BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2593.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774378.1| branched-chain amino acid ABC transporter pe... 398 e-109 ref|ZP_07674386.1| branched-chain amino acid ABC transporter, pe... 374 e-102 ref|YP_004155774.1| inner-membrane translocator [Variovorax para... 370 e-100 ref|YP_002542296.1| amino acid ABC transporter [Agrobacterium ra... 365 4e-99 ref|ZP_08529170.1| ABC transporter, membrane spanning protein (b... 358 7e-97 >ref|YP_003774378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62470.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 288/298 (96%), Positives = 294/298 (98%) Query: 1 MADFDWVFFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE 60 M+DFD VFFAEVLTGGLLSGVMY+LVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE Sbjct: 1 MSDFDGVFFAEVLTGGLLSGVMYALVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE 60 Query: 61 RGVPFALALLLTLAAMILLGLSIERVVLRPLQNQSPMTLFMATLGLSYVIEGAAQLLWGT 120 RG+PF LALLLTLAAMILLGL+IERVVLRPLQNQSPM+LFMATLGLSYVIEGAAQLLWGT Sbjct: 61 RGIPFVLALLLTLAAMILLGLAIERVVLRPLQNQSPMSLFMATLGLSYVIEGAAQLLWGT 120 Query: 121 QVHALELGIADTPLQLGGMMISSFDLFAAATAAVMVALLSAFFRYTRLGLEFRALADDGF 180 QVHALELGIADTPLQLGGMMISSFDLFAAATAA+MVALLS FFRYTRLGLEFRALADDGF Sbjct: 121 QVHALELGIADTPLQLGGMMISSFDLFAAATAALMVALLSLFFRYTRLGLEFRALADDGF 180 Query: 181 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV 240 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV Sbjct: 181 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV 240 Query: 241 LGAIVGGLLIGALEKLAEVYLGPLVGGGIEGWFAYVAALAFLLVRPSGLFGQRAWQRA 298 LGAIVGGLLIGALEKLAEVYLGPLVG GIEGWFAYVAALAFLLVRPSGLFGQRAWQRA Sbjct: 241 LGAIVGGLLIGALEKLAEVYLGPLVGSGIEGWFAYVAALAFLLVRPSGLFGQRAWQRA 298 >ref|ZP_07674386.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP67206.1| branched-chain amino acid ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 298 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 247/298 (82%), Positives = 268/298 (89%) Query: 1 MADFDWVFFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE 60 M DFD FFAEVL GGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSL+E Sbjct: 1 MGDFDLAFFAEVLVGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLLE 60 Query: 61 RGVPFALALLLTLAAMILLGLSIERVVLRPLQNQSPMTLFMATLGLSYVIEGAAQLLWGT 120 RGVPF LALL+T M+LLGL IERVVLRPL NQ P+TLFMATLGLSYVIEG AQL+WGT Sbjct: 61 RGVPFPLALLITFTLMVLLGLGIERVVLRPLVNQPPITLFMATLGLSYVIEGVAQLVWGT 120 Query: 121 QVHALELGIADTPLQLGGMMISSFDLFAAATAAVMVALLSAFFRYTRLGLEFRALADDGF 180 QVHAL LGI+D PLQ+GG+++SSFDLFAAA AAVMV LS FFRYTR+GL FRA+ADD + Sbjct: 121 QVHALNLGISDAPLQIGGILVSSFDLFAAAIAAVMVTALSVFFRYTRIGLAFRAVADDTY 180 Query: 181 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV 240 AA+AVGLRLPRI A VWA AG+IAL+AGLLWGARLGVQFSLSLVVLKALPVLVLGGFDS+ Sbjct: 181 AAIAVGLRLPRIWATVWAAAGVIALVAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSI 240 Query: 241 LGAIVGGLLIGALEKLAEVYLGPLVGGGIEGWFAYVAALAFLLVRPSGLFGQRAWQRA 298 LGA+VGGL+IGALEKLAEVYLGP VGGGIE W AYVAALAFLLV+P GLFG R +RA Sbjct: 241 LGAVVGGLIIGALEKLAEVYLGPFVGGGIESWIAYVAALAFLLVKPGGLFGLRPVERA 298 >ref|YP_004155774.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU37663.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 298 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 252/294 (85%), Positives = 270/294 (91%) Query: 5 DWVFFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVERGVP 64 D FFAEVL GGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVERGVP Sbjct: 5 DLSFFAEVLIGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVERGVP 64 Query: 65 FALALLLTLAAMILLGLSIERVVLRPLQNQSPMTLFMATLGLSYVIEGAAQLLWGTQVHA 124 FALALLLT A M+LLGL IER VLRPL NQ P+TLFMATLGLSYVIEG AQL+WGTQVHA Sbjct: 65 FALALLLTFALMVLLGLVIERTVLRPLVNQPPITLFMATLGLSYVIEGVAQLVWGTQVHA 124 Query: 125 LELGIADTPLQLGGMMISSFDLFAAATAAVMVALLSAFFRYTRLGLEFRALADDGFAALA 184 LELGIAD PLQ G+M+S+FDLFAAATA VMVA LSAFFRYTR+GL FRA+ADD +AA+A Sbjct: 125 LELGIADEPLQFLGIMVSTFDLFAAATAGVMVAALSAFFRYTRVGLAFRAVADDTYAAIA 184 Query: 185 VGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSVLGAI 244 VGLRLPRI A VWA AG+IAL+AGLLWGARLGVQFSLSLVVLKALPVLVLGGFDS+LGAI Sbjct: 185 VGLRLPRIWATVWAAAGVIALVAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSILGAI 244 Query: 245 VGGLLIGALEKLAEVYLGPLVGGGIEGWFAYVAALAFLLVRPSGLFGQRAWQRA 298 VGGL+IGALEKLAEVY+GP VGGGIE WFAYVAALAFLL+RPSGLFGQ+ +RA Sbjct: 245 VGGLVIGALEKLAEVYIGPFVGGGIESWFAYVAALAFLLIRPSGLFGQKLVERA 298 >ref|YP_002542296.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM30699.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 299 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 237/297 (79%), Positives = 264/297 (88%) Query: 1 MADFDWVFFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE 60 MADFDW FF EVL GGLLSGVMYSLVAIGFVLIYKTSGVLNFAQG+ LLFAALTFVSLVE Sbjct: 2 MADFDWSFFIEVLVGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGSMLLFAALTFVSLVE 61 Query: 61 RGVPFALALLLTLAAMILLGLSIERVVLRPLQNQSPMTLFMATLGLSYVIEGAAQLLWGT 120 RGVPFALA +T A M+L+G++IER VLRPL N+ P+TLFMATLGLSY+IEGAAQL+WGT Sbjct: 62 RGVPFALAFAITFAVMVLIGIAIERTVLRPLTNKPPITLFMATLGLSYIIEGAAQLIWGT 121 Query: 121 QVHALELGIADTPLQLGGMMISSFDLFAAATAAVMVALLSAFFRYTRLGLEFRALADDGF 180 QVH L+LGI D P ++GG++IS FD+FAAA AA MVALLS FFRYTR+GL FRA+ADD F Sbjct: 122 QVHGLDLGIEDVPFEVGGVLISQFDMFAAAVAAGMVALLSVFFRYTRIGLAFRAVADDQF 181 Query: 181 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV 240 AALAVGL+LP I A VWA AG++AL+AGLLWGARLGVQFSLSLVVLKALPVLVLGGFDS+ Sbjct: 182 AALAVGLKLPWIWATVWAAAGIVALVAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSI 241 Query: 241 LGAIVGGLLIGALEKLAEVYLGPLVGGGIEGWFAYVAALAFLLVRPSGLFGQRAWQR 297 LGAIVGGLLIGA EKLAEVY+G GGGIE WFAYV ALAFLL+RPSGLFGQ+ +R Sbjct: 242 LGAIVGGLLIGATEKLAEVYIGEYFGGGIESWFAYVVALAFLLIRPSGLFGQKLLER 298 >ref|ZP_08529170.1| ABC transporter, membrane spanning protein (branched chain amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL64121.1| ABC transporter, membrane spanning protein (branched chain amino acid) [Agrobacterium sp. ATCC 31749] Length = 299 Score = 358 bits (918), Expect = 7e-97, Method: Composition-based stats. Identities = 236/297 (79%), Positives = 265/297 (89%) Query: 1 MADFDWVFFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE 60 MA+FDW+FF EVL GGLLSGVMYSLVAIGFVLIYKTSGVLNF+QGA LLFAALTFVSLVE Sbjct: 2 MAEFDWLFFTEVLIGGLLSGVMYSLVAIGFVLIYKTSGVLNFSQGALLLFAALTFVSLVE 61 Query: 61 RGVPFALALLLTLAAMILLGLSIERVVLRPLQNQSPMTLFMATLGLSYVIEGAAQLLWGT 120 RGVPFALA +T A M+++G++IERVVLRPL N+ P+TLFMATLGLSY+IEGAAQLLWGT Sbjct: 62 RGVPFALAFAITFAIMVVIGIAIERVVLRPLTNKPPITLFMATLGLSYIIEGAAQLLWGT 121 Query: 121 QVHALELGIADTPLQLGGMMISSFDLFAAATAAVMVALLSAFFRYTRLGLEFRALADDGF 180 QVH L+LGI D P +GG+ IS FD+FAA AA MVA LSAFFRYTR+GL FRA+ADD F Sbjct: 122 QVHGLDLGIEDIPFDVGGVFISQFDIFAALVAAGMVAALSAFFRYTRIGLGFRAVADDQF 181 Query: 181 AALAVGLRLPRILAAVWATAGLIALIAGLLWGARLGVQFSLSLVVLKALPVLVLGGFDSV 240 AALAVGLRLP I A+VWA AGL+AL+AGLLWGAR+GVQFSLSLVVLKALPVLVLGGFDS+ Sbjct: 182 AALAVGLRLPWIWASVWAAAGLVALVAGLLWGARVGVQFSLSLVVLKALPVLVLGGFDSI 241 Query: 241 LGAIVGGLLIGALEKLAEVYLGPLVGGGIEGWFAYVAALAFLLVRPSGLFGQRAWQR 297 LGAI+GGLL+GA EKLAEVY+G GGGIEGWFAYV ALAFLL+RPSGLFGQ+ +R Sbjct: 242 LGAIIGGLLVGASEKLAEVYIGEYFGGGIEGWFAYVVALAFLLIRPSGLFGQKLVER 298