BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2595.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774380.1| hypothetical protein Hsero_0955 [Herbaspiril... 835 0.0 ref|YP_004155772.1| hypothetical protein Varpa_3476 [Variovorax ... 781 0.0 ref|ZP_07674384.1| branched-chain amino acid ABC transporter [Ra... 768 0.0 ref|YP_004233313.1| hypothetical protein Acav_0823 [Acidovorax a... 739 0.0 ref|YP_001240251.1| hypothetical protein BBta_4295 [Bradyrhizobi... 713 0.0 >ref|YP_003774380.1| hypothetical protein Hsero_0955 [Herbaspirillum seropedicae SmR1] gb|ADJ62472.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 438 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 423/438 (96%), Positives = 430/438 (98%) Query: 1 MLHAKLLKTFILSAALLSAGLQHAHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN 60 MLH+K+LK L+ LL+AGLQ A ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN Sbjct: 1 MLHSKILKAIALTTVLLTAGLQQARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN 60 Query: 61 LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK 120 LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK Sbjct: 61 LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK 120 Query: 121 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGSDKLKGKKIVVLYH 180 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGG+DKLKGKKIVVLYH Sbjct: 121 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYH 180 Query: 181 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP 240 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP Sbjct: 181 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP 240 Query: 241 VALKTAQKSGFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV 300 VALKTAQKSGFPAD IIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV Sbjct: 241 VALKTAQKSGFPADRIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV 300 Query: 301 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLNID 360 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQA+FGKRTLTGDEIRWGLENLNID Sbjct: 301 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQARFGKRTLTGDEIRWGLENLNID 360 Query: 361 QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWNVVSDWIAPDWKLLRPIIEKS 420 QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQW+VVSDWIAPDWKLLRPIIEKS Sbjct: 361 QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKS 420 Query: 421 ALAYAKEKNIKVRKSIDD 438 ALAYAKEKNIKVRKSIDD Sbjct: 421 ALAYAKEKNIKVRKSIDD 438 >ref|YP_004155772.1| hypothetical protein Varpa_3476 [Variovorax paradoxus EPS] gb|ADU37661.1| hypothetical protein Varpa_3476 [Variovorax paradoxus EPS] Length = 440 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 396/440 (90%), Positives = 414/440 (94%), Gaps = 2/440 (0%) Query: 1 MLHAKLLKTFILSAALLSAGLQHAHAD--EQFFPLQSYRVGPYAAGGTGFFGGFIDYLNL 58 M K LKT L+ L AGLQ AHAD EQFFPLQSYRVGPYAAGGTGFFGGFIDYLNL Sbjct: 1 MSFIKHLKTAALAVTLSVAGLQFAHADGNEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNL 60 Query: 59 VNLRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTA 118 VN RDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRP IATWNPLSVGIAYAL+DRVTA Sbjct: 61 VNTRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPGIATWNPLSVGIAYALIDRVTA 120 Query: 119 DKVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGSDKLKGKKIVVL 178 DKVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIA KEGG+DKLKGKKIVVL Sbjct: 121 DKVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIAGKEGGTDKLKGKKIVVL 180 Query: 179 YHGSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVM 238 YHGSPYGKETIP+Y+LL++KYGF+LQQIEVPHPGN+QQ+QWL IRR KPDYVVLRGWGVM Sbjct: 181 YHGSPYGKETIPVYELLAKKYGFTLQQIEVPHPGNEQQSQWLTIRRVKPDYVVLRGWGVM 240 Query: 239 NPVALKTAQKSGFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQK 298 NPVALKTAQK+GFP DHI+GNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQ+I K Sbjct: 241 NPVALKTAQKTGFPVDHIVGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQDITK 300 Query: 299 TVYGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLN 358 VYGAGKGNLQD KRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENL Sbjct: 301 IVYGAGKGNLQDTKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLK 360 Query: 359 IDQARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWNVVSDWIAPDWKLLRPIIE 418 ID+AR AALGAKGLFHSI+VTWDNHEGDG VAFQQWDG +WNVVSDWIAPDWKLLRPIIE Sbjct: 361 IDEARAAALGAKGLFHSINVTWDNHEGDGRVAFQQWDGSKWNVVSDWIAPDWKLLRPIIE 420 Query: 419 KSALAYAKEKNIKVRKSIDD 438 KS+LAYAKEKN+KVRKSIDD Sbjct: 421 KSSLAYAKEKNVKVRKSIDD 440 >ref|ZP_07674384.1| branched-chain amino acid ABC transporter [Ralstonia sp. 5_7_47FAA] gb|EFP67204.1| branched-chain amino acid ABC transporter [Ralstonia sp. 5_7_47FAA] Length = 443 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 389/439 (88%), Positives = 412/439 (93%), Gaps = 5/439 (1%) Query: 5 KLLKTFILSAALLSAGL-----QHAHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLV 59 + +K +L+ AL +GL Q AHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLV Sbjct: 5 RTIKMALLTGALALSGLTGLGVQAAHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLV 64 Query: 60 NLRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTAD 119 N RDGGVGGVKLTWEEGETQYEVERGVEVYERLK P IATWNPLSVGIAYALLDRVTAD Sbjct: 65 NTRDGGVGGVKLTWEEGETQYEVERGVEVYERLKTHPGIATWNPLSVGIAYALLDRVTAD 124 Query: 120 KVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGSDKLKGKKIVVLY 179 KVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYI SKEGG DKLKGKKIVVLY Sbjct: 125 KVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIGSKEGGVDKLKGKKIVVLY 184 Query: 180 HGSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMN 239 HGSPYGKETIPIY+LL++KYGF++QQIEVPHPGN+QQ+QWLAIRRAKPDYVVLRGWGVMN Sbjct: 185 HGSPYGKETIPIYELLAKKYGFTVQQIEVPHPGNEQQSQWLAIRRAKPDYVVLRGWGVMN 244 Query: 240 PVALKTAQKSGFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKT 299 PVALKTAQK+GFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPV+Q+I KT Sbjct: 245 PVALKTAQKTGFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVIQQITKT 304 Query: 300 VYGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLNI 359 +Y GKGNLQD KRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDE+RWGLENL I Sbjct: 305 LYDHGKGNLQDKKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEVRWGLENLKI 364 Query: 360 DQARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWNVVSDWIAPDWKLLRPIIEK 419 D+AR AALGAKGLFHSI+VTWDNHEGDG VAFQQWDG +WNV+SDWIAPDWKLLRPIIEK Sbjct: 365 DEARAAALGAKGLFHSINVTWDNHEGDGRVAFQQWDGTKWNVISDWIAPDWKLLRPIIEK 424 Query: 420 SALAYAKEKNIKVRKSIDD 438 S+LAYAKEKNIKVR SI+D Sbjct: 425 SSLAYAKEKNIKVRTSIND 443 >ref|YP_004233313.1| hypothetical protein Acav_0823 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44746.1| hypothetical protein Acav_0823 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 439 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 362/418 (86%), Positives = 394/418 (94%) Query: 21 LQHAHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRDGGVGGVKLTWEEGETQY 80 +Q ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRDGGVGGVKLTW EGETQY Sbjct: 22 VQPVRADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRDGGVGGVKLTWAEGETQY 81 Query: 81 EVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADKVPLLTINHGRTDTTDGRVFK 140 EVERGVEVYER K RP IA WNPLSVGIAYA+LDRVTADKVPL+TINHGRTDTTDGRVFK Sbjct: 82 EVERGVEVYERFKTRPGIAAWNPLSVGIAYAMLDRVTADKVPLVTINHGRTDTTDGRVFK 141 Query: 141 YIFPLLLNPYSETSGIVNYIASKEGGSDKLKGKKIVVLYHGSPYGKETIPIYKLLSEKYG 200 Y FPLLLNPYSETSGIVNYIA+KEGG+DKLKG+KIVVLYHGSPYGKETIPIY+LL+++YG Sbjct: 142 YAFPLLLNPYSETSGIVNYIAAKEGGADKLKGRKIVVLYHGSPYGKETIPIYELLAKQYG 201 Query: 201 FSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNPVALKTAQKSGFPADHIIGNV 260 F+LQQIEVPHPGN+QQ+QWLAIRRA+PDYVVLRGWGVMNPVAL+TAQK+GFPA IIGNV Sbjct: 202 FTLQQIEVPHPGNEQQSQWLAIRRARPDYVVLRGWGVMNPVALRTAQKTGFPATRIIGNV 261 Query: 261 WSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTVYGAGKGNLQDPKRIGSVYHN 320 WSNSEEDV+PAGDAAKGY AITTVAAG QYPVLQEI+KTVY AGKGNL+D +RIGSVYHN Sbjct: 262 WSNSEEDVLPAGDAAKGYTAITTVAAGDQYPVLQEIRKTVYAAGKGNLEDQRRIGSVYHN 321 Query: 321 LGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLNIDQARTAALGAKGLFHSIHVTW 380 LGVLNGILNVEA+RIAQAKFG+RTLTGDE+RWG ENL ID+AR AALGAKGLFHSIHVTW Sbjct: 322 LGVLNGILNVEAVRIAQAKFGRRTLTGDEVRWGFENLRIDEARAAALGAKGLFHSIHVTW 381 Query: 381 DNHEGDGLVAFQQWDGKQWNVVSDWIAPDWKLLRPIIEKSALAYAKEKNIKVRKSIDD 438 DNHEGDG VAFQQWDG+QW VVSDWIAPDWKLLRP+IE S+ AYA+++ I +R+SIDD Sbjct: 382 DNHEGDGRVAFQQWDGRQWKVVSDWIAPDWKLLRPLIEASSEAYARDRKIPLRRSIDD 439 >ref|YP_001240251.1| hypothetical protein BBta_4295 [Bradyrhizobium sp. BTAi1] gb|ABQ36345.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 447 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 357/439 (81%), Positives = 395/439 (89%), Gaps = 4/439 (0%) Query: 3 HAKLLKTFILSAAL---LSAGLQHAHADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLV 59 HAKL L AAL L+ L A ADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNL+ Sbjct: 6 HAKLAVRLSLGAALAFGLATSLP-AKADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLI 64 Query: 60 NLRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTAD 119 N+RDGGV GVKLTW+EGETQYEVERGVEVYERLK RP +A WNPLSVGIAYA++DR++ D Sbjct: 65 NIRDGGVNGVKLTWDEGETQYEVERGVEVYERLKGRPGVAAWNPLSVGIAYAMIDRISKD 124 Query: 120 KVPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGSDKLKGKKIVVLY 179 KVPL+TINHGRTD+TDGRVF Y+FPLLLNPYSETSGIVNYIA++EGGS+KLKGKKIVVLY Sbjct: 125 KVPLITINHGRTDSTDGRVFPYVFPLLLNPYSETSGIVNYIATREGGSEKLKGKKIVVLY 184 Query: 180 HGSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMN 239 HGSPYGKETIPIYKLL++KYGF L+QIEVPHPGN+QQ+QWL+IRRAK DYVVLRGWGVMN Sbjct: 185 HGSPYGKETIPIYKLLADKYGFELEQIEVPHPGNEQQSQWLSIRRAKADYVVLRGWGVMN 244 Query: 240 PVALKTAQKSGFPADHIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKT 299 PVALKTAQK GFP DHIIGNVWSNSEEDVIPAGDAAKGYVAITT A+GA+YPVLQE+ KT Sbjct: 245 PVALKTAQKVGFPVDHIIGNVWSNSEEDVIPAGDAAKGYVAITTQASGAEYPVLQEVIKT 304 Query: 300 VYGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQAKFGKRTLTGDEIRWGLENLNI 359 VYGAGKGNL D KRIGSVYHNLG++NGILNVEA+RIAQ KFGKRTLTGDE+RWG E+L + Sbjct: 305 VYGAGKGNLDDKKRIGSVYHNLGIVNGILNVEAVRIAQEKFGKRTLTGDEVRWGFEHLAL 364 Query: 360 DQARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWNVVSDWIAPDWKLLRPIIEK 419 D AR ALGAKGLFHSI+VTWDNHEG+G V FQQWDG +W VVSDWI+PDW LRPIIEK Sbjct: 365 DPARVEALGAKGLFHSINVTWDNHEGNGRVTFQQWDGAKWKVVSDWISPDWAALRPIIEK 424 Query: 420 SALAYAKEKNIKVRKSIDD 438 S+ AYA+E+ IK+R S DD Sbjct: 425 SSTAYAQERGIKIRTSGDD 443