Sbjct: 361 ATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS 419 >ref|YP_004233312.1| acyl-CoA dehydrogenase type 2 domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44745.1| Acyl-CoA dehydrogenase type 2 domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 429 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 336/429 (78%), Positives = 374/429 (87%), Gaps = 10/429 (2%) Query: 76 MSAVL-APST---------QSYSPASGPVPGLPRATQPAHVIRDDAEAIAVAHTLAKRLA 125 MSAVL +P+T Q+ PVPGLPR PAHVIRDDAEAIA+AH LA+R Sbjct: 1 MSAVLQSPATEQPVRPHALQAALQPGQPVPGLPRPKAPAHVIRDDAEAIAIAHGLAERFR 60 Query: 126 EGASERDQLRRWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQ 185 EGA+ RD+ R WPVEEI+AYSQSGLWAINVPRA GGAEVSYATLAEVIAIISAADPS+GQ Sbjct: 61 EGAALRDRDRLWPVEEIDAYSQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQ 120 Query: 186 ITQNHLGFVAAVRTVSDPEQQQRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHV 245 ITQNHLG VAA+RTVSD QQ+ F + L G R+GNAFSESGS+RAADFETRFV+ GDHV Sbjct: 121 ITQNHLGIVAAIRTVSDEAQQRLLFGEILAGARFGNAFSESGSRRAADFETRFVEDGDHV 180 Query: 246 IVSGKKFYSTGALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTV 305 +VSG+KFYS+GALLAHYVPIVAND + R WY +AER+APGL+VIDDWS+FGQRTTLSGTV Sbjct: 181 VVSGRKFYSSGALLAHYVPIVANDPQGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV 240 Query: 306 ILDQVKVPKTHLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWI 365 ++D+V+VP+THL+PA+KGY PSADGAIFQIIQAAVDVGIAR AI DTQDFVRTK+RPW+ Sbjct: 241 LIDRVRVPRTHLVPAWKGYDRPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTKTRPWV 300 Query: 366 DSQRDHAWEDPYSIQAVGDLQIRLHASEALLERAGRAIDVAVAAPDAENVARAQILTAEA 425 DSQRD A EDPY+I AVGDLQIRLHASEALLERAGRAID A+A PDA+ VA AQI AEA Sbjct: 301 DSQRDTAAEDPYTIHAVGDLQIRLHASEALLERAGRAIDRALATPDADTVAAAQIAVAEA 360 Query: 426 KVLSTEIAIHATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNG 485 KVLSTEIA+ A NKLFELAGTRSTLGQY+LDRHWRNARTHTLHDPVRWKYAIVGNY+LNG Sbjct: 361 KVLSTEIALQAANKLFELAGTRSTLGQYHLDRHWRNARTHTLHDPVRWKYAIVGNYHLNG 420 Query: 486 VKPPFHAWS 494 VKPPFHAWS Sbjct: 421 VKPPFHAWS 429 >ref|YP_969249.1| acyl-CoA dehydrogenase type 2 [Acidovorax citrulli AAC00-1] gb|ABM31475.1| Acyl-CoA dehydrogenase, type 2, C-terminal domain protein [Acidovorax citrulli AAC00-1] Length = 429 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 331/429 (77%), Positives = 371/429 (86%), Gaps = 10/429 (2%) Query: 76 MSAVLA-PST---------QSYSPASGPVPGLPRATQPAHVIRDDAEAIAVAHTLAKRLA 125 MSAVL PST Q+ PVPGLPR PAHV+RDDAEAIA+AH LA+R Sbjct: 1 MSAVLQNPSTEQPVRPHALQAAHRPGQPVPGLPRPPAPAHVVRDDAEAIAIAHGLAERFR 60 Query: 126 EGASERDQLRRWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQ 185 EGA+ RD+ R WPVEEI+AYSQSGLWAINVPRA GGAEVSYATLAEVIAIISAADPS+GQ Sbjct: 61 EGAALRDRDRLWPVEEIDAYSQSGLWAINVPRAHGGAEVSYATLAEVIAIISAADPSIGQ 120 Query: 186 ITQNHLGFVAAVRTVSDPEQQQRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHV 245 ITQNHLG AA+RTVSD QQ+ F + L G R+GNAFSESGS+RAADFETRF++ GDHV Sbjct: 121 ITQNHLGIAAAIRTVSDEAQQRLLFGEILGGARFGNAFSESGSRRAADFETRFIEDGDHV 180 Query: 246 IVSGKKFYSTGALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTV 305 +V+G+KFYS+GALLAHYVPIVAND R WY +AER+APGL+VIDDWS+FGQRTTLSGTV Sbjct: 181 VVTGRKFYSSGALLAHYVPIVANDPRGRAWYAIAERDAPGLSVIDDWSSFGQRTTLSGTV 240 Query: 306 ILDQVKVPKTHLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWI 365 ++D+V+VP+THL+PA+KGY PSADGAIFQIIQAAVDVGIAR AI DTQDFVRT++RPW+ Sbjct: 241 LIDRVRVPRTHLVPAWKGYERPSADGAIFQIIQAAVDVGIARNAIEDTQDFVRTRTRPWV 300 Query: 366 DSQRDHAWEDPYSIQAVGDLQIRLHASEALLERAGRAIDVAVAAPDAENVARAQILTAEA 425 DSQRD A EDPY+I AVGDLQIRLHASEALLERAGRAID A+AAPDA+ VA AQI AEA Sbjct: 301 DSQRDTAAEDPYTIHAVGDLQIRLHASEALLERAGRAIDRALAAPDADTVAAAQIAVAEA 360 Query: 426 KVLSTEIAIHATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNG 485 KVLSTEIA+ A NKLFEL GTRSTLGQY+LDRHWRNARTHTLHDPVRWKYAIVGNY+LNG Sbjct: 361 KVLSTEIALQAANKLFELGGTRSTLGQYHLDRHWRNARTHTLHDPVRWKYAIVGNYHLNG 420 Query: 486 VKPPFHAWS 494 V+PPFHAWS Sbjct: 421 VRPPFHAWS 429 >ref|ZP_08529174.1| acyl-CoA dehydrogenase [Agrobacterium sp. ATCC 31749] gb|EGL64125.1| acyl-CoA dehydrogenase [Agrobacterium sp. ATCC 31749] Length = 415 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 296/401 (73%), Positives = 348/401 (86%) Query: 94 VPGLPRATQPAHVIRDDAEAIAVAHTLAKRLAEGASERDQLRRWPVEEIEAYSQSGLWAI 153 VP +PR T+PAH+IR DAEAI VA +A +A GA+ RD+ R WPV+E++A+SQSGLW+I Sbjct: 15 VPAVPRPTEPAHIIRSDAEAIEVAKIVAAEIAPGAALRDRDRIWPVKELDAFSQSGLWSI 74 Query: 154 NVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVAAVRTVSDPEQQQRFFADF 213 NVP+ FGG EVSYATLA+VI I+SAAD S+GQI QNHLG VAA+RTVSD QQ+ FA+ Sbjct: 75 NVPKKFGGPEVSYATLAKVIEIVSAADSSIGQIAQNHLGVVAAIRTVSDEAQQKLLFAEV 134 Query: 214 LRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVSGKKFYSTGALLAHYVPIVANDEENR 273 LRG R+GNAFSE GSKRAADFET+FVDAGDHVIV+G+KFYS+GALLAH VPIVA D+E R Sbjct: 135 LRGTRFGNAFSEFGSKRAADFETKFVDAGDHVIVNGQKFYSSGALLAHLVPIVALDDEGR 194 Query: 274 TWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVILDQVKVPKTHLIPAYKGYLEPSADGAI 333 WY +AER+APGLTVIDDWS+FGQRTTLSGTVIL+ VKVPKT+L+P YKGY EP+ADGAI Sbjct: 195 AWYAIAERDAPGLTVIDDWSSFGQRTTLSGTVILNNVKVPKTYLVPGYKGYAEPTADGAI 254 Query: 334 FQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWEDPYSIQAVGDLQIRLHASE 393 FQIIQ AVD GIARAAI +T FVRTKSR W+DS DHAW+DPY+IQAVGDL +RLHA++ Sbjct: 255 FQIIQVAVDTGIARAAIDETVSFVRTKSRAWVDSGVDHAWDDPYTIQAVGDLTLRLHAAQ 314 Query: 394 ALLERAGRAIDVAVAAPDAENVARAQILTAEAKVLSTEIAIHATNKLFELAGTRSTLGQY 453 ALLE+AG AID A+ P+AE VA AQ++TAEAK+L+TEIAI ATNKLFELAGTRSTL ++ Sbjct: 315 ALLEKAGYAIDRAIQNPNAETVAEAQVVTAEAKILATEIAIAATNKLFELAGTRSTLAEH 374 Query: 454 NLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS 494 +LDRHWRNARTHTLHDPVRWKY+I+G Y+LNG KPP HAWS Sbjct: 375 HLDRHWRNARTHTLHDPVRWKYSILGKYFLNGEKPPLHAWS 415 >ref|NP_396455.2| acyl-CoA dehydrogenase [Agrobacterium tumefaciens str. C58] gb|AAK90896.2| acyl-CoA dehydrogenase [Agrobacterium tumefaciens str. C58] Length = 415 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 295/401 (73%), Positives = 347/401 (86%) Query: 94 VPGLPRATQPAHVIRDDAEAIAVAHTLAKRLAEGASERDQLRRWPVEEIEAYSQSGLWAI 153 VP +PR T+ AH+IR DAEAI VA +A +A GA+ RD+ R WPV+E++A+SQSGLW+I Sbjct: 15 VPAVPRPTERAHIIRSDAEAIEVAKIVAAEIAPGAALRDRDRIWPVKELDAFSQSGLWSI 74 Query: 154 NVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVAAVRTVSDPEQQQRFFADF 213 NVP+ FGG EVSYATLA+VI I+SAAD S+GQI QNHLG VAA+RTVSD QQ+ FA+ Sbjct: 75 NVPKKFGGPEVSYATLAKVIEIVSAADSSIGQIAQNHLGVVAAIRTVSDEAQQKLLFAEV 134 Query: 214 LRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVSGKKFYSTGALLAHYVPIVANDEENR 273 LRG R+GNAFSE GSKRAADFET+FVDAGDHVIV+G+KFYS+GALLAH VPIVA D+E R Sbjct: 135 LRGTRFGNAFSEFGSKRAADFETKFVDAGDHVIVNGQKFYSSGALLAHLVPIVALDDEGR 194 Query: 274 TWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVILDQVKVPKTHLIPAYKGYLEPSADGAI 333 WY +AER+APGLTVIDDWS+FGQRTTLSGTVIL+ VKVPKT+L+P YKGY EP+ADGAI Sbjct: 195 AWYAIAERDAPGLTVIDDWSSFGQRTTLSGTVILNNVKVPKTYLVPGYKGYAEPTADGAI 254 Query: 334 FQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWEDPYSIQAVGDLQIRLHASE 393 FQIIQ AVD GIARAAI +T FVRTKSR W+DS DHAW+DPY+IQAVGDL +RLHA++ Sbjct: 255 FQIIQVAVDTGIARAAIDETVSFVRTKSRAWVDSGVDHAWDDPYTIQAVGDLTLRLHAAQ 314 Query: 394 ALLERAGRAIDVAVAAPDAENVARAQILTAEAKVLSTEIAIHATNKLFELAGTRSTLGQY 453 ALLE+AG AID A+ P+AE VA AQ++TAEAK+L+TEIAI ATNKLFELAGTRSTL ++ Sbjct: 315 ALLEKAGYAIDRAIQNPNAETVAEAQVVTAEAKILATEIAIAATNKLFELAGTRSTLAEH 374 Query: 454 NLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS 494 +LDRHWRNARTHTLHDPVRWKY+I+G Y+LNG KPP HAWS Sbjct: 375 HLDRHWRNARTHTLHDPVRWKYSILGKYFLNGEKPPLHAWS 415