BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2589.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774374.1| sigma-54 dependent transcription regulator p... 661 0.0 ref|YP_004155788.1| sigma54 specific Fis family transcriptional ... 504 e-141 ref|ZP_06844501.1| sigma54 specific transcriptional regulator, F... 488 e-136 ref|YP_969253.1| sigma-54 dependent trancsriptional regulator [A... 487 e-135 ref|YP_004233321.1| Fis family sigma54 specific transcriptional ... 487 e-135 >ref|YP_003774374.1| sigma-54 dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62466.1| sigma-54 dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 348/380 (91%), Positives = 355/380 (93%) Query: 1 MHASPRSAHLYALPSSPEGDGDVAARTASPLLTLPHARKLGTSIRATAQVFHDPVSVALL 60 MHAS RSAHLYALPSSPEG GD+AAR + PLLTLPHARKLGTSIRATAQVFHDPVS+ALL Sbjct: 1 MHASHRSAHLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALL 60 Query: 61 ERVQRVAPSDANVVIIGATGTGKELIARHVHALSHRRDAPFVAVNCGAFSESLAESELFG 120 ERVQRVAPSDANVVIIGATGTGKELIARHVH LS RRDAPFVAVNCGAFSESLAESELFG Sbjct: 61 ERVQRVAPSDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFG 120 Query: 121 HEKGAFTGAIAHKAGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP 180 HEKGAFTGAI HK GWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP Sbjct: 121 HEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP 180 Query: 181 IDVRVIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPADILPLAYHFLHEYRQ 240 IDVR+IAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERP DILPLAYHFLHEYRQ Sbjct: 181 IDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQ 240 Query: 241 RLGYGAPRIDAEGERKLREHDWPGNIRELENAIHHALLICQEDSLRPEHFHLSHVERRPA 300 RLGYGA RID EGERKLR+HDWPGNIRELENAIHHALLICQ+D LR EHFHLSHVERR Sbjct: 241 RLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLD 300 Query: 301 YAAHGGMDCSNDPLQALEQALQNLFNQSQAGLFEKIEDTVFRTAFEFCERNQVQAARLLD 360 YA + NDPL ALEQALQ LFNQSQ GLFEKIEDTVFRTAFEFCERNQVQAARLLD Sbjct: 301 YAVAAADERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLD 360 Query: 361 ISRNVLRARLIRNGQISALK 380 ISRNVLRARLIRNGQISALK Sbjct: 361 ISRNVLRARLIRNGQISALK 380 >ref|YP_004155788.1| sigma54 specific Fis family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU37677.1| sigma54 specific transcriptional regulator, Fis family [Variovorax paradoxus EPS] Length = 378 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 268/374 (71%), Positives = 298/374 (79%), Gaps = 4/374 (1%) Query: 9 HLYALPSSPEGDGDVAARTASPLLTLPHARKLGTSIRATAQVFHDPVSVALLERVQRVAP 68 H LPS A LLT P+ RKL TSIRATAQVF DP S ALLER++ VAP Sbjct: 7 HFDVLPSVDASSAADEDWDAPTLLTFPNPRKLTTSIRATAQVFQDPRSAALLERIRMVAP 66 Query: 69 SDANVVIIGATGTGKELIARHVHALSHRRDAPFVAVNCGAFSESLAESELFGHEKGAFTG 128 SDANV+IIG TGTGKELIARHVH LS R PFVAVNCGAFSESL ESELFGHEKG+FTG Sbjct: 67 SDANVLIIGETGTGKELIARHVHDLSRRSGKPFVAVNCGAFSESLVESELFGHEKGSFTG 126 Query: 129 AIAHKAGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRVIAA 188 A + K GWFEAANGGTLFLDEIGDLPL+IQVKLLRVLQEREVVRLGSR+S+PIDVRV+AA Sbjct: 127 AFSAKTGWFEAANGGTLFLDEIGDLPLSIQVKLLRVLQEREVVRLGSRKSVPIDVRVVAA 186 Query: 189 TNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPADILPLAYHFLHEYRQRLGYGAPR 248 TNVRLQDAVAAGHFR+DL+YRL VV LA+P LRERP DILPLA HF+ EYRQRLGYGA R Sbjct: 187 TNVRLQDAVAAGHFREDLFYRLHVVHLALPTLRERPGDILPLARHFIEEYRQRLGYGAVR 246 Query: 249 IDAEGERKLREHDWPGNIRELENAIHHALLICQEDSLRPEHFHLS--HVERRPAYAAHGG 306 +DA E+KL EH WPGNIRELEN IHHALLICQ D L EH HLS +++RRPA + Sbjct: 247 LDAGAEQKLSEHGWPGNIRELENVIHHALLICQHDVLGAEHLHLSSLNIQRRPAESEAAA 306 Query: 307 MDCSNDPLQALEQALQNLFNQSQAGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVL 366 + P QALE L+ LFN+ +FE IEDTV RTAFEFC RNQVQAARLL ISRN+L Sbjct: 307 AHAT--PQQALETVLRELFNEPHDQMFELIEDTVMRTAFEFCHRNQVQAARLLGISRNIL 364 Query: 367 RARLIRNGQISALK 380 R+RLI++ +I+ALK Sbjct: 365 RSRLIKSREITALK 378 >ref|ZP_06844501.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. Ch1-1] gb|EFG67827.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. Ch1-1] Length = 385 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 253/357 (70%), Positives = 285/357 (79%), Gaps = 9/357 (2%) Query: 28 ASPLLTLPHARKLGTSIRATAQVFHDPVSVALLERVQRVAPSDANVVIIGATGTGKELIA 87 A PLLT+P R L TSIRATAQVF DP S+ALLER++ VAPSDANV++IG TGTGKEL+A Sbjct: 34 APPLLTMPDKRALTTSIRATAQVFSDPQSLALLERIRMVAPSDANVLVIGETGTGKELVA 93 Query: 88 RHVHALSHRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAIAHKAGWFEAANGGTLFL 147 RHVH LS R+D PFVAVNCGAFSESL ESELFGHEKGAFTGA K GWFEAANGGTLFL Sbjct: 94 RHVHNLSARKDGPFVAVNCGAFSESLVESELFGHEKGAFTGAFCAKPGWFEAANGGTLFL 153 Query: 148 DEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRVIAATNVRLQDAVAAGHFRQDLY 207 DEIGDLPL++QVKLLRVLQERE+VRLGSRRSIPIDVRV+AATNV LQDAVAAGHFR+DL+ Sbjct: 154 DEIGDLPLSMQVKLLRVLQEREIVRLGSRRSIPIDVRVLAATNVHLQDAVAAGHFREDLF 213 Query: 208 YRLQVVQLAIPRLRERPADILPLAYHFLHEYRQRLGYGAPRIDAEGERKLREHDWPGNIR 267 YRL VV LA+P LR+RP DILPLA +F+ EYR RLGYG I+ ERKL H WPGNIR Sbjct: 214 YRLNVVHLAVPTLRDRPGDILPLARYFIEEYRNRLGYGPVGIEPRAERKLLAHSWPGNIR 273 Query: 268 ELENAIHHALLICQEDSLRPEHFHLS----HVERRPAYAAHGGMDCSNDPLQALEQALQN 323 ELEN IH+ALL+C+ DSL +S H RR A S PL+ LE+AL++ Sbjct: 274 ELENVIHYALLVCRSDSLGEGDLQISSFGTHAPRRTASEP-----VSTTPLEGLEEALRH 328 Query: 324 LFNQSQAGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 LF ++ LFE+IEDTV R AF+FC RNQ+QAARLL ISRNVLRARLIR QISA K Sbjct: 329 LFGNAEGNLFEQIEDTVMRVAFDFCYRNQIQAARLLGISRNVLRARLIRAKQISAQK 385 >ref|YP_969253.1| sigma-54 dependent trancsriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM31479.1| sigma54 specific transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 373 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 264/376 (70%), Positives = 296/376 (78%), Gaps = 4/376 (1%) Query: 5 PRSAHLYALPSSPEGDGDVAARTASPLLTLPHARKLGTSIRATAQVFHDPVSVALLERVQ 64 P L A P +GD R A+PLLTLP AR + TSIRATAQVF DP S+ALLER++ Sbjct: 2 PPVHFLKAFPE--DGDAPARHRYAAPLLTLPGARAMPTSIRATAQVFEDPRSLALLERIR 59 Query: 65 RVAPSDANVVIIGATGTGKELIARHVHALSHRRDAPFVAVNCGAFSESLAESELFGHEKG 124 VAPSDANV+I+G TGTGKELIARHVHALS RR PFVAVNCGA SE+L ESELFGHEKG Sbjct: 60 LVAPSDANVLILGETGTGKELIARHVHALSARRSGPFVAVNCGALSETLVESELFGHEKG 119 Query: 125 AFTGAIAHKAGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVR 184 AFTGA KAGWFEAA+GGTLFLDE+GDLPL+IQVKLLRVLQEREVVRLG+RRS+P+DVR Sbjct: 120 AFTGAFTAKAGWFEAAHGGTLFLDEVGDLPLSIQVKLLRVLQEREVVRLGARRSLPVDVR 179 Query: 185 VIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPADILPLAYHFLHEYRQRLGY 244 V+AATNVRLQDAVAAG+FRQDL+YRL VV LA+P LRERP DILPLA HF+ EYR RLGY Sbjct: 180 VVAATNVRLQDAVAAGNFRQDLFYRLHVVNLALPTLRERPGDILPLARHFIDEYRHRLGY 239 Query: 245 GAPRIDAEGERKLREHDWPGNIRELENAIHHALLICQEDSLRPEHFHLSHVERRPAYAAH 304 G R+DA ERKL HDWPGNIRELEN IHH LL+C+ L E LS + R + Sbjct: 240 GPVRLDAGAERKLLAHDWPGNIRELENVIHHGLLVCRRGVLLAEDLQLSSLGLRRRSGSD 299 Query: 305 GGMDCSNDPLQALEQALQNLFNQSQAGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRN 364 D + PLQALE AL LF Q L+E+IE+TV R AFEFC RNQVQAARLL ISRN Sbjct: 300 APADAT--PLQALETALSGLFQQQGDQLYERIEETVVRAAFEFCHRNQVQAARLLGISRN 357 Query: 365 VLRARLIRNGQISALK 380 VLRARLIR+G I+AL+ Sbjct: 358 VLRARLIRHGDITALR 373 >ref|YP_004233321.1| Fis family sigma54 specific transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44754.1| sigma54 specific transcriptional regulator, Fis family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 264/371 (71%), Positives = 298/371 (80%), Gaps = 8/371 (2%) Query: 12 ALPSSPEGDGDVAARTASPLLTLPHARKLGTSIRATAQVFHDPVSVALLERVQRVAPSDA 71 ALP +GD R A+PLLTLP AR + TSIRATAQVF DP S+ALLER++ VAPS+A Sbjct: 9 ALPE--DGDAPARHREAAPLLTLPGARAMPTSIRATAQVFEDPRSLALLERIRLVAPSEA 66 Query: 72 NVVIIGATGTGKELIARHVHALSHRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAIA 131 NV+I+G TGTGKELIARHVHALS RR+ PFVAVNCGA SE+L ESELFGHEKGAFTGA Sbjct: 67 NVLILGETGTGKELIARHVHALSARREGPFVAVNCGALSETLVESELFGHEKGAFTGAFT 126 Query: 132 HKAGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRVIAATNV 191 KAGWFEAANGGTLFLDE+GDLPL+IQVKLLRVLQEREVVRLG+RRS+P+DVRV+AATNV Sbjct: 127 AKAGWFEAANGGTLFLDEVGDLPLSIQVKLLRVLQEREVVRLGARRSLPVDVRVVAATNV 186 Query: 192 RLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPADILPLAYHFLHEYRQRLGYGAPRIDA 251 RLQDAVAAG+FR+DL+YRL VV LA+P LRERP DILPLA HF+ EYR RLGYG R+D Sbjct: 187 RLQDAVAAGNFREDLFYRLHVVGLALPTLRERPGDILPLARHFIDEYRHRLGYGPVRLDG 246 Query: 252 EGERKLREHDWPGNIRELENAIHHALLICQEDSLRPEHFHLSH--VERRPAYAAHGGMDC 309 ERKL HDWPGNIRELEN IHH LLIC+ L E LS ++RRPA G Sbjct: 247 GAERKLLAHDWPGNIRELENVIHHGLLICRRGVLLAEDLQLSSLGLQRRPA----GEAQA 302 Query: 310 SNDPLQALEQALQNLFNQSQAGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRAR 369 PLQALE AL +LF Q L+E+IE+TV R AFEFC RNQVQAARLL ISRNVLRAR Sbjct: 303 EATPLQALETALSDLFQQQGEQLYERIEETVVRAAFEFCHRNQVQAARLLGISRNVLRAR 362 Query: 370 LIRNGQISALK 380 LIR+G I+A++ Sbjct: 363 LIRHGDITAVR 373