BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2594.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774379.1| branched-chain amino acid ABC transporter pe... 469 e-130 ref|YP_004155773.1| inner-membrane translocator [Variovorax para... 456 e-126 ref|ZP_07674385.1| branched-chain amino acid ABC transporter, pe... 435 e-120 ref|NP_396458.1| ABC transporter, membrane spanning protein (bra... 390 e-106 ref|YP_002542295.1| amino acid ABC transporter [Agrobacterium ra... 389 e-106 >ref|YP_003774379.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62471.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 312/344 (90%), Positives = 321/344 (93%) Query: 1 MTTSLASSPRVLPLRGLSWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAV 60 MT SLA S R R A PWLLLL+ A+V++P AS Y+IDALLIPFLALSLAAV Sbjct: 1 MTISLAPSSRRFSAPRAWLRAAWPWLLLLLAAYVVVPWIASAYLIDALLIPFLALSLAAV 60 Query: 61 GLNLLTGYAGQLSLGSSAFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLP 120 GLNLLTGYAGQLSLGS+AFMAVGAFAAYNLNLRV GLPLLVSI LAGLAATAIGLVFGLP Sbjct: 61 GLNLLTGYAGQLSLGSAAFMAVGAFAAYNLNLRVAGLPLLVSIVLAGLAATAIGLVFGLP 120 Query: 121 SLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLF 180 SLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLF Sbjct: 121 SLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLF 180 Query: 181 ALAIVTVLTLLCWRLVQSQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAG 240 ALAIVTVLTLLCWRLVQSQTGHHFIAVRDNE AARVIGVPVLRTKLLAFA+SSFVIGVAG Sbjct: 181 ALAIVTVLTLLCWRLVQSQTGHHFIAVRDNEQAARVIGVPVLRTKLLAFAISSFVIGVAG 240 Query: 241 VLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLL 300 VLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAF GAALIVVFPLLLSRLGSLL Sbjct: 241 VLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFFGAALIVVFPLLLSRLGSLL 300 Query: 301 LGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALWERARRRL 344 LGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALW+R R+RL Sbjct: 301 LGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALWQRGRQRL 344 >ref|YP_004155773.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU37662.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 370 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 274/319 (85%), Positives = 296/319 (92%) Query: 26 LLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAF 85 L++LV+A+ I+P AS YV DALLIPFLALSLAAVGLNLLTGYAGQLSLG++AFMAVGAF Sbjct: 17 LVVLVIAFGIVPFTASGYVFDALLIPFLALSLAAVGLNLLTGYAGQLSLGTAAFMAVGAF 76 Query: 86 AAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLV 145 AAYN NLRV+GLPLLVSI LAGLAATA+GLVFGLPSLRLRGFYLAVSTLAAQFFVQW L Sbjct: 77 AAYNFNLRVDGLPLLVSIGLAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWALT 136 Query: 146 KFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFI 205 KFSWFSNDN SGVIDAP L V G+ FDTP GRY+F+L+IVTVLTLL WRLV++QTGHHFI Sbjct: 137 KFSWFSNDNASGVIDAPALEVAGIVFDTPVGRYIFSLSIVTVLTLLAWRLVRTQTGHHFI 196 Query: 206 AVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQIL 265 AVRDNELAARVIGVPVLRTKLLAFAVSSF++GVAGVLWGFVYLRTVEPAGFNLDRS QIL Sbjct: 197 AVRDNELAARVIGVPVLRTKLLAFAVSSFIVGVAGVLWGFVYLRTVEPAGFNLDRSFQIL 256 Query: 266 FIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFF 325 FIVIIGGLATIRGAF GAALIVVFPLLLSR+GS L G WFDSGVL+MSQRIVLGALIIFF Sbjct: 257 FIVIIGGLATIRGAFFGAALIVVFPLLLSRVGSFLFGGWFDSGVLDMSQRIVLGALIIFF 316 Query: 326 LIVEPQGLAALWERARRRL 344 L +EPQGL ALW+RAR+RL Sbjct: 317 LAMEPQGLVALWDRARKRL 335 >ref|ZP_07674385.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP67205.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 347 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 263/332 (79%), Positives = 291/332 (87%) Query: 19 WRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSA 78 W A + L+VA+ ++PL AS Y +DA+LIPFLALSLAAVGLNLLTGYAGQLS+GS+A Sbjct: 12 WPTWATPAVTLLVAYFVVPLVASDYWLDAILIPFLALSLAAVGLNLLTGYAGQLSVGSAA 71 Query: 79 FMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQF 138 FMAVGAFAAYN NLRVEGLPL VSI LAGLAATAIG+ FGLPSLRLRGFYLAVSTLAAQF Sbjct: 72 FMAVGAFAAYNFNLRVEGLPLPVSIVLAGLAATAIGVAFGLPSLRLRGFYLAVSTLAAQF 131 Query: 139 FVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQS 198 FVQW L K+ WFSN+N SGVIDAPP+VV G AFDTPA RY+FAL +VT+LT L WRLVQ+ Sbjct: 132 FVQWALTKYGWFSNNNASGVIDAPPIVVAGFAFDTPALRYVFALTVVTILTALVWRLVQT 191 Query: 199 QTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVEPAGFNL 258 TGHHFIAVRDNE+AARV GVPVLRTKLLAFA+SSFVIGVAGVLWGFVYLRTVEPAGFNL Sbjct: 192 PTGHHFIAVRDNEMAARVTGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNL 251 Query: 259 DRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVL 318 DRS QILFIVIIGGLATIRGAFLGAAL+VVFPLLLSR G+ + G FDSGVL++SQRIV+ Sbjct: 252 DRSFQILFIVIIGGLATIRGAFLGAALVVVFPLLLSRFGAFVFGGRFDSGVLDLSQRIVI 311 Query: 319 GALIIFFLIVEPQGLAALWERARRRLHKRAPA 350 GALI+ FLI EPQGLAALW+R RR+ A A Sbjct: 312 GALIVAFLIAEPQGLAALWQRVLRRISNVARA 343 >ref|NP_396458.1| ABC transporter, membrane spanning protein (branched chain amino acid) [Agrobacterium tumefaciens str. C58] gb|AAK90899.1| ABC transporter, membrane spanning protein (branched chain amino acid) [Agrobacterium tumefaciens str. C58] Length = 364 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 240/324 (74%), Positives = 280/324 (86%) Query: 18 SWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSS 77 S R A +++L +A++++P + Y+ +A+L+PFLALSLA VGLNLLTGYAGQ+SLGS+ Sbjct: 13 SLPRRAGTVVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSA 72 Query: 78 AFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQ 137 AFMAVGAFAAYN +LRV+GLPL VSI LAGL+A IG+VFGLPSLRLRGFYLAVSTLAAQ Sbjct: 73 AFMAVGAFAAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQ 132 Query: 138 FFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQ 197 FFVQW L KFSW SN++ SGVIDAP L + G++F+ P GRYLFAL VT LT L +RLV Sbjct: 133 FFVQWALTKFSWLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVS 192 Query: 198 SQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVEPAGFN 257 SQTG +FIAVRDNE AAR+IGVPVLRTKLLAFA+SSF+IGVAGV+W F YLRTVEPAGFN Sbjct: 193 SQTGRNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFN 252 Query: 258 LDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIV 317 LDRS QILFIVIIGGLA+IRGAF GAALIVVFPL+LSRLGSLLLG FDSGVL+M+QRIV Sbjct: 253 LDRSFQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVFDSGVLDMTQRIV 312 Query: 318 LGALIIFFLIVEPQGLAALWERAR 341 +GALII FLI+EP GL +LW+R + Sbjct: 313 IGALIILFLILEPDGLVSLWDRLK 336 >ref|YP_002542295.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM30698.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 349 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 243/327 (74%), Positives = 279/327 (85%), Gaps = 1/327 (0%) Query: 18 SWRRAAPWLLLLVVAWVILPLFASPYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSS 77 S+R AP ++ VA++++P S Y+ +A+L+PFLALSLA VGLNLLTGYAGQ+SLGS+ Sbjct: 16 SYRWLAP-AAVIAVAYLVVPFIGSTYLYEAILVPFLALSLAGVGLNLLTGYAGQVSLGSA 74 Query: 78 AFMAVGAFAAYNLNLRVEGLPLLVSIALAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQ 137 AFMAVGAFAAYN NLRV+GLPL+VSI LAGL A A+G+VFGLPSLRL+GFYLAVSTLAAQ Sbjct: 75 AFMAVGAFAAYNFNLRVDGLPLIVSILLAGLCAAAVGIVFGLPSLRLKGFYLAVSTLAAQ 134 Query: 138 FFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQ 197 FFVQW L KFSWFSND+ SGVIDAPPL + G+ F P GRYLF+L +V VLT L RL Sbjct: 135 FFVQWALTKFSWFSNDSASGVIDAPPLTLAGVEFTGPVGRYLFSLTVVVVLTFLAHRLAT 194 Query: 198 SQTGHHFIAVRDNELAARVIGVPVLRTKLLAFAVSSFVIGVAGVLWGFVYLRTVEPAGFN 257 SQTG +FIAVRDNE AAR+IGVPVL+TKLLAFA+SSF+I VAGVLW F YLRTVEPAGFN Sbjct: 195 SQTGRNFIAVRDNETAARIIGVPVLKTKLLAFAISSFIIAVAGVLWAFAYLRTVEPAGFN 254 Query: 258 LDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIV 317 LDRS QILFI+IIGGLA+ RGAF GAALIVVFPL+LSRLGS LLG FDSGVL+MSQRIV Sbjct: 255 LDRSFQILFIIIIGGLASTRGAFFGAALIVVFPLILSRLGSFLLGDLFDSGVLDMSQRIV 314 Query: 318 LGALIIFFLIVEPQGLAALWERARRRL 344 LGALII FLI+EP GL++LW + RRR Sbjct: 315 LGALIILFLILEPDGLSSLWGKIRRRF 341